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Volumn 28, Issue 16, 2014, Pages 1827-1839

Active enhancers are delineated de novo during hematopoiesis, with limited lineage fidelity among specified primary blood cells

Author keywords

Chromatin dynamics; Hematopoiesis; Nucleosome dynamics; Tissue differentiation; Tissue selective enhancers

Indexed keywords

ERYTHROPOIETIN; HISTONE H3; HISTONE H3K4ME1; HISTONE H3K4ME2; STEM CELL FACTOR; THROMBOPOIETIN; TRANSCRIPTION FACTOR GATA 1; UNCLASSIFIED DRUG;

EID: 84906098540     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.240101.114     Document Type: Article
Times cited : (34)

References (63)
  • 1
    • 34848883146 scopus 로고    scopus 로고
    • Reciprocal activation of GATA-1 and PU.1 marks initial specification of hematopoietic stem cells into myeloerythroid and myelolymphoid lineages
    • Arinobu Y., Mizuno S, Chong Y, Shigematsu H, Iino T, Iwasaki H, Graf T., Mayfield R, Chan S, Kastner P, et al. 2007. Reciprocal activation of GATA-1 and PU.1 marks initial specification of hematopoietic stem cells into myeloerythroid and myelolymphoid lineages. Cell Stem Cell 1: 416-427.
    • (2007) Cell Stem Cell , vol.1 , pp. 416-427
    • Arinobu, Y.1    Mizuno, S.2    Chong, Y.3    Shigematsu, H.4    Iino, T.5    Iwasaki, H.6    Graf, T.7    Mayfield, R.8    Chan, S.9    Kastner, P.10
  • 5
    • 80054728495 scopus 로고    scopus 로고
    • Animal transcription networks as highly connected, quantitative continua
    • Biggin M.D. 2011. Animal transcription networks as highly connected, quantitative continua. Dev Cell 21: 611-626.
    • (2011) Dev Cell , vol.21 , pp. 611-626
    • Biggin, M.D.1
  • 9
    • 58049191558 scopus 로고    scopus 로고
    • Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation
    • Cui K., Zang C, Roh TY, Schones DE, Childs RW, PengW, Zhao K. 2009. Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation. Cell Stem Cell 4: 80-93.
    • (2009) Cell Stem Cell , vol.4 , pp. 80-93
    • Cui, K.1    Zang, C.2    Roh, T.Y.3    Schones, D.E.4    Childs, R.W.5    Peng, W.6    Zhao, K.7
  • 11
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • The ENCODE Project Consortium
    • The ENCODE Project Consortium. 2012. An integrated encyclopedia of DNA elements in the human genome. Nature 489: 57-74.
    • (2012) Nature , vol.489 , pp. 57-74
  • 12
    • 85015069067 scopus 로고    scopus 로고
    • Controlling the double helix
    • Felsenfeld G., Groudine M. 2003. Controlling the double helix. Nature 421: 448-453.
    • (2003) Nature , vol.421 , pp. 448-453
    • Felsenfeld, G.1    Groudine, M.2
  • 14
    • 33847047461 scopus 로고    scopus 로고
    • Epigenetics: A landscape takes shape
    • Goldberg A. D, Allis CD, Bernstein E. 2007. Epigenetics: a landscape takes shape. Cell 128: 635-638.
    • (2007) Cell , vol.128 , pp. 635-638
    • Goldberg, A.D.1    Allis, C.D.2    Bernstein, E.3
  • 18
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz S., Benner C, Spann N, Bertolino E, Lin YC, Laslo P, Cheng J. X, Murre C, Singh H, Glass CK. 2010. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 38: 576-589.
    • (2010) Mol Cell , vol.38 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3    Bertolino, E.4    Lin, Y.C.5    Laslo, P.6    Cheng, J.X.7    Murre, C.8    Singh, H.9    Glass, C.K.10
  • 19
    • 0037099497 scopus 로고    scopus 로고
    • Transcription factor-mediated lineage switching reveals plasticity in primary committed progenitor cells
