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Volumn 80, Issue 2, 2012, Pages 427-440

Methanoculleus spp. as a biomarker of methanogenic activity in swine manure storage tanks

Author keywords

Methanoculleus; Methanogenic archaea; Methyl coenzyme M reductase; Swine manure

Indexed keywords

METHANE;

EID: 84859559554     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2012.01308.x     Document Type: Article
Times cited : (36)

References (38)
  • 1
    • 45149092121 scopus 로고    scopus 로고
    • Are Archaea inherently less diverse than Bacteria in the same environments?
    • Aller JY & Kemp PF (2008) Are Archaea inherently less diverse than Bacteria in the same environments? FEMS Microbiol Ecol 65: 74-87.
    • (2008) FEMS Microbiol Ecol , vol.65 , pp. 74-87
    • Aller, J.Y.1    Kemp, P.F.2
  • 2
    • 0040497577 scopus 로고
    • Standard Methods for the Examination of Water and Wastewater, 18th edn
    • APHA, Washington, DC.
    • APHA (1992) Standard Methods for the Examination of Water and Wastewater, 18th edn. American Public Health Association, Washington, DC.
    • (1992) American Public Health Association
  • 3
    • 84859586143 scopus 로고    scopus 로고
    • National Inventory Report 1990-2008: Greenhouse Gas Sources and Sinks in Canada.
    • Blain D, Liang C & MacDonald D (2010) National Inventory Report 1990-2008: Greenhouse Gas Sources and Sinks in Canada.
    • (2010)
    • Blain, D.1    Liang, C.2    MacDonald, D.3
  • 4
    • 42549111788 scopus 로고    scopus 로고
    • The roles of acetotrophic and hydrogenotrophic methanogens during anaerobic conversion of biomass to methane: a review
    • Demirel B & Scherer P (2008) The roles of acetotrophic and hydrogenotrophic methanogens during anaerobic conversion of biomass to methane: a review. Rev Environ Sci Biotechnol 7: 173-190.
    • (2008) Rev Environ Sci Biotechnol , vol.7 , pp. 173-190
    • Demirel, B.1    Scherer, P.2
  • 5
    • 0031284508 scopus 로고    scopus 로고
    • Species assemblages and indicator species: the need for a flexible asymmetrical approach
    • Dufrêne M & Legendre P (1997) Species assemblages and indicator species: the need for a flexible asymmetrical approach. Ecol Monogr 67: 345-366.
    • (1997) Ecol Monogr , vol.67 , pp. 345-366
    • Dufrêne, M.1    Legendre, P.2
  • 6
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 7
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the Bootstrap
    • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the Bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 9
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny
    • Galtier N, Gouy M & Gautier C (1996) SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12: 543-548.
    • (1996) Comput Appl Biosci , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 11
    • 0034468557 scopus 로고    scopus 로고
    • Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition
    • Griffiths RI, Whiteley AS, O'Donnell AG & Bailey MJ (2000) Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Appl Environ Microbiol 66: 5488-5491.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5488-5491
    • Griffiths, R.I.1    Whiteley, A.S.2    O'Donnell, A.G.3    Bailey, M.J.4
  • 12
    • 79251506683 scopus 로고    scopus 로고
    • Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing
    • Jaenicke S, Ander C, Bekel T et al. (2011) Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing. PLoS ONE 6: e14519.
    • (2011) PLoS ONE , vol.6
    • Jaenicke, S.1    Ander, C.2    Bekel, T.3
  • 13
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • (Munro HN, ed) - Academic Press, New York.
    • Jukes TH & Cantor SR (1969) Evolution of protein molecules. In Mammalian Protein Metabolism (Munro HN, ed), pp. 81-132. Academic Press, New York.
    • (1969) Mammalian Protein Metabolism , pp. 81-132
    • Jukes, T.H.1    Cantor, S.R.2
  • 14
    • 67349232764 scopus 로고    scopus 로고
    • Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing
    • Kröber M, Bekel T, Diaz MN et al. (2009) Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing. J Biotechnol 142: 38-49.
    • (2009) J Biotechnol , vol.142 , pp. 38-49
    • Kröber, M.1    Bekel, T.2    Diaz, M.N.3
  • 15
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • (Stackebrandt EG ed) -, M. Wiley, Chichester, UK.
    • Lane DJ (1991) 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics (Stackebrandt EG ed), pp. 115-175, M. Wiley, Chichester, UK.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 16
    • 67349255717 scopus 로고    scopus 로고
    • The effect of stratification and seasonal variability on the profile of an anaerobic swine waste treatment lagoon
