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Volumn 42, Issue 14, 2014, Pages 9146-9157

Sensitive, multiplex and direct quantification of RNA sequences using a modified RASL assay

Author keywords

[No Author keywords available]

Indexed keywords

RNA LIGASE; RNL2 PROTEIN; UNCLASSIFIED DRUG;

EID: 84906235451     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gku636     Document Type: Article
Times cited : (20)

References (24)
  • 1
    • 33747177904 scopus 로고    scopus 로고
    • Direct comparison of nick-joining activity of the nucleic acid ligases from bacteriophage T4
    • Bullard, D.R. and Bowater, R.P. (2006) Direct comparison of nick-joining activity of the nucleic acid ligases from bacteriophage T4. Biochem. J. 398, 135-144.
    • (2006) Biochem. J. , vol.398 , pp. 135-144
    • Bullard, D.R.1    Bowater, R.P.2
  • 3
    • 33646240135 scopus 로고    scopus 로고
    • Two-dimensional transcriptome profiling: Identification of messenger RNA isoform signatures in prostate cancer from archived paraffin-embedded cancer specimens
    • Li, H.R., Wang-Rodriguez, J., Nair, T.M., Yeakley, J.M., Kwon, Y.S., Bibikova, M., Zheng, C., Zhou, L., Zhang, K., Downs, T. et al. (2006) Two-dimensional transcriptome profiling: identification of messenger RNA isoform signatures in prostate cancer from archived paraffin-embedded cancer specimens. Cancer Res. 66, 4079-4088.
    • (2006) Cancer Res. , vol.66 , pp. 4079-4088
    • Li, H.R.1    Wang-Rodriguez, J.2    Nair, T.M.3    Yeakley, J.M.4    Kwon, Y.S.5    Bibikova, M.6    Zheng, C.7    Zhou, L.8    Zhang, K.9    Downs, T.10
  • 5
    • 84864087907 scopus 로고    scopus 로고
    • RASL-seq for massively parallel and quantitative analysis of gene expression
    • Chapter 4:Unit 4 13
    • Li, H., Qiu, J. and Fu, X.D. (2012) RASL-seq for massively parallel and quantitative analysis of gene expression. Curr. Protoc. Mol. Biol. Chapter 4:Unit 4 13, 11-19.
    • (2012) Curr. Protoc. Mol. Biol. , pp. 11-19
    • Li, H.1    Qiu, J.2    Fu, X.D.3
  • 6
    • 9944230069 scopus 로고    scopus 로고
    • The polynucleotide ligase and RNA capping enzyme superfamily of covalent nucleotidyltransferases
    • Shuman, S. and Lima, C.D. (2004) The polynucleotide ligase and RNA capping enzyme superfamily of covalent nucleotidyltransferases. Curr. Opin. Struct. Biol. 14, 757-764.
    • (2004) Curr. Opin. Struct. Biol. , vol.14 , pp. 757-764
    • Shuman, S.1    Lima, C.D.2
  • 7
    • 39149142191 scopus 로고    scopus 로고
    • DNA and RNA ligases: Structural variations and shared mechanisms
    • Pascal, J.M. (2008) DNA and RNA ligases: structural variations and shared mechanisms. Curr. Opin. Struct. Biol. 18, 96-105.
    • (2008) Curr. Opin. Struct. Biol. , vol.18 , pp. 96-105
    • Pascal, J.M.1
  • 8
    • 0038043264 scopus 로고    scopus 로고
    • Structure-function analysis of T4 RNA ligase 2
    • Yin, S., Ho, C.K. and Shuman, S. (2003) Structure-function analysis of T4 RNA ligase 2. J. Biol. Chem. 278, 17601-17608.
    • (2003) J. Biol. Chem. , vol.278 , pp. 17601-17608
    • Yin, S.1    Ho, C.K.2    Shuman, S.3
  • 9
    • 6344289396 scopus 로고    scopus 로고
    • How an RNA ligase discriminates RNA versus DNA damage
    • Nandakumar, J. and Shuman, S. (2004) How an RNA ligase discriminates RNA versus DNA damage. Mol. Cell 16, 211-221.
    • (2004) Mol. Cell , vol.16 , pp. 211-221
    • Nandakumar, J.1    Shuman, S.2
  • 10
    • 34447321852 scopus 로고    scopus 로고
    • Enhancements and modifications of primer design program Primer3
    • Koressaar, T. and Remm, M. (2007) Enhancements and modifications of primer design program Primer3. Bioinformatics 23, 1289-1291.
    • (2007) Bioinformatics , vol.23 , pp. 1289-1291
    • Koressaar, T.1    Remm, M.2
  • 12
    • 0036140076 scopus 로고    scopus 로고
    • MELTING, computing the melting temperature of nucleic acid duplex
    • Le Novere, N. (2001) MELTING, computing the melting temperature of nucleic acid duplex. Bioinformatics 17, 1226-1227.
    • (2001) Bioinformatics , vol.17 , pp. 1226-1227
    • Le Novere, N.1
  • 14
    • 84897397058 scopus 로고    scopus 로고
    • FeatureCounts: An efficient general purpose program for assigning sequence reads to genomic features
