메뉴 건너뛰기




Volumn 111, Issue 4, 2014, Pages 781-789

DNA methylation status is more reliable than gene expression at detecting cancer in prostate biopsy

Author keywords

450K Infinium Methylation BeadChip; biomarker; DNA methylation; gene expression; prostate cancer

Indexed keywords

MESSENGER RNA; TUMOR MARKER;

EID: 84906087876     PISSN: 00070920     EISSN: 15321827     Source Type: Journal    
DOI: 10.1038/bjc.2014.337     Document Type: Article
Times cited : (70)

References (50)
  • 1
    • 84879512613 scopus 로고    scopus 로고
    • Differentially expressed androgen-regulated genes in androgen-sensitive tissues reveal potential biomarkers of early prostate cancer
    • Altintas DM, Allioli N, Decaussin M, de Bernard S, Ruffion A, Samarut J, Vlaeminck-Guillem V (2013) Differentially expressed androgen-regulated genes in androgen-sensitive tissues reveal potential biomarkers of early prostate cancer. PLoS One 8: e66278.
    • (2013) PLoS One , vol.8
    • Altintas, D.M.1    Allioli, N.2    Decaussin, M.3    De Bernard, S.4    Ruffion, A.5    Samarut, J.6    Vlaeminck-Guillem, V.7
  • 3
    • 0033991986 scopus 로고    scopus 로고
    • A comparative analysis of sextant and an extended 11-core multisite directed biopsy strategy
    • Babaian RJ, Toi A, Kamoi K, Troncoso P, Sweet J, Evans R, Johnston D, Chen M (2000) A comparative analysis of sextant and an extended 11-core multisite directed biopsy strategy. J Urol 163: 152-157.
    • (2000) J Urol , vol.163 , pp. 152-157
    • Babaian, R.J.1    Toi, A.2    Kamoi, K.3    Troncoso, P.4    Sweet, J.5    Evans, R.6    Johnston, D.7    Chen, M.8
  • 4
    • 84879436659 scopus 로고    scopus 로고
    • Molecular diagnosis of prostate cancer: Are we up to age?
    • Bhavsar T, McCue P, Birbe R (2013) Molecular diagnosis of prostate cancer: are we up to age? Semin Oncol 40: 259-275.
    • (2013) Semin Oncol , vol.40 , pp. 259-275
    • Bhavsar, T.1    McCue, P.2    Birbe, R.3
  • 6
    • 84882449183 scopus 로고    scopus 로고
    • APC gene hypermethylation and prostate cancer: A systematic review and meta-analysis
    • Chen Y, Li J, Yu X, Li S, Zhang X, Mo Z, Hu Y (2013) APC gene hypermethylation and prostate cancer: a systematic review and meta-analysis. Eur J Hum Genet 21: 929-935.
    • (2013) Eur J Hum Genet , vol.21 , pp. 929-935
    • Chen, Y.1    Li, J.2    Yu, X.3    Li, S.4    Zhang, X.5    Mo, Z.6    Hu, Y.7
  • 7
    • 84886435218 scopus 로고    scopus 로고
    • Common gene pathways and families altered by DNA methylation in breast and prostate cancers
    • Day TK, Bianco-Miotto T (2013) Common gene pathways and families altered by DNA methylation in breast and prostate cancers. Endocr Relat Cancer 20: R215-R232.
    • (2013) Endocr Relat Cancer , vol.20
    • Day, T.K.1    Bianco-Miotto, T.2
  • 9
    • 17144388686 scopus 로고    scopus 로고
    • Individualization of the biopsy protocol according to the prostate gland volume for prostate cancer detection
    • Eskicorapci SY, Guliyev F, Akdogan B, Dogan HS, Ergen A, Ozen H (2005) Individualization of the biopsy protocol according to the prostate gland volume for prostate cancer detection. J Urol 173: 1536-1540.
    • (2005) J Urol , vol.173 , pp. 1536-1540
    • Eskicorapci, S.Y.1    Guliyev, F.2    Akdogan, B.3    Dogan, H.S.4    Ergen, A.5    Ozen, H.6
  • 10
    • 0035514945 scopus 로고    scopus 로고
    • Prostate cancer detection with two sets of ten-core compared with two sets of sextant biopsies
    • Fink KG, Hutarew G, Lumper W, Jungwirth A, Dietze O, Schmeller NT (2001) Prostate cancer detection with two sets of ten-core compared with two sets of sextant biopsies. Urology 58: 735-739.
