-
1
-
-
77956518398
-
Viability determination of Helicobacter pylori using propidium monoazide Quantitative PCR
-
Agusti, G., F. Codony, M. Fittipaldi, B. Adrados, and J. Morato. 2010. Viability determination of Helicobacter pylori using propidium monoazide Quantitative PCR. Helicobacter 15:473-476.
-
(2010)
Helicobacter
, vol.15
, pp. 473-476
-
-
Agusti, G.1
Codony, F.2
Fittipaldi, M.3
Adrados, B.4
Morato, J.5
-
2
-
-
78751648558
-
Longitudinal characterization of antimicrobial resistance genes in feces shed from cattle fed different subtherapeutic antibiotics
-
Alexander, T. W., J. L. Yanke, T. Reuter, E. Topp, R. R. Read, B. L. Selinger, et al. 2011. Longitudinal characterization of antimicrobial resistance genes in feces shed from cattle fed different subtherapeutic antibiotics. BMC Microbiol. 11:19.
-
(2011)
BMC Microbiol.
, vol.11
, pp. 19
-
-
Alexander, T.W.1
Yanke, J.L.2
Reuter, T.3
Topp, E.4
Read, R.R.5
Selinger, B.L.6
-
3
-
-
0028946084
-
Phylogenetic identification and in-situ detection of individual microbial-cells without cultivation
-
Amann, R. I., W. Ludwig, and K. H. Schleifer. 1995. Phylogenetic identification and in-situ detection of individual microbial-cells without cultivation. Microbiol. Rev. 59:143-169.
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
4
-
-
80051548159
-
Storage conditions and animal source influence the dominant bacterial community composition in animal manure
-
Arthurson, V. 2011. Storage conditions and animal source influence the dominant bacterial community composition in animal manure. World J. Microbiol. Biotechnol. 27:2013-2022.
-
(2011)
World J. Microbiol. Biotechnol.
, vol.27
, pp. 2013-2022
-
-
Arthurson, V.1
-
5
-
-
84859580431
-
Positive and negative selection towards tetracycline resistance genes in manure treatment lagoons
-
Barkovskii, A. L., K. M. Manoylov, and C. Bridges. 2012. Positive and negative selection towards tetracycline resistance genes in manure treatment lagoons. J. Appl. Microbiol. 112:907-919.
-
(2012)
J. Appl. Microbiol.
, vol.112
, pp. 907-919
-
-
Barkovskii, A.L.1
Manoylov, K.M.2
Bridges, C.3
-
6
-
-
84859559554
-
Methanoculleus spp. as a biomarker of methanogenic activity in swine manure storage tanks
-
Barret, M., N. Gagnon, B. Morissette, E. Topp, M. Kalmokoff, S. P. J. Brooks, et al. 2012. Methanoculleus spp. as a biomarker of methanogenic activity in swine manure storage tanks. FEMS Microbiol. Ecol. 80:427-440.
-
(2012)
FEMS Microbiol. Ecol.
, vol.80
, pp. 427-440
-
-
Barret, M.1
Gagnon, N.2
Morissette, B.3
Topp, E.4
Kalmokoff, M.5
Brooks, S.P.J.6
-
7
-
-
0035065898
-
A strategy for optimizing quality and quantity of DNA extracted from soil
-
Burgmann, H., M. Pesaro, F. Widmer, and J. Zeyer. 2001. A strategy for optimizing quality and quantity of DNA extracted from soil. J. Microbiol. Methods 45:7-20.
-
(2001)
J. Microbiol. Methods
, vol.45
, pp. 7-20
-
-
Burgmann, H.1
Pesaro, M.2
Widmer, F.3
Zeyer, J.4
-
8
-
-
84876423097
-
Accumulation of pharmaceuticals, Enterococcus, and resistance genes in soils irrigated with wastewater for zero to 100 years in central Mexico
-
Dalkmann, P., M. Broszat, C. Siebe, E. Willaschek, T. Sakinc, J. Huebner, et al. 2012. Accumulation of pharmaceuticals, Enterococcus, and resistance genes in soils irrigated with wastewater for zero to 100 years in central Mexico. PLoS One 7:e45397.
-
(2012)
PLoS One
, vol.7
-
-
Dalkmann, P.1
Broszat, M.2
Siebe, C.3
Willaschek, E.4
Sakinc, T.5
Huebner, J.6
-
9
-
-
78449264898
-
An evaluation of commercial DNA extraction kits for the isolation of bacterial spore DNA from soil
-
Dineen, S. M., R. Aranda, D. L. Anders, and J. M. Robertson. 2010. An evaluation of commercial DNA extraction kits for the isolation of bacterial spore DNA from soil. J. Appl. Microbiol. 109:1886-1896.