    • Liao, Y., Smyth, G.K. and Shi, W. (2014) featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics 30, 923-930.
    • (2014) Bioinformatics , vol.30 , pp. 923-930
    • Liao, Y.1    Smyth, G.K.2    Shi, W.3
  • 15
    • 3843051369 scopus 로고    scopus 로고
    • RNA substrate specificity and structure-guided mutational analysis of bacteriophage T4 RNA ligase 2
    • Nandakumar, J., Ho, C.K., Lima, C.D. and Shuman, S. (2004) RNA substrate specificity and structure-guided mutational analysis of bacteriophage T4 RNA ligase 2. J. Biol. Chem. 279, 31337-31347.
    • (2004) J. Biol. Chem. , vol.279 , pp. 31337-31347
    • Nandakumar, J.1    Ho, C.K.2    Lima, C.D.3    Shuman, S.4
  • 16
    • 83755171561 scopus 로고    scopus 로고
    • Kinetic characterization of single strand break ligation in duplex DNA by T4 DNA ligase
    • Lohman, G.J., Chen, L. and Evans, T.C. Jr. (2011) Kinetic characterization of single strand break ligation in duplex DNA by T4 DNA ligase. J. Biol. Chem. 286, 44187-44196.
    • (2011) J. Biol. Chem. , vol.286 , pp. 44187-44196
    • Lohman, G.J.1    Chen, L.2    Evans Jr., T.C.3
  • 17
    • 33845204805 scopus 로고    scopus 로고
    • Evolving thermostable reverse transcriptase activity in a DNA polymerase scaffold
    • Sauter, K.B. and Marx, A. (2006) Evolving thermostable reverse transcriptase activity in a DNA polymerase scaffold. Angew. Chem. Int. Ed. Engl. 45, 7633-7635.
    • (2006) Angew. Chem. Int. Ed. Engl. , vol.45 , pp. 7633-7635
    • Sauter, K.B.1    Marx, A.2
  • 18
    • 3142765336 scopus 로고    scopus 로고
    • Class-switch recombination: Interplay of transcription, DNA deamination and DNA repair
    • Chaudhuri, J. and Alt, F.W. (2004) Class-switch recombination: interplay of transcription, DNA deamination and DNA repair. Nat. Rev. Immunol. 4, 541-552.
    • (2004) Nat. Rev. Immunol. , vol.4 , pp. 541-552
    • Chaudhuri, J.1    Alt, F.W.2
  • 19
    • 84897115704 scopus 로고    scopus 로고
    • The production and regulation of IgE by the immune system
    • Wu, L.C. and Zarrin, A.A. (2014) The production and regulation of IgE by the immune system. Nat. Rev. Immunol. 14, 247-259.
    • (2014) Nat. Rev. Immunol. , vol.14 , pp. 247-259
    • Wu, L.C.1    Zarrin, A.A.2
  • 20
    • 0032699213 scopus 로고    scopus 로고
    • IgE in asthma and atopy: Cellular and molecular connections
    • Oettgen, H.C. and Geha, R.S. (1999) IgE in asthma and atopy: cellular and molecular connections. J. Clin. Invest. 104, 829-835.
    • (1999) J. Clin. Invest. , vol.104 , pp. 829-835
    • Oettgen, H.C.1    Geha, R.S.2
  • 21
    • 1542328972 scopus 로고    scopus 로고
    • Properties of the reverse transcription reaction in mRNA quantification
    • Stahlberg, A., Hakansson, J., Xian, X., Semb, H. and Kubista, M. (2004) Properties of the reverse transcription reaction in mRNA quantification. Clin. Chem. 50, 509-515.
    • (2004) Clin. Chem. , vol.50 , pp. 509-515
    • Stahlberg, A.1    Hakansson, J.2    Xian, X.3    Semb, H.4    Kubista, M.5
  • 22
    • 0028828597 scopus 로고
    • Secondary structure in the 3′ UTR of EGF and the choice of reverse transcriptases affect the detection of message diversity by RT-PCR
    • 814-805
    • Brooks, E.M., Sheflin, L.G. and Spaulding, S.W. (1995) Secondary structure in the 3′ UTR of EGF and the choice of reverse transcriptases affect the detection of message diversity by RT-PCR. BioTechniques 19, 806-812, 814-805.
    • (1995) BioTechniques , vol.19 , pp. 806-812
    • Brooks, E.M.1    Sheflin, L.G.2    Spaulding, S.W.3
  • 23
    • 0036667911 scopus 로고    scopus 로고
    • Sensitivity and accuracy of quantitative real-time polymerase chain reaction using SYBR green I depends on cDNA synthesis conditions
    • Lekanne Deprez, R.H., Fijnvandraat, A.C., Ruijter, J.M. and Moorman, A.F. (2002) Sensitivity and accuracy of quantitative real-time polymerase chain reaction using SYBR green I depends on cDNA synthesis conditions. Anal. Biochem. 307, 63-69.
    • (2002) Anal. Biochem. , vol.307 , pp. 63-69
    • Lekanne Deprez, R.H.1    Fijnvandraat, A.C.2    Ruijter, J.M.3    Moorman, A.F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.