    • Heyworth C., Pearson S, May G, Enver T. 2002. Transcription factor-mediated lineage switching reveals plasticity in primary committed progenitor cells. EMBO J 21: 3770-3781.
    • (2002) EMBO J , vol.21 , pp. 3770-3781
    • Heyworth, C.1    Pearson, S.2    May, G.3    Enver, T.4
  • 20
    • 0027363528 scopus 로고
    • Hematopoietic lineage-and stage-restricted expression of the ETS oncogene family member PU.1
    • Hromas R., Orazi A, Neiman RS, Maki R, Van Beveran C, Moore J, Klemsz M. 1993. Hematopoietic lineage-and stage-restricted expression of the ETS oncogene family member PU.1. Blood 82: 2998-3004.
    • (1993) Blood , vol.82 , pp. 2998-3004
    • Hromas, R.1    Orazi, A.2    Neiman, R.S.3    Maki, R.4    Van Beveran, C.5    Moore, J.6    Klemsz, M.7
  • 23
    • 68149150830 scopus 로고    scopus 로고
    • H3.3/H2A. Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions
    • Jin C., Zang C, Wei G, Cui K, Peng W, Zhao K, Felsenfeld G. 2009. H3.3/H2A. Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions. Nat Genet 41: 941-945.
    • (2009) Nat Genet , vol.41 , pp. 941-945
    • Jin, C.1    Zang, C.2    Wei, G.3    Cui, K.4    Peng, W.5    Zhao, K.6    Felsenfeld, G.7
  • 27
    • 0029066359 scopus 로고
    • GATA-1 reprograms avian myelomonocytic cell lines into eosinophils, thromboblasts, and erythroblasts
    • Kulessa H., Frampton J, Graf T. 1995. GATA-1 reprograms avian myelomonocytic cell lines into eosinophils, thromboblasts, and erythroblasts. Genes Dev 9: 1250-1262.
    • (1995) Genes Dev , vol.9 , pp. 1250-1262
    • Kulessa, H.1    Frampton, J.2    Graf, T.3
  • 29
    • 0034663319 scopus 로고    scopus 로고
    • Hematopoietic-specific ß1 tubulin participates in a pathway of platelet biogenesis dependent on the transcription factor NF-E2
    • Lecine P., Italiano JE Jr, Kim SW, Villeval JL, Shivdasani RA. 2000. Hematopoietic-specific ß1 tubulin participates in a pathway of platelet biogenesis dependent on the transcription factor NF-E2. Blood 96: 1366-1373.
    • (2000) Blood , vol.96 , pp. 1366-1373
    • Lecine, P.1    Italiano Jr., J.E.2    Kim, S.W.3    Villeval, J.L.4    Shivdasani, R.A.5
  • 33
    • 79959403008 scopus 로고    scopus 로고
    • BINOCh: Binding inference from nucleosome occupancy changes
    • Meyer C. A, He HH, Brown M, Liu XS. 2011. BINOCh: binding inference from nucleosome occupancy changes. Bioinformatics 27: 1867-1868.
    • (2011) Bioinformatics , vol.27 , pp. 1867-1868
    • Meyer, C.A.1    He, H.H.2    Brown, M.3    Liu, X.S.4
  • 37
    • 0033151624 scopus 로고    scopus 로고
    • Direct interaction of hematopoietic transcription factors PU.1 and GATA-1: Functional antagonism in erythroid cells
    • Rekhtman N., Radparvar F, Evans T, Skoultchi AI. 1999. Direct interaction of hematopoietic transcription factors PU.1 and GATA-1: functional antagonism in erythroid cells. Genes Dev 13: 1398-1411.
    • (1999) Genes Dev , vol.13 , pp. 1398-1411
    • Rekhtman, N.1    Radparvar, F.2    Evans, T.3    Skoultchi, A.I.4
  • 41
    • 0029051295 scopus 로고
    • Transcription factor NF-E2 is required for platelet formation independent of the actions of thrombopoietin/MGDF in megakaryocyte development
    • Shivdasani R. A, Rosenblatt MF, Zucker-Franklin D, Jackson CW, Hunt P., Saris CJ, Orkin SH. 1995. Transcription factor NF-E2 is required for platelet formation independent of the actions of thrombopoietin/MGDF in megakaryocyte development. Cell 81: 695-704.
