-
1
-
-
38149030843
-
Biobutanol: An attractive biofuel
-
P. Durre Biobutanol: an attractive biofuel Biotechnol. J. 2 2007 1525 1534
-
(2007)
Biotechnol. J.
, vol.2
, pp. 1525-1534
-
-
Durre, P.1
-
2
-
-
34249993002
-
Butanol production from agricultural residues: Impact of degradation products on Clostridium beijerinckii growth and butanol fermentation
-
T. Ezeji, N. Qureshi, and H.P. Blaschek Butanol production from agricultural residues: impact of degradation products on Clostridium beijerinckii growth and butanol fermentation Biotechnol. Bioeng. 97 2007 1460 1469
-
(2007)
Biotechnol. Bioeng.
, vol.97
, pp. 1460-1469
-
-
Ezeji, T.1
Qureshi, N.2
Blaschek, H.P.3
-
3
-
-
0022970603
-
Acetone-butanol fermentation revisited
-
D.T. Jones, and D.R. Woods Acetone-butanol fermentation revisited Microbiol. Rev. 50 1986 484 524
-
(1986)
Microbiol. Rev.
, vol.50
, pp. 484-524
-
-
Jones, D.T.1
Woods, D.R.2
-
4
-
-
0022357670
-
Effects of butanol on Clostridium acetobutylicum
-
L.K. Bowles, and W.L. Ellefson Effects of butanol on Clostridium acetobutylicum Appl. Environ. Microbiol. 50 1985 1165 1170
-
(1985)
Appl. Environ. Microbiol.
, vol.50
, pp. 1165-1170
-
-
Bowles, L.K.1
Ellefson, W.L.2
-
5
-
-
0021353391
-
Effect of butanol on lipid-composition and fluidity of Clostridium acetobutylicum ATCC 824
-
K. Vollherbstschneck, J.A. Sands, and B.S. Montenecourt Effect of butanol on lipid-composition and fluidity of Clostridium acetobutylicum ATCC 824 Appl. Environ. Microbiol. 47 1984 193 194
-
(1984)
Appl. Environ. Microbiol.
, vol.47
, pp. 193-194
-
-
Vollherbstschneck, K.1
Sands, J.A.2
Montenecourt, B.S.3
-
6
-
-
84878907848
-
Discovery of a novel gene involved in autolysis of Clostridium cells
-
L. Yang, G. Bao, Y. Zhu, H. Dong, Y. Zhang, and Y. Li Discovery of a novel gene involved in autolysis of Clostridium cells Protein Cell 4 2013 467 474
-
(2013)
Protein Cell
, vol.4
, pp. 467-474
-
-
Yang, L.1
Bao, G.2
Zhu, Y.3
Dong, H.4
Zhang, Y.5
Li, Y.6
-
7
-
-
77950629484
-
Metabolite stress and tolerance in the production of biofuels and chemicals: Gene-expression-based systems analysis of butanol, butyrate, and acetate stresses in the anaerobe Clostridium acetobutylicum
-
K.V. Alsaker, C. Paredes, and E.T. Papoutsakis Metabolite stress and tolerance in the production of biofuels and chemicals: gene-expression-based systems analysis of butanol, butyrate, and acetate stresses in the anaerobe Clostridium acetobutylicum Biotechnol. Bioeng. 105 2010 1131 1147
-
(2010)
Biotechnol. Bioeng.
, vol.105
, pp. 1131-1147
-
-
Alsaker, K.V.1
Paredes, C.2
Papoutsakis, E.T.3
-
8
-
-
77954604280
-
Proteome reference map and comparative proteomic analysis between a wild type Clostridium acetobutylicum DSM 1731 and its mutant with enhanced butanol tolerance and butanol yield
-
S.M. Mao, Y.A.M. Luo, T.R. Zhang, J.S. Li, G.A.H. Bao, Y. Zhu, Z.G. Chen, Y.P. Zhang, Y. Li, and Y.H. Ma Proteome reference map and comparative proteomic analysis between a wild type Clostridium acetobutylicum DSM 1731 and its mutant with enhanced butanol tolerance and butanol yield J. Proteome Res. 9 2010 3046 3061
-
(2010)