    • (2001) Urology , vol.58 , pp. 735-739
    • Fink, K.G.1    Hutarew, G.2    Lumper, W.3    Jungwirth, A.4    Dietze, O.5    Schmeller, N.T.6
  • 12
    • 0031317538 scopus 로고    scopus 로고
    • Benign mimics of prostatic adenocarcinoma on needle biopsy
    • Gaudin PB, Reuter VE (1997) Benign mimics of prostatic adenocarcinoma on needle biopsy. Anat Pathol 2: 111-134.
    • (1997) Anat Pathol , vol.2 , pp. 111-134
    • Gaudin, P.B.1    Reuter, V.E.2
  • 14
    • 84859953293 scopus 로고    scopus 로고
    • DNA methylation changes in prostate cancer
    • Goering W, Kloth M, Schulz WA (2012) DNA methylation changes in prostate cancer. Methods Mol Biol 863: 47-66.
    • (2012) Methods Mol Biol , vol.863 , pp. 47-66
    • Goering, W.1    Kloth, M.2    Schulz, W.A.3
  • 16
    • 0024393833 scopus 로고
    • Random systematic versus directed ultrasound guided transrectal core biopsies of the prostate (discussion 74-75)
    • Hodge KK, McNeal JE, Terris MK, Stamey TA (1989) Random systematic versus directed ultrasound guided transrectal core biopsies of the prostate. J Urol 142: 71-74 (discussion 74-75).
    • (1989) J Urol , vol.142 , pp. 71-74
    • Hodge, K.K.1    McNeal, J.E.2    Terris, M.K.3    Stamey, T.A.4
  • 17
    • 84892401240 scopus 로고    scopus 로고
    • Biomarker selection for medical diagnosis using the partial area under the ROC curve
    • Hsu M-J, Chang Y-CI, Hsueh H-M (2014) Biomarker selection for medical diagnosis using the partial area under the ROC curve. BMC Res Notes 7: 25.
    • (2014) BMC Res Notes , vol.7 , pp. 25
    • Hsu, M.-J.1    Y-Ci, C.2    Hsueh, H.-M.3
  • 18
    • 84896404455 scopus 로고    scopus 로고
    • Importance of HOX genes in normal prostate gland formation, prostate cancer development and its early detection
    • Javed S, Langley SEM (2013) Importance of HOX genes in normal prostate gland formation, prostate cancer development and its early detection. BJU Int 113: 535-540.
    • (2013) BJU Int , vol.113 , pp. 535-540
    • Javed, S.1    Langley, S.E.M.2
  • 20
    • 30344442487 scopus 로고    scopus 로고
    • Saturation technique does not improve cancer detection as an initial prostate biopsy strategy
    • Jones JS, Patel A, Schoenfield L, Rabets JC, Zippe CD, Magi-Galluzzi C (2006) Saturation technique does not improve cancer detection as an initial prostate biopsy strategy. J Urol 175: 485-488.
    • (2006) J Urol , vol.175 , pp. 485-488
    • Jones, J.S.1    Patel, A.2    Schoenfield, L.3    Rabets, J.C.4    Zippe, C.D.5    Magi-Galluzzi, C.6
  • 23
    • 79960320144 scopus 로고    scopus 로고
    • EFEMP1 as a novel DNA methylation marker for prostate cancer: Array-based DNA methylation and expression profiling
    • Kim Y-J, Yoon H-Y, Kim S-K, Kim Y-W, Kim E-J, Kim IY, Kim W-J (2011b) EFEMP1 as a novel DNA methylation marker for prostate cancer: array-based DNA methylation and expression profiling. Clin Cancer Res 17: 4523-4530.
    • (2011) Clin Cancer Res , vol.17 , pp. 4523-4530
    • Kim, Y.-J.1    Yoon, H.-Y.2    Kim, S.-K.3    Kim, Y.-W.4    Kim, E.-J.5    Kim, I.Y.6    Kim, W.-J.7
  • 25
    • 26044460461 scopus 로고    scopus 로고
    • The use of receiver operating characteristic curves in biomedical informatics
    • Lasko TA, Bhagwat JG, Zou KH, Ohno-Machado L (2005) The use of receiver operating characteristic curves in biomedical informatics. J Biomed Inform 38: 404-415.
    • (2005) J Biomed Inform , vol.38 , pp. 404-415
    • Lasko, T.A.1    Bhagwat, J.G.2    Zou, K.H.3    Ohno-Machado, L.4
  • 26
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
    • Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25: 402-408.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 27