-
(2010)
J. Appl. Microbiol.
, vol.109
, pp. 1886-1896
-
-
Dineen, S.M.1
Aranda, R.2
Anders, D.L.3
Robertson, J.M.4
-
10
-
-
0030063913
-
Denaturing gradient gel electrophoresis profiles of 16S rDNA-defined population inhabiting a hot spring microbial mat community
-
Ferris, M. J., G. Muyzer, and D. M. Ward. 1996. Denaturing gradient gel electrophoresis profiles of 16S rDNA-defined population inhabiting a hot spring microbial mat community. Appl. Environ. Microbiol. 62:340-346.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 340-346
-
-
Ferris, M.J.1
Muyzer, G.2
Ward, D.M.3
-
11
-
-
0030872620
-
Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis
-
Godon, J. J., E. Zumstein, P. Dabert, F. Habouzit, and R. Moletta. 1997. Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis. Appl. Environ. Microbiol. 63:2802-2813.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 2802-2813
-
-
Godon, J.J.1
Zumstein, E.2
Dabert, P.3
Habouzit, F.4
Moletta, R.5
-
12
-
-
33644849737
-
Persistence of Mycobacterium avium subsp paratuberculosis and other zoonotic pathogens during simulated composting, manure packing, and liquid storage of dairy manure
-
Grewal, S. K., S. Rajeev, S. Sreevatsan, and F. C. Michel. 2006. Persistence of Mycobacterium avium subsp paratuberculosis and other zoonotic pathogens during simulated composting, manure packing, and liquid storage of dairy manure. Appl. Environ. Microbiol. 72:565-574.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 565-574
-
-
Grewal, S.K.1
Rajeev, S.2
Sreevatsan, S.3
Michel, F.C.4
-
13
-
-
84883625478
-
Evaluation of inhibitor-resistant real-time PCR methods for diagnostics in clinical and environmental samples
-
Hall, A. T., A. M. Zovanyi, D. R. Christensen, J. W. Koehler, and T. D. Minogue. 2013. Evaluation of inhibitor-resistant real-time PCR methods for diagnostics in clinical and environmental samples. PLoS One 8:e73845.
-
(2013)
PLoS One
, vol.8
-
-
Hall, A.T.1
Zovanyi, A.M.2
Christensen, D.R.3
Koehler, J.W.4
Minogue, T.D.5
-
14
-
-
33846948962
-
Manure and sulfadiazine synergistically increased bacterial antibiotic resistance in soil over at least two months
-
Heuer, H., and K. Smalla. 2007. Manure and sulfadiazine synergistically increased bacterial antibiotic resistance in soil over at least two months. Environ. Microbiol. 9:657-666.
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 657-666
-
-
Heuer, H.1
Smalla, K.2
-
15
-
-
55149118025
-
STR typing from human faeces: a modified DNA extraction method
-
in B Brinkman, A Carracedo, eds
-
Iacovacci, G., A. Serafini, A. Berti, G. Lago, 2003. STR typing from human faeces: a modified DNA extraction method. Pp. 917-920 in B. Brinkman, A. Carracedo, eds. Progress in forensic genetics 9: 917-920.
-
(2003)
Progress in forensic genetics 9
, pp. 917-920
-
-
Iacovacci, G.1
Serafini, A.2
Berti, A.3
Lago, G.4
-
16
-
-
84874111903
-
Comparison of commercial kits for the extraction of DNA from paddy soils
-
Knauth, S., H. Schmidt, and R. Tippkoetter. 2013. Comparison of commercial kits for the extraction of DNA from paddy soils. Lett. Appl. Microbiol. 56:222-228.
-
(2013)
Lett. Appl. Microbiol.
, vol.56
, pp. 222-228
-
-
Knauth, S.1
Schmidt, H.2
Tippkoetter, R.3
-
17
-
-
32044463785
-
Representational difference analysis and real-time PCR for strain-specific quantification of Lactobacillus sobrius sp nov
-
Konstantinov, S. R., H. Smidt, and W. M. de Vos. 2005. Representational difference analysis and real-time PCR for strain-specific quantification of Lactobacillus sobrius sp nov. Appl. Environ. Microbiol. 71:7578-7581.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 7578-7581
-
-
Konstantinov, S.R.1
Smidt, H.2
de Vos, W.M.3
-
18
-
-
33845603602
-
Comparative analysis of environmental DNA extraction and purification methods from different humic acid-rich soils
-
Lakay, F. M., A. Botha, and B. A. Prior. 2007. Comparative analysis of environmental DNA extraction and purification methods from different humic acid-rich soils. J. Appl. Microbiol. 102:265-273.
