Bacteriophage PhiX174's ecological niche and the flexibility of its escherichia coli lipopolysaccharide receptor

Applied and Environmental Microbiology

Volumn 76, Issue 21, 2010, Pages 7310-7313

  Michel, Alix ^a   Clermont, Olivier ^a   Denamur, Erick ^a   Tenaillon, Olivier ^a  

^a INSERM   (France)

Author keywords

[No Author keywords available]

Indexed keywords

E. COLI; ECOLOGICAL NICHE; LIPOPOLYSACCHARIDES;

BACTERIOPHAGES; ECOLOGY;

ESCHERICHIA COLI;

LIPOPOLYSACCHARIDE;

BACTERIOPHAGE; COLIFORM BACTERIUM; PHENOTYPE; PHYLOGENY; POLYSACCHARIDE;

ARTICLE; BACTERIOPHAGE PHI X 174; ECOLOGY; ESCHERICHIA COLI; ESCHERICHIA COLI K 12; GENETICS; METABOLISM; MUTATION; PATHOGENICITY; PHENOTYPE; PHYLOGENY; PHYSIOLOGY; VIROLOGY;

BACTERIOPHAGE PHI X 174; ECOLOGY; ESCHERICHIA COLI; ESCHERICHIA COLI K12; LIPOPOLYSACCHARIDES; MUTATION; PHENOTYPE; PHYLOGENY;

ENTEROBACTERIA PHAGE PHIX174; ESCHERICHIA COLI; ESCHERICHIA COLI K12;

EID: 78149460978     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02721-09     Document Type: Article

References (30)