J. Proteome Res.
, vol.9
, pp. 3046-3061
-
-
Mao, S.M.1
Luo, Y.A.M.2
Zhang, T.R.3
Li, J.S.4
Bao, G.A.H.5
Zhu, Y.6
Chen, Z.G.7
Zhang, Y.P.8
Li, Y.9
Ma, Y.H.10
-
9
-
-
79954526956
-
Comparative analysis on the membrane proteome of Clostridium acetobutylicum wild type strain and its butanol-tolerant mutant
-
S.M. Mao, Y.M. Luo, G.H. Bao, Y.P. Zhang, Y. Li, and Y.H. Ma Comparative analysis on the membrane proteome of Clostridium acetobutylicum wild type strain and its butanol-tolerant mutant Mol. BioSyst. 7 2011 1660 1677
-
(2011)
Mol. BioSyst.
, vol.7
, pp. 1660-1677
-
-
Mao, S.M.1
Luo, Y.M.2
Bao, G.H.3
Zhang, Y.P.4
Li, Y.5
Ma, Y.H.6
-
11
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
D.R. Zerbino, and E. Birney Velvet: algorithms for de novo short read assembly using de Bruijn graphs Genome Res. 18 2008 821 829
-
(2008)
Genome Res.
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
12
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
S. Kurtz, A. Phillippy, A.L. Delcher, M. Smoot, M. Shumway, C. Antonescu, and S.L. Salzberg Versatile and open software for comparing large genomes Genome Biol. 5 2 2004 R12
-
(2004)
Genome Biol.
, vol.5
, Issue.2
, pp. 12
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
Smoot, M.4
Shumway, M.5
Antonescu, C.6
Salzberg, S.L.7
-
13
-
-
0032519353
-
GeneMark.hmm: New solutions for gene finding
-
A.V. Lukashin, and M. Borodovsky GeneMark.hmm: new solutions for gene finding Nucleic Acids Res. 26 1998 1107 1115
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 1107-1115
-
-
Lukashin, A.V.1
Borodovsky, M.2
-
14
-
-
0030854739
-
TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
T.M. Lowe, and S.R. Eddy TRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence Nucleic Acids Res. 25 1997 955 964
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
15
-
-
77957151956
-
SolexaQA: At-A-glance quality assessment of Illumina second-generation sequencing data
-
M.P. Cox, D.A. Peterson, and P.J. Biggs SolexaQA: at-A-glance quality assessment of Illumina second-generation sequencing data BMC Bioinform. 11 2010 485
-
(2010)
BMC Bioinform.
, vol.11
, pp. 485
-
-
Cox, M.P.1
Peterson, D.A.2
Biggs, P.J.3
-
16
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
H. Li, and R. Durbin Fast and accurate short read alignment with Burrows-Wheeler transform Bioinformatics 25 2009 1754 1760
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
17
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
H. Li, B. Handsaker, A. Wysoker, T. Fennell, J. Ruan, N. Homer, G. Marth, G. Abecasis, R. Durbin, and G.P.D. Proc The sequence alignment/map format and SAMtools Bioinformatics 25 2009 2078 2079
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
Proc, G.P.D.10
-
18
-
-
80052516578
-
Complete genome sequence of Clostridium acetobutylicum DSM 1731, a solvent-producing strain with multireplicon genome architecture
-
G. Bao, R. Wang, Y. Zhu, H. Dong, S. Mao, Y. Zhang, Z. Chen, Y. Li, and Y. Ma Complete genome sequence of Clostridium acetobutylicum DSM 1731, a solvent-producing strain with multireplicon genome architecture J. Bacteriol. 193 2011 5007 5008
-
(2011)
J. Bacteriol.
, vol.193
, pp. 5007-5008
-
-
Bao, G.1
Wang, R.2
Zhu, Y.3
Dong, H.4
Mao, S.5
Zhang, Y.6
Chen, Z.7
Li, Y.8
Ma, Y.9
-
19
-
-
29444451565
-
Changing the specificity of a bacterial chemoreceptor
-
P. Derr, E. Boder, and M. Goulian Changing the specificity of a bacterial chemoreceptor J. Mol. Biol. 355 2006 923 932
-
(2006)
