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Volumn 450, Issue 4, 2014, Pages 1612-1618

Comparative genomic and proteomic analyses of Clostridium acetobutylicum Rh8 and its parent strain DSM 1731 revealed new understandings on butanol tolerance

Author keywords

Butanol tolerance; Clostridium acetobutylicum; Comparative genomics; Comparative proteomics

Indexed keywords

BUTANOL TOLERANCE; CLOSTRIDIUM ACETOBUTYLICUM; COMPARATIVE GENOMICS; COMPARATIVE PROTEOMICS;

EID: 84906097277     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2014.07.052     Document Type: Article
Times cited : (10)

References (26)
  • 1
    • 38149030843 scopus 로고    scopus 로고
    • Biobutanol: An attractive biofuel
    • P. Durre Biobutanol: an attractive biofuel Biotechnol. J. 2 2007 1525 1534
    • (2007) Biotechnol. J. , vol.2 , pp. 1525-1534
    • Durre, P.1
  • 2
    • 34249993002 scopus 로고    scopus 로고
    • Butanol production from agricultural residues: Impact of degradation products on Clostridium beijerinckii growth and butanol fermentation
    • T. Ezeji, N. Qureshi, and H.P. Blaschek Butanol production from agricultural residues: impact of degradation products on Clostridium beijerinckii growth and butanol fermentation Biotechnol. Bioeng. 97 2007 1460 1469
    • (2007) Biotechnol. Bioeng. , vol.97 , pp. 1460-1469
    • Ezeji, T.1    Qureshi, N.2    Blaschek, H.P.3
  • 3
    • 0022970603 scopus 로고
    • Acetone-butanol fermentation revisited
    • D.T. Jones, and D.R. Woods Acetone-butanol fermentation revisited Microbiol. Rev. 50 1986 484 524
    • (1986) Microbiol. Rev. , vol.50 , pp. 484-524
    • Jones, D.T.1    Woods, D.R.2
  • 4
    • 0022357670 scopus 로고
    • Effects of butanol on Clostridium acetobutylicum
    • L.K. Bowles, and W.L. Ellefson Effects of butanol on Clostridium acetobutylicum Appl. Environ. Microbiol. 50 1985 1165 1170
    • (1985) Appl. Environ. Microbiol. , vol.50 , pp. 1165-1170
    • Bowles, L.K.1    Ellefson, W.L.2
  • 5
    • 0021353391 scopus 로고
    • Effect of butanol on lipid-composition and fluidity of Clostridium acetobutylicum ATCC 824
    • K. Vollherbstschneck, J.A. Sands, and B.S. Montenecourt Effect of butanol on lipid-composition and fluidity of Clostridium acetobutylicum ATCC 824 Appl. Environ. Microbiol. 47 1984 193 194
    • (1984) Appl. Environ. Microbiol. , vol.47 , pp. 193-194
    • Vollherbstschneck, K.1    Sands, J.A.2    Montenecourt, B.S.3
  • 6
    • 84878907848 scopus 로고    scopus 로고
    • Discovery of a novel gene involved in autolysis of Clostridium cells
    • L. Yang, G. Bao, Y. Zhu, H. Dong, Y. Zhang, and Y. Li Discovery of a novel gene involved in autolysis of Clostridium cells Protein Cell 4 2013 467 474
    • (2013) Protein Cell , vol.4 , pp. 467-474
    • Yang, L.1    Bao, G.2    Zhu, Y.3    Dong, H.4    Zhang, Y.5    Li, Y.6
  • 7
    • 77950629484 scopus 로고    scopus 로고
    • Metabolite stress and tolerance in the production of biofuels and chemicals: Gene-expression-based systems analysis of butanol, butyrate, and acetate stresses in the anaerobe Clostridium acetobutylicum
    • K.V. Alsaker, C. Paredes, and E.T. Papoutsakis Metabolite stress and tolerance in the production of biofuels and chemicals: gene-expression-based systems analysis of butanol, butyrate, and acetate stresses in the anaerobe Clostridium acetobutylicum Biotechnol. Bioeng. 105 2010 1131 1147
    • (2010) Biotechnol. Bioeng. , vol.105 , pp. 1131-1147
    • Alsaker, K.V.1    Paredes, C.2    Papoutsakis, E.T.3
  • 8
    • 77954604280 scopus 로고    scopus 로고
    • Proteome reference map and comparative proteomic analysis between a wild type Clostridium acetobutylicum DSM 1731 and its mutant with enhanced butanol tolerance and butanol yield
    • S.M. Mao, Y.A.M. Luo, T.R. Zhang, J.S. Li, G.A.H. Bao, Y. Zhu, Z.G. Chen, Y.P. Zhang, Y. Li, and Y.H. Ma Proteome reference map and comparative proteomic analysis between a wild type Clostridium acetobutylicum DSM 1731 and its mutant with enhanced butanol tolerance and butanol yield J. Proteome Res. 9 2010 3046 3061
    • (2010) J. Proteome Res. , vol.9 , pp. 3046-3061
    • Mao, S.M.1    Luo, Y.A.M.2    Zhang, T.R.3    Li, J.S.4    Bao, G.A.H.5    Zhu, Y.6    Chen, Z.G.7    Zhang, Y.P.8    Li, Y.9    Ma, Y.H.10
  • 9
    • 79954526956 scopus 로고    scopus 로고
    • Comparative analysis on the membrane proteome of Clostridium acetobutylicum wild type strain and its butanol-tolerant mutant
    • S.M. Mao, Y.M. Luo, G.H. Bao, Y.P. Zhang, Y. Li, and Y.H. Ma Comparative analysis on the membrane proteome of Clostridium acetobutylicum wild type strain and its butanol-tolerant mutant Mol. BioSyst. 7 2011 1660 1677