    • (1995) Cell , vol.81 , pp. 695-704
    • Shivdasani, R.A.1    Rosenblatt, M.F.2    Zucker-Franklin, D.3    Jackson, C.W.4    Hunt, P.5    Saris, C.J.6    Orkin, S.H.7
  • 42
    • 0030926006 scopus 로고    scopus 로고
    • A lineage-selective knockout establishes the critical role of transcription factor GATA-1 in megakaryocyte growth and platelet development
    • Shivdasani R. A, Fujiwara Y, McDevitt MA, Orkin SH. 1997. A lineage-selective knockout establishes the critical role of transcription factor GATA-1 in megakaryocyte growth and platelet development. EMBO J 16: 3965-3973.
    • (1997) EMBO J , vol.16 , pp. 3965-3973
    • Shivdasani, R.A.1    Fujiwara, Y.2    McDevitt, M.A.3    Orkin, S.H.4
  • 43
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • Smyth G.K. 2004. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: 1544-6115.
    • (2004) Stat Appl Genet Mol Biol , vol.3 , pp. 1544-6115
    • Smyth, G.K.1
  • 45
    • 34250217913 scopus 로고    scopus 로고
    • Mast cell lineage diversion of T lineage precursors by the essential T cell transcription factor GATA-3
    • Taghon T., Yui MA, Rothenberg EV. 2007. Mast cell lineage diversion of T lineage precursors by the essential T cell transcription factor GATA-3. Nat Immunol 8: 845-855.
    • (2007) Nat Immunol , vol.8 , pp. 845-855
    • Taghon, T.1    Yui, M.A.2    Rothenberg, E.V.3
  • 50
    • 0002947085 scopus 로고
    • The epigenotype
    • Waddington C.H. 1942. The epigenotype. Endeavour 1: 18-20.
    • (1942) Endeavour , vol.1 , pp. 18-20
    • Waddington, C.H.1
  • 55
    • 84880426365 scopus 로고    scopus 로고
    • Developmental biology. Enhancing pluripotency and lineage specification
    • Xie W., Ren B. 2013. Developmental biology. Enhancing pluripotency and lineage specification. Science 341: 245-247.
    • (2013) Science , vol.341 , pp. 245-247
    • Xie, W.1    Ren, B.2
  • 56
    • 2542455620 scopus 로고    scopus 로고
    • Stepwise reprogramming of B cells into macrophages
    • Xie H., Ye M, Feng R, Graf T. 2004. Stepwise reprogramming of B cells into macrophages. Cell 117: 663-676.
    • (2004) Cell , vol.117 , pp. 663-676
    • Xie, H.1    Ye, M.2    Feng, R.3    Graf, T.4
  • 59
    • 67650711619 scopus 로고    scopus 로고
    • A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
    • Zang C., Schones DE, Zeng C, Cui K, Zhao K, Peng W. 2009. A clustering approach for identification of enriched domains from histone modification ChIP-Seq data. Bioinformatics 25: 1952-1958.
    • (2009) Bioinformatics , vol.25 , pp. 1952-1958
    • Zang, C.1    Schones, D.E.2    Zeng, C.3    Cui, K.4    Zhao, K.5    Peng, W.6
  • 61
    • 57449095143 scopus 로고    scopus 로고
    • Identifying positioned nucleosomes with epigenetic marks in human from ChIP-Seq
    • Zhang Y., Shin H, Song JS, Lei Y, Liu XS. 2008b. Identifying positioned nucleosomes with epigenetic marks in human from ChIP-Seq. BMC Genomics 9: 537.
    • (2008) BMC Genomics , vol.9 , pp. 537
    • Zhang, Y.1    Shin, H.2    Song, J.S.3    Lei, Y.4    Liu, X.S.5
  • 62
    • 84859157183 scopus 로고    scopus 로고
    • Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity
    • Zhang J. A, Mortazavi A, Williams BA, Wold BJ, Rothenberg EV. 2012. Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity. Cell 149: 467-482.
    • (2012) Cell , vol.149 , pp. 467-482
    • Zhang, J.A.1    Mortazavi, A.2    Williams, B.A.3    Wold, B.J.4    Rothenberg, E.V.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.