-
(2007)
J. Appl. Microbiol.
, vol.102
, pp. 265-273
-
-
Lakay, F.M.1
Botha, A.2
Prior, B.A.3
-
19
-
-
0035956602
-
Bacterial community dynamics in liquid swine manure during storage: molecular analysis using DGGE/PCR of 16S rDNA
-
Leung, K., and E. Topp. 2001. Bacterial community dynamics in liquid swine manure during storage: molecular analysis using DGGE/PCR of 16S rDNA. FEMS Microbiol. Ecol. 38:169-177.
-
(2001)
FEMS Microbiol. Ecol.
, vol.38
, pp. 169-177
-
-
Leung, K.1
Topp, E.2
-
20
-
-
37149028813
-
Real-time PCR for detection of low intensity Schistosoma japonicum infections in a pig model
-
Lier, T., M. V. Johansen, S. O. Hjelmevoll, B. J. Vennervald, and G. S. Simonsen. 2008. Real-time PCR for detection of low intensity Schistosoma japonicum infections in a pig model. Acta Trop. 105:74-80.
-
(2008)
Acta Trop.
, vol.105
, pp. 74-80
-
-
Lier, T.1
Johansen, M.V.2
Hjelmevoll, S.O.3
Vennervald, B.J.4
Simonsen, G.S.5
-
21
-
-
84867038897
-
Methanogenic potential of formate in thermophilic anaerobic digestion
-
Lins, P., T. Schwarzenauer, C. Reitschuler, A. O. Wagner, and P. Illmer. 2012. Methanogenic potential of formate in thermophilic anaerobic digestion. Waste Manage. Res. 30:1031-1040.
-
(2012)
Waste Manage. Res.
, vol.30
, pp. 1031-1040
-
-
Lins, P.1
Schwarzenauer, T.2
Reitschuler, C.3
Wagner, A.O.4
Illmer, P.5
-
22
-
-
60049090175
-
The structure of the bacterial and archaeal community in a biogas digester as revealed by denaturing gradient gel electrophoresis and 16S rDNA sequencing analysis
-
Liu, F. H., S. B. Wang, J. S. Zhang, J. Zhang, X. Yan, H. K. Zhou, et al. 2009. The structure of the bacterial and archaeal community in a biogas digester as revealed by denaturing gradient gel electrophoresis and 16S rDNA sequencing analysis. J. Appl. Microbiol. 106:952-966.
-
(2009)
J. Appl. Microbiol.
, vol.106
, pp. 952-966
-
-
Liu, F.H.1
Wang, S.B.2
Zhang, J.S.3
Zhang, J.4
Yan, X.5
Zhou, H.K.6
-
23
-
-
67651248056
-
Pig manure contamination marker selection based on the influence of biological treatment on the dominant fecal microbial groups
-
Marti, R., P. Dabert, and A.-M. Pourcher. 2009. Pig manure contamination marker selection based on the influence of biological treatment on the dominant fecal microbial groups. Appl. Environ. Microbiol. 75:4967-4974.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 4967-4974
-
-
Marti, R.1
Dabert, P.2
Pourcher, A.-M.3
-
24
-
-
77649220428
-
Evaluation of Lactobacillus sobrius/L-amylovorus as a new microbial marker of pig manure
-
Marti, R., P. Dabert, C. Ziebal, and A. M. Pourcher. 2010. Evaluation of Lactobacillus sobrius/L-amylovorus as a new microbial marker of pig manure. Appl. Environ. Microbiol. 76:1456-1461.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 1456-1461
-
-
Marti, R.1
Dabert, P.2
Ziebal, C.3
Pourcher, A.M.4
-
25
-
-
3242782685
-
Identification of bacterial populations in dairy wastewaters by use of 16S rRNA gene sequences and other genetic markers
-
McGarvey, J. A., W. G. Miller, S. Sanchez, and L. Stanker. 2004. Identification of bacterial populations in dairy wastewaters by use of 16S rRNA gene sequences and other genetic markers. Appl. Environ. Microbiol. 70:4267-4275.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 4267-4275
-
-
McGarvey, J.A.1
Miller, W.G.2
Sanchez, S.3
Stanker, L.4
-
26
-
-
0036242883
-
A comparison of five methods for extraction of bacterial DNA from human faecal samples
-
McOrist, A. L., M. Jackson, and A. R. Bird. 2002. A comparison of five methods for extraction of bacterial DNA from human faecal samples. J. Microbiol. Methods 50:131-139.