    • (2011) Mol. BioSyst. , vol.7 , pp. 1660-1677
    • Mao, S.M.1    Luo, Y.M.2    Bao, G.H.3    Zhang, Y.P.4    Li, Y.5    Ma, Y.H.6
  • 11
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • D.R. Zerbino, and E. Birney Velvet: algorithms for de novo short read assembly using de Bruijn graphs Genome Res. 18 2008 821 829
    • (2008) Genome Res. , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 13
    • 0032519353 scopus 로고    scopus 로고
    • GeneMark.hmm: New solutions for gene finding
    • A.V. Lukashin, and M. Borodovsky GeneMark.hmm: new solutions for gene finding Nucleic Acids Res. 26 1998 1107 1115
    • (1998) Nucleic Acids Res. , vol.26 , pp. 1107-1115
    • Lukashin, A.V.1    Borodovsky, M.2
  • 14
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • T.M. Lowe, and S.R. Eddy TRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence Nucleic Acids Res. 25 1997 955 964
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 15
    • 77957151956 scopus 로고    scopus 로고
    • SolexaQA: At-A-glance quality assessment of Illumina second-generation sequencing data
    • M.P. Cox, D.A. Peterson, and P.J. Biggs SolexaQA: at-A-glance quality assessment of Illumina second-generation sequencing data BMC Bioinform. 11 2010 485
    • (2010) BMC Bioinform. , vol.11 , pp. 485
    • Cox, M.P.1    Peterson, D.A.2    Biggs, P.J.3
  • 16
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • H. Li, and R. Durbin Fast and accurate short read alignment with Burrows-Wheeler transform Bioinformatics 25 2009 1754 1760
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 18
    • 80052516578 scopus 로고    scopus 로고
    • Complete genome sequence of Clostridium acetobutylicum DSM 1731, a solvent-producing strain with multireplicon genome architecture
    • G. Bao, R. Wang, Y. Zhu, H. Dong, S. Mao, Y. Zhang, Z. Chen, Y. Li, and Y. Ma Complete genome sequence of Clostridium acetobutylicum DSM 1731, a solvent-producing strain with multireplicon genome architecture J. Bacteriol. 193 2011 5007 5008
    • (2011) J. Bacteriol. , vol.193 , pp. 5007-5008
    • Bao, G.1    Wang, R.2    Zhu, Y.3    Dong, H.4    Mao, S.5    Zhang, Y.6    Chen, Z.7    Li, Y.8    Ma, Y.9
  • 19
    • 29444451565 scopus 로고    scopus 로고
    • Changing the specificity of a bacterial chemoreceptor
    • P. Derr, E. Boder, and M. Goulian Changing the specificity of a bacterial chemoreceptor J. Mol. Biol. 355 2006 923 932
    • (2006) J. Mol. Biol. , vol.355 , pp. 923-932
    • Derr, P.1    Boder, E.2    Goulian, M.3
  • 21
    • 0029789623 scopus 로고    scopus 로고
    • A quantitative map of nucleotide substitution rates in bacterial rRNA
    • Y. Van de Peer, S. Chapelle, and R. De Wachter A quantitative map of nucleotide substitution rates in bacterial rRNA Nucleic Acids Res. 24 1996 3381 3391
    • (1996) Nucleic Acids Res. , vol.24 , pp. 3381-3391
    • Van De Peer, Y.1    Chapelle, S.2    De Wachter, R.3
  • 22
    • 84859786131 scopus 로고    scopus 로고
    • Rchange: Algorithms for computing energy changes of RNA secondary structures in response to base mutations
    • H. Kiryu, and K. Asai Rchange: algorithms for computing energy changes of RNA secondary structures in response to base mutations Bioinformatics 28 8 2012 1093 1101
    • (2012) Bioinformatics , vol.28 , Issue.8 , pp. 1093-1101
    • Kiryu, H.1    Asai, K.2
  • 24
    • 1842403743 scopus 로고
    • Mutation at position 791 in Escherichia-coli 16s ribosomal-RNA affects processes involved in the initiation of protein-synthesis
    • W.E. Tapprich, D.J. Goss, and A.E. Dahlberg Mutation at position 791 in Escherichia-coli 16s ribosomal-RNA affects processes involved in the initiation of protein-synthesis Proc. Natl. Acad. Sci. U.S.A. 86 1989 4927 4931
    • (1989) Proc. Natl. Acad. Sci. U.S.A. , vol.86 , pp. 4927-4931
    • Tapprich, W.E.1    Goss, D.J.2    Dahlberg, A.E.3
  • 25
    • 34347344063 scopus 로고    scopus 로고
    • From microbial differentiation to ribosome engineering
    • K. Ochi From microbial differentiation to ribosome engineering Biosci. Biotechnol. Biochem. 71 2007 1373 1386
    • (2007) Biosci. Biotechnol. Biochem. , vol.71 , pp. 1373-1386
    • Ochi, K.1
  • 26
    • 84887028426 scopus 로고    scopus 로고
    • Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress
    • Q. Wang, K.P. Venkataramanan, H. Huang, E.T. Papoutsakis, and C.H. Wu Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress BMC Syst. Biol. 7 2013 120
    • (2013) BMC Syst. Biol. , vol.7 , pp. 120
    • Wang, Q.1    Venkataramanan, K.P.2    Huang, H.3    Papoutsakis, E.T.4    Wu, C.H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.