    • 84884190970 scopus 로고    scopus 로고
    • Current challenges in development of differentially expressed and prognostic prostate cancer biomarkers
    • Lucas SM, Heath EI (2012) Current challenges in development of differentially expressed and prognostic prostate cancer biomarkers. Prostate Cancer 2012: 640968.
    • (2012) Prostate Cancer , vol.2012 , pp. 640968
    • Lucas, S.M.1    Heath, E.I.2
  • 28
    • 84877625868 scopus 로고    scopus 로고
    • The role of combined measurement of tissue mRNA levels of AMACR and survivin in the diagnosis and risk stratification of patients with suspected prostate cancer
    • Al-Maghrebi M, Kehinde EO, Anim JT, Sheikh M (2012) The role of combined measurement of tissue mRNA levels of AMACR and survivin in the diagnosis and risk stratification of patients with suspected prostate cancer. Int Urol Nephrol 44: 1681-1689.
    • (2012) Int Urol Nephrol , vol.44 , pp. 1681-1689
    • Al-Maghrebi, M.1    Kehinde, E.O.2    Anim, J.T.3    Sheikh, M.4
  • 29
    • 40949128823 scopus 로고    scopus 로고
    • Genome-wide analysis of the homeobox C6 transcriptional network in prostate cancer
    • McCabe CD, Spyropoulos DD, Martin D, Moreno CS (2008) Genome-wide analysis of the homeobox C6 transcriptional network in prostate cancer. Cancer Res 68: 1988-1996.
    • (2008) Cancer Res , vol.68 , pp. 1988-1996
    • McCabe, C.D.1    Spyropoulos, D.D.2    Martin, D.3    Moreno, C.S.4
  • 30
    • 79958116710 scopus 로고    scopus 로고
    • Integrating proteomic and transcriptomic high-throughput surveys for search of new biomarkers of colon tumors
    • Mikula M, Rubel T, Karczmarski J, Goryca K, Dadlez M, Ostrowski J (2011) Integrating proteomic and transcriptomic high-throughput surveys for search of new biomarkers of colon tumors. Funct Integr Genomics 11: 215-224.
    • (2011) Funct Integr Genomics , vol.11 , pp. 215-224
    • Mikula, M.1    Rubel, T.2    Karczmarski, J.3    Goryca, K.4    Dadlez, M.5    Ostrowski, J.6
  • 32
    • 37349099074 scopus 로고    scopus 로고
    • Saturation prostate needle biopsy and prostate cancer detection at initial and repeat evaluation
    • Pepe P, Aragona F (2007) Saturation prostate needle biopsy and prostate cancer detection at initial and repeat evaluation. Urology 70: 1131-1135.
    • (2007) Urology , vol.70 , pp. 1131-1135
    • Pepe, P.1    Aragona, F.2
  • 33
    • 3242774622 scopus 로고    scopus 로고
    • Prostate cancer detection with office based saturation biopsy in a repeat biopsy population
    • Rabets JC, Jones JS, Patel A, Zippe CD (2004) Prostate cancer detection with office based saturation biopsy in a repeat biopsy population. J Urol 172: 94-97.
    • (2004) J Urol , vol.172 , pp. 94-97
    • Rabets, J.C.1    Jones, J.S.2    Patel, A.3    Zippe, C.D.4
  • 35
    • 84872031690 scopus 로고    scopus 로고
    • The long and winding road to FDA approval of a novel prostate cancer test: Our story
    • Rittenhouse H, Blase A, Shamel B, Schalken J, Groskopf J (2013) The long and winding road to FDA approval of a novel prostate cancer test: our story. Clin Chem 59: 32-34.
    • (2013) Clin Chem , vol.59 , pp. 32-34
    • Rittenhouse, H.1    Blase, A.2    Shamel, B.3    Schalken, J.4    Groskopf, J.5
  • 40
    • 78049286314 scopus 로고    scopus 로고
    • Modeling oncogenic signaling in colon tumors by multidirectional analyses of microarray data directed for maximization of analytical reliability
    • Skrzypczak M, Goryca K, Rubel T, Paziewska A, Mikula M, Jarosz D, Pachlewski J, Oledzki J, Ostrowski J (2010) Modeling oncogenic signaling in colon tumors by multidirectional analyses of microarray data directed for maximization of analytical reliability. PLoS One 5: e13091.