-
(2002)
J. Microbiol. Methods
, vol.50
, pp. 131-139
-
-
McOrist, A.L.1
Jackson, M.2
Bird, A.R.3
-
27
-
-
66249125965
-
Estimation of pig fecal contamination in a river catchment by real-time PCR using two pig-specific bacteroidales 16S rRNA genetic markers
-
Mieszkin, S., J.-P. Furet, G. Corthier, and M. Gourmelon. 2009. Estimation of pig fecal contamination in a river catchment by real-time PCR using two pig-specific bacteroidales 16S rRNA genetic markers. Appl. Environ. Microbiol. 75:3045-3054.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 3045-3054
-
-
Mieszkin, S.1
Furet, J.-P.2
Corthier, G.3
Gourmelon, M.4
-
28
-
-
1242344661
-
Methane productivity of manure, straw and solid fractions of manure
-
Moller, H. B., S. G. Sommer, and B. Ahring. 2004. Methane productivity of manure, straw and solid fractions of manure. Biomass Bioenergy 26:485-495.
-
(2004)
Biomass Bioenergy
, vol.26
, pp. 485-495
-
-
Moller, H.B.1
Sommer, S.G.2
Ahring, B.3
-
29
-
-
33646598649
-
Dynamics of a pig slurry microbial community during anaerobic storage and management
-
Peu, P., H. Brugere, A. M. Pourcher, M. Kerouredan, J. J. Godon, J. P. Delgenes, et al. 2006. Dynamics of a pig slurry microbial community during anaerobic storage and management. Appl. Environ. Microbiol. 72:3578-3585.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 3578-3585
-
-
Peu, P.1
Brugere, H.2
Pourcher, A.M.3
Kerouredan, M.4
Godon, J.J.5
Delgenes, J.P.6
-
30
-
-
33748905416
-
Long-term effects of amendment with liquid swine manure on proton binding behavior of soil humic substances
-
Plaza, C., D. Hernandez, J. M. Fernandez, and A. Polo. 2006. Long-term effects of amendment with liquid swine manure on proton binding behavior of soil humic substances. Chemosphere 65:1321-1329.
-
(2006)
Chemosphere
, vol.65
, pp. 1321-1329
-
-
Plaza, C.1
Hernandez, D.2
Fernandez, J.M.3
Polo, A.4
-
31
-
-
79951970367
-
Bacterial communities in aerosols and manure samples from two different dairies in central and Sonoma valleys of California
-
Ravva, S. V., C. Z. Sarreal, and R. E. Mandrell. 2011. Bacterial communities in aerosols and manure samples from two different dairies in central and Sonoma valleys of California. PLoS One 6:e17281.
-
(2011)
PLoS One
, vol.6
-
-
Ravva, S.V.1
Sarreal, C.Z.2
Mandrell, R.E.3
-
32
-
-
77951977802
-
Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: Effective recovery of bacterial and archaeal DNA using mechanical cell lysis
-
Salonen, A., J. Nikkila, J. Jalanka-Tuovinen, O. Immonen, M. Rajilic-Stojanovic, R. A. Kekkonen, et al. 2010. Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: Effective recovery of bacterial and archaeal DNA using mechanical cell lysis. J. Microbiol. Methods 81:127-134.
-
(2010)
J. Microbiol. Methods
, vol.81
, pp. 127-134
-
-
Salonen, A.1
Nikkila, J.2
Jalanka-Tuovinen, J.3
Immonen, O.4
Rajilic-Stojanovic, M.5
Kekkonen, R.A.6
-
33
-
-
56649086758
-
Development and comparison of SYBR Green quantitative real-time PCR assays for detection and enumeration of sulfate-reducing bacteria in stored swine manure
-
Spence, C., T. R. Whitehead, and M. A. Cotta. 2008. Development and comparison of SYBR Green quantitative real-time PCR assays for detection and enumeration of sulfate-reducing bacteria in stored swine manure. J. Appl. Microbiol. 105:2143-2152.
-
(2008)
J. Appl. Microbiol.
, vol.105
, pp. 2143-2152
-
-
Spence, C.1
Whitehead, T.R.2
Cotta, M.A.3
-
34
-
-
55149118400
-
An effective method for isolation of DNA from pig faeces and comparison of five different methods
-
Tang, J.-N., Z.-G. Zeng, H.-N. Wang, T. Yang, P.-J. Zhang, Y.-L. Li, et al. 2008. An effective method for isolation of DNA from pig faeces and comparison of five different methods. J. Microbiol. Methods 75:432-436.