1. Amor, K., D. E. Heinrichs, E. Frirdich, K. Ziebell, R. P. Johnson, and C. Whitfield. 2000. Distribution of core oligosaccharide types in lipopolysaccharides from Escherichia coli. Infect. Immun. 68:1116-1124.
2. Baba, T., T. Ara, M. Hasegawa, Y. Takai, Y. Okumura, M. Baba, K. A. Datsenko, M. Tomita, B. L. Wanner, and H. Mori. 2006. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection. Mol. Syst. Biol. doi:10.1038/msb4100050. (Pubitemid 43948152)
3. Bauer, M. E., and R. A. Welch. 1997. Pleiotropic effects of a mutation in rfaC on Escherichia coli hemolysin. Infect. Immun. 65:2218-2224.
4. Blattner, F. R., G. Plunkett III, C. A. Bloch, N. T. Perna, V. Burland, M. Riley, J. Collado-Vides, J. D. Glasner, C. K. Rode, G. F. Mayhew, J. Gregor, N. W. Davis, H. A. Kirkpatrick, M. A. Goeden, D. J. Rose, B. Mau, and Y. Shao. 1997. The complete genome sequence of Escherichia coli K-12. Science 277:1453-1462. (Pubitemid 27449228)
5. Bosch, A. 1998. Human enteric viruses in the water environment: A minireview. Int. Microbiol. 1:191-196.
6. Clermont, O., S. Bonacorsi, and E. Bingen. 2000. Rapid and simple determination of the Escherichia coli phylogenetic group. Appl. Environ. Microbiol. 66:4555-4558.
7. Clermont, O., M. Lescat, C. O'Brien, D. Gordon, O. Tenaillon, and E. Denamur. 2008. Evidence for a human-specific Escherichia coli clone. Environ. Microbiol. 10:1000-1006.
8. Crill, W. D., H. A. Wichman, and J. J. Bull. 2000. Evolutionary reversals during viral adaptation to alternating hosts. Genetics 154:27-37.
9. Duriez, P., O. Clermont, S. Bonacorsi, E. Bingen, A. Chaventré, J. Elion, B. Picard, and E. Denamur. 2001. Commensal Escherichia coli isolates are phylogenetically distributed among geographically distinct human populations. Microbiology 147:1671-1676. (Pubitemid 32544832)
10. Escobar-Páramo, P., K. Grenet, A. Le Menac'h, L. Rode, E. Salgado, C. Amorin, S. Gouriou, B. Picard, M. C. Rahimy, A. Andremont, E. Denamur, and R. Ruimy. 2004. Large-scale population structure of human commensal Escherichia coli isolates. Appl. Environ. Microbiol. 70:5698.
11. Escobar-Páramo, P., A. Le Menac'h, T. Le Gall, C. Amorin, S. Gouriou, B. Picard, D. Skurnik, and E. Denamur. 2006. Identification of forces shaping the commensal Escherichia coli genetic structure by comparing animal and human isolates. Environ. Microbiol. 8:1975-1984.
12. Fane, B. A., K. L. Brentlinger, A. D. Burch, M. Chen, S. Hafenstein, E. Moore, C. R. Novak, and A. Uchiyama. 2006. φX174 et al., the Microviridae, p. 129-145. In R. Calendar and S. Abedon (ed.), The bacteriophages. Oxford University Press, Oxford, United Kingdom.
13. Feige, U., and S. Stirm. 1976. On the structure of the Escherichia coli C cell wall lipopolysaccharide core and its PhiX174 receptor region. Biochem. Biophys. Res. Commun. 71:566-573.
14. Inoue, T., R. Shingaki, S. Hirose, K. Waki, H. Mori, and K. Fukui. 2007. Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. J. Bacteriol. 189:950-957.
15. Jansson, P.-E., R. Wollin, G. W. Bruse, and A. A. Lindberg. 1989. The conformation of core oligosaccharides from Escherichia coli and Salmonella typhimurium lipopolysaccharides as predicted by semi-empirical calculations. J. Mol. Recognit. 2:25-36.
16. Kitagawa, M., T. Ara, M. Arifuzzaman, T. Ioka-Nakamichi, E. Inamoto, H. Toyonaga, and H. Mori. 2005. Complete set of ORF clones of Escherichia coli ASKA library: Unique resources for biological research. DNA Res. 12:291-299.
17. Kneidinger, B., C. Marolda, M. Graninger, A. Zamyatina, F. McArthur, P. Kosma, M. A. Valvano, and P. Messner. 2002. Biosynthesis pathway of ADP-L-glycero-β-D-manno-heptose in Escherichia coli. J. Bacteriol. 184:363-369.
18. Moreau, F., N. Desroy, J. M. Genevard, V. Vongsouthi, V. V. Gerusz, G. Le Fralliec, C. Oliviera, S. Floquet, A. Denis, S. Escaich, K. Wolf, M. Busemann, and A. Aschenbrenner. 2008. Discovery of a new gram-negative antivirulence drugs: Structure and properties of novel E. coli WaaC inhibitors. Bioorg. Med. Chem. Lett. 18:4022-4026.
19. Muniesa, M., L. Mocé-Llivina, H. Katayama, and J. Jofre. 2003. Bacterial host strains that support replication of somatic coliphages. Antonie Van Leeuwenhoek 83:305-315.
20. Ochman, H., and R. Selander. 1984. Standard reference strains of Escherichia coli from natural populations. J. Bacteriol. 157:690-693.
21. Pepin, K. M., J. Domsic, and R. McKenna. 2008. Genomic evolution in a virus under specific selection for host recognition. Infect. Genet. Evol. 8:825-834.
22. Pepin, K. M., M. A. Samuel, and H. A. Wichman. 2006. Variable pleiotropic effects from mutations at the same locus hamper prediction of fitness from a fitness component. Genetics 172:2047-2056.
23. Schnaitman, C. A., and J. D. Klenat. 1993. Genetics of lipopolysaccharide biosynthesis in enteric bacteria. Microbiol. Rev. 57:655-682.
24. Sherburne, C., and D. E. Taylor. 1997. Effect of lipopolysaccharide mutations on recipient ability of Salmonella typhimurium for incompatibility group H plasmids. J. Bacteriol. 179:952-955.
25. Silander, O. K., O. Tenaillon, and L. Chao. 2007. Understanding the evolutionary fate of finite populations: The dynamics of mutational effects. PLoS Biol. 5:e94.
26. Sirisena, D. M., K. A. Brozek, P. R. MacLachlan, K. E. Sanderson, and C. R. H. Raetz. 1992. The rfaC gene in Salmonella typhimurium. J. Biol. Chem. 267:18874-18884.
27. Skurray, R. A., R. E. W. Hancock, and P. Reeves. 1974. Con-mutants: Class of mutants in Escherichia coli K-12 lacking a major cell wall proteine and defective in conjugation and adsorption of a bacteriophage. J. Bacteriol. 119:726-735.
28. Suzuki, M., Y. Kaneko-Tanaka, and M. Azegami. 1974. Transfection of non-host bacterial spheroplasts with bacteriophage PhiX174 DNA. Nature 252:319-321.
29. Szalo, I. M., B. Taminiau, and J. Mainil. 2006. Le lipopolysaccharide d'Escherichia coli: Structure, biosynthèse et rôles. Ann. Med. Vet. 150:108-124.
30. Tenaillon, O., D. Skurnik, B. Picard, and E. Denamur. 2010. The population genetics of commensal Escherichia coli. Nat. Rev. Microbiol. 8:207-217.