    • (2010) PLoS One , vol.5
    • Skrzypczak, M.1    Goryca, K.2    Rubel, T.3    Paziewska, A.4    Mikula, M.5    Jarosz, D.6    Pachlewski, J.7    Oledzki, J.8    Ostrowski, J.9
  • 41
    • 74749083645 scopus 로고    scopus 로고
    • Discovery of prostate cancer biomarkers by microarray gene expression profiling
    • Sørensen KD, Ørntoft TF (2010) Discovery of prostate cancer biomarkers by microarray gene expression profiling. Expert Rev Mol Diagn 10: 49-64.
    • (2010) Expert Rev Mol Diagn , vol.10 , pp. 49-64
    • Sørensen, K.D.1    Ørntoft, T.F.2
  • 42
    • 0032451119 scopus 로고    scopus 로고
    • Prostate rebiopsy is a poor surrogate of treatment efficacy in localized prostate cancer
    • Svetec D, McCabe K, Peretsman S, Klein E, Levin H, Optenberg S, Thompson I (1998) Prostate rebiopsy is a poor surrogate of treatment efficacy in localized prostate cancer. J Urol 159: 1606-1608.
    • (1998) J Urol , vol.159 , pp. 1606-1608
    • Svetec, D.1    McCabe, K.2    Peretsman, S.3    Klein, E.4    Levin, H.5    Optenberg, S.6    Thompson, I.7
  • 43
    • 84872564830 scopus 로고    scopus 로고
    • A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data
    • Teschendorff AE, Marabita F, Lechner M, Bartlett T, Tegner J, Gomez-Cabrero D, Beck S (2013) A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data. Bioinformatics 29: 189-196.
    • (2013) Bioinformatics , vol.29 , pp. 189-196
    • Teschendorff, A.E.1    Marabita, F.2    Lechner, M.3    Bartlett, T.4    Tegner, J.5    Gomez-Cabrero, D.6    Beck, S.7
  • 44
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 3: RESEARCH0034.
    • (2002) Genome Biol , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 45
    • 0031905976 scopus 로고    scopus 로고
    • A model for the number of cores per prostate biopsy based on patient age and prostate gland volume
    • Vashi AR, Wojno KJ, Gillespie B, Oesterling JE (1998) A model for the number of cores per prostate biopsy based on patient age and prostate gland volume. J Urol 159: 920-924.
    • (1998) J Urol , vol.159 , pp. 920-924
    • Vashi, A.R.1    Wojno, K.J.2    Gillespie, B.3    Oesterling, J.E.4
  • 47
    • 84859320008 scopus 로고    scopus 로고
    • PrimerBank: A PCR primer database for quantitative gene expression analysis 2012 update
    • Wang X, Spandidos A, Wang H, Seed B (2011) PrimerBank: a PCR primer database for quantitative gene expression analysis, 2012 update. Nucleic Acids Res 40: D1144-D1149.
    • (2011) Nucleic Acids Res , vol.40
    • Wang, X.1    Spandidos, A.2    Wang, H.3    Seed, B.4
  • 49
    • 84878186526 scopus 로고    scopus 로고
    • Regulators of gene expression as biomarkers for prostate cancer
    • Willard SS, Koochekpour S (2012) Regulators of gene expression as biomarkers for prostate cancer. Am J Cancer Res 2: 620-657.
    • (2012) Am J Cancer Res , vol.2 , pp. 620-657
    • Willard, S.S.1    Koochekpour, S.2
  • 50
    • 84875641446 scopus 로고    scopus 로고
    • Methylation profiling defines an extensive field defect in histologically normal prostate tissues associated with prostate cancer
    • Yang B, Bhusari S, Kueck J, Weeratunga P, Wagner J, Leverson G, Huang W, Jarrard DF (2013) Methylation profiling defines an extensive field defect in histologically normal prostate tissues associated with prostate cancer. Neoplasia 15: 399-408.
    • (2013) Neoplasia , vol.15 , pp. 399-408
    • Yang, B.1    Bhusari, S.2    Kueck, J.3    Weeratunga, P.4    Wagner, J.5    Leverson, G.6    Huang, W.7    Jarrard, D.F.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.