-
(2008)
J. Microbiol. Methods
, vol.75
, pp. 432-436
-
-
Tang, J.-N.1
Zeng, Z.-G.2
Wang, H.-N.3
Yang, T.4
Zhang, P.-J.5
Li, Y.-L.6
-
35
-
-
79960080969
-
Selective quantification of viable Escherichia coli bacteria in biosolids by quantitative PCR with propidium monoazide modification
-
Taskin, B., A. G. Gozen, and M. Duran. 2011. Selective quantification of viable Escherichia coli bacteria in biosolids by quantitative PCR with propidium monoazide modification. Appl. Environ. Microbiol. 77:4329-4335.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 4329-4335
-
-
Taskin, B.1
Gozen, A.G.2
Duran, M.3
-
36
-
-
77956440758
-
Novel perspectives to purify genomic DNA from high humic acid content and contaminated soils
-
Techer, D., C. Martinez-Chois, M. D'Innocenzo, P. Laval-Gilly, A. Bennasroune, L. Foucaud, et al. 2010. Novel perspectives to purify genomic DNA from high humic acid content and contaminated soils. Sep. Purif. Technol. 75:81-86.
-
(2010)
Sep. Purif. Technol.
, vol.75
, pp. 81-86
-
-
Techer, D.1
Martinez-Chois, C.2
D'Innocenzo, M.3
Laval-Gilly, P.4
Bennasroune, A.5
Foucaud, L.6
-
37
-
-
34548204320
-
Development of a swine-specific fecal pollution marker based on host differences in methanogen mcrA genes
-
Ufnar, J. A., D. F. Ufnar, S. Y. Wang, and R. D. Ellender. 2007. Development of a swine-specific fecal pollution marker based on host differences in methanogen mcrA genes. Appl. Environ. Microbiol. 73:5209-5217.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 5209-5217
-
-
Ufnar, J.A.1
Ufnar, D.F.2
Wang, S.Y.3
Ellender, R.D.4
-
38
-
-
77955848942
-
Bacterial community analysis of activated sludge: an evaluation of four commonly used DNA extraction methods
-
Vanysacker, L., S. A. J. Declerck, B. Hellemans, L. De Meester, I. Vankelecom, and P. Declerck. 2010. Bacterial community analysis of activated sludge: an evaluation of four commonly used DNA extraction methods. Appl. Microbiol. Biotechnol. 88:299-307.
-
(2010)
Appl. Microbiol. Biotechnol.
, vol.88
, pp. 299-307
-
-
Vanysacker, L.1
Declerck, S.A.J.2
Hellemans, B.3
De Meester, L.4
Vankelecom, I.5
Declerck, P.6
-
39
-
-
0026067797
-
16S ribosomal dna amplification for phylogenetic study
-
Weisburg, W. G., S. M. Barns, D. A. Pelletier, and D. J. Lane. 1991. 16S ribosomal dna amplification for phylogenetic study. J. Bacteriol. 173:697-703.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 697-703
-
-
Weisburg, W.G.1
Barns, S.M.2
Pelletier, D.A.3
Lane, D.J.4
-
40
-
-
33846057772
-
Comparison of five commercial DNA extraction kits for the recovery of Francisella tularensis DNA from spiked soil samples
-
Whitehouse, C. A., and H. E. Hottel. 2007. Comparison of five commercial DNA extraction kits for the recovery of Francisella tularensis DNA from spiked soil samples. Mol. Cell. Probes 21:92-96.
-
(2007)
Mol. Cell. Probes
, vol.21
, pp. 92-96
-
-
Whitehouse, C.A.1
Hottel, H.E.2
-
41
-
-
0345195995
-
Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis
-
von Wintzingerode, F., U. B. Gobel, and E. Stackebrandt. 1997. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol. Rev. 21:213-229.
-
(1997)
FEMS Microbiol. Rev.
, vol.21
, pp. 213-229
-
-
von Wintzingerode, F.1
Gobel, U.B.2
Stackebrandt, E.3
-
42
-
-
70149105502
-
Strategy for extracting DNA from clay soil and detecting a specific target sequence via selective enrichment and real-time (quantitative) PCR amplification
-
Yankson, K. K., and T. R. Steck. 2009. Strategy for extracting DNA from clay soil and detecting a specific target sequence via selective enrichment and real-time (quantitative) PCR amplification. Appl. Environ. Microbiol. 75:6017-6021.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 6017-6021
-
-
Yankson, K.K.1
Steck, T.R.2
|