J. Mol. Biol.
, vol.355
, pp. 923-932
-
-
Derr, P.1
Boder, E.2
Goulian, M.3
-
20
-
-
0025326727
-
Compilation of small ribosomal subunit RNA sequences
-
J.M. Neefs, Y. Van de Peer, L. Hendriks, and R. De Wachter Compilation of small ribosomal subunit RNA sequences Nucleic Acids Res. 18 Suppl. 1990 2237 2317
-
(1990)
Nucleic Acids Res.
, vol.18
, Issue.SUPPL.
, pp. 2237-2317
-
-
Neefs, J.M.1
Van De Peer, Y.2
Hendriks, L.3
De Wachter, R.4
-
21
-
-
0029789623
-
A quantitative map of nucleotide substitution rates in bacterial rRNA
-
Y. Van de Peer, S. Chapelle, and R. De Wachter A quantitative map of nucleotide substitution rates in bacterial rRNA Nucleic Acids Res. 24 1996 3381 3391
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 3381-3391
-
-
Van De Peer, Y.1
Chapelle, S.2
De Wachter, R.3
-
22
-
-
84859786131
-
Rchange: Algorithms for computing energy changes of RNA secondary structures in response to base mutations
-
H. Kiryu, and K. Asai Rchange: algorithms for computing energy changes of RNA secondary structures in response to base mutations Bioinformatics 28 8 2012 1093 1101
-
(2012)
Bioinformatics
, vol.28
, Issue.8
, pp. 1093-1101
-
-
Kiryu, H.1
Asai, K.2
-
23
-
-
0038782128
-
DNA array-based transcriptional analysis of asporogenous, nonsolventogenic Clostridium acetobutylicum strains SKO1 and M5
-
C.A. Tomas, K.V. Alsaker, H.P. Bonarius, W.T. Hendriksen, H. Yang, J.A. Beamish, C.J. Paredes, and E.T. Papoutsakis DNA array-based transcriptional analysis of asporogenous, nonsolventogenic Clostridium acetobutylicum strains SKO1 and M5 J. Bacteriol. 185 2003 4539 4547
-
(2003)
J. Bacteriol.
, vol.185
, pp. 4539-4547
-
-
Tomas, C.A.1
Alsaker, K.V.2
Bonarius, H.P.3
Hendriksen, W.T.4
Yang, H.5
Beamish, J.A.6
Paredes, C.J.7
Papoutsakis, E.T.8
-
24
-
-
1842403743
-
Mutation at position 791 in Escherichia-coli 16s ribosomal-RNA affects processes involved in the initiation of protein-synthesis
-
W.E. Tapprich, D.J. Goss, and A.E. Dahlberg Mutation at position 791 in Escherichia-coli 16s ribosomal-RNA affects processes involved in the initiation of protein-synthesis Proc. Natl. Acad. Sci. U.S.A. 86 1989 4927 4931
-
(1989)
Proc. Natl. Acad. Sci. U.S.A.
, vol.86
, pp. 4927-4931
-
-
Tapprich, W.E.1
Goss, D.J.2
Dahlberg, A.E.3
-
25
-
-
34347344063
-
From microbial differentiation to ribosome engineering
-
K. Ochi From microbial differentiation to ribosome engineering Biosci. Biotechnol. Biochem. 71 2007 1373 1386
-
(2007)
Biosci. Biotechnol. Biochem.
, vol.71
, pp. 1373-1386
-
-
Ochi, K.1
-
26
-
-
84887028426
-
Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress
-
Q. Wang, K.P. Venkataramanan, H. Huang, E.T. Papoutsakis, and C.H. Wu Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress BMC Syst. Biol. 7 2013 120
-
(2013)
BMC Syst. Biol.
, vol.7
, pp. 120
-
-
Wang, Q.1
Venkataramanan, K.P.2
Huang, H.3
Papoutsakis, E.T.4
Wu, C.H.5
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