    • Lovanh N, Loughrin JH, Cook K, Rothrock M & Sistani K (2009) The effect of stratification and seasonal variability on the profile of an anaerobic swine waste treatment lagoon. Bioresour Technol 100: 3706-3712.
    • (2009) Bioresour Technol , vol.100 , pp. 3706-3712
    • Lovanh, N.1    Loughrin, J.H.2    Cook, K.3    Rothrock, M.4    Sistani, K.5
  • 17
    • 2542523843 scopus 로고    scopus 로고
    • ARB: a software environment for sequence data
    • Ludwig W, Strunk O, Westram R et al. (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32: 1363-1371.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1363-1371
    • Ludwig, W.1    Strunk, O.2    Westram, R.3
  • 18
    • 0038461967 scopus 로고    scopus 로고
    • Influence of treatment techniques for pig slurry on methane emissions during subsequent storage
    • Martinez J, Guiziou F, Peu P & Gueutier V (2003) Influence of treatment techniques for pig slurry on methane emissions during subsequent storage. Biosyst Eng 85: 347-354.
    • (2003) Biosyst Eng , vol.85 , pp. 347-354
    • Martinez, J.1    Guiziou, F.2    Peu, P.3    Gueutier, V.4
  • 19
    • 0345873289 scopus 로고    scopus 로고
    • Methane emissions from dairy cow and swine manure slurries stored at 10°C and 15°C
    • Massé DI, Croteau F, Patni NK & Masse L (2003) Methane emissions from dairy cow and swine manure slurries stored at 10°C and 15°C. Can Biosyst Eng 45: 6.1-6.6.
    • (2003) Can Biosyst Eng , vol.45 , pp. 61-66
    • Massé, D.I.1    Croteau, F.2    Patni, N.K.3    Masse, L.4
  • 23
    • 2342537118 scopus 로고    scopus 로고
    • Swine manure composition affects the biochemical origins, composition, and accumulation of odorous compounds
    • Miller DN & Varel VH (2003) Swine manure composition affects the biochemical origins, composition, and accumulation of odorous compounds. J Anim Sci 81: 2131-2138.
    • (2003) J Anim Sci , vol.81 , pp. 2131-2138
    • Miller, D.N.1    Varel, V.H.2
  • 24
    • 0037728516 scopus 로고    scopus 로고
    • A comparison of DNA profiling techniques for monitoring nutrient impact on microbial community composition during bioremediation of petroleum-contaminated soils
    • Mills DK, Fitzgerald K, Litchfield CD & Gillevet PM (2003) A comparison of DNA profiling techniques for monitoring nutrient impact on microbial community composition during bioremediation of petroleum-contaminated soils. J Microbiol Meth 54: 57-74.
    • (2003) J Microbiol Meth , vol.54 , pp. 57-74
    • Mills, D.K.1    Fitzgerald, K.2    Litchfield, C.D.3    Gillevet, P.M.4
  • 26
    • 78649505665 scopus 로고    scopus 로고
    • Methane emission patterns from stored liquid swine manure
    • Park KH & Wagner-Riddle C (2010) Methane emission patterns from stored liquid swine manure. Asian Australas J Anim Sci 23: 1229-1235.
    • (2010) Asian Australas J Anim Sci , vol.23 , pp. 1229-1235
    • Park, K.H.1    Wagner-Riddle, C.2
  • 28
    • 77952890663 scopus 로고    scopus 로고
    • Microbial community dynamics in anaerobic bioreactors and algal tanks treating piggery wastewater
    • Patil SS, Kumar MS & Ball AS (2010) Microbial community dynamics in anaerobic bioreactors and algal tanks treating piggery wastewater. Appl Microbiol Biotechnol 87: 353-363.
    • (2010) Appl Microbiol Biotechnol , vol.87 , pp. 353-363
    • Patil, S.S.1    Kumar, M.S.2    Ball, A.S.3
  • 29
    • 33644916651 scopus 로고    scopus 로고
    • Methane oxidation in pig and cattle slurry storages, and effects of surface crust moisture and methane availability
    • Petersen SO & Ambus P (2006) Methane oxidation in pig and cattle slurry storages, and effects of surface crust moisture and methane availability. Nutr Cycl Agroecosyst 74: 1-11.
    • (2006) Nutr Cycl Agroecosyst , vol.74 , pp. 1-11
    • Petersen, S.O.1    Ambus, P.2
  • 31
    • 57949108726 scopus 로고    scopus 로고
    • Bacterial community dynamics in an anaerobic plug-flow type bioreactor treating swine manure
    • Roy CS, Talbot G, Topp E, Beaulieu C, Palin MF & Massé DI (2009) Bacterial community dynamics in an anaerobic plug-flow type bioreactor treating swine manure. Water Res 43: 21-32.
    • (2009) Water Res , vol.43 , pp. 21-32
    • Roy, C.S.1    Talbot, G.2    Topp, E.3    Beaulieu, C.4    Palin, M.F.5    Massé, D.I.6
  • 32
    • 15244351941 scopus 로고    scopus 로고
    • Characterisation of the microbial diversity in a pig manure storage pit using small subunit rDNA sequence analysis
    • Snell-Castro R, Godon JJ, Delgenès JP & Dabert P (2005) Characterisation of the microbial diversity in a pig manure storage pit using small subunit rDNA sequence analysis. FEMS Microbiol Ecol 52: 229-242.
    • (2005) FEMS Microbiol Ecol , vol.52 , pp. 229-242
    • Snell-Castro, R.1    Godon, J.J.2    Delgenès, J.P.3    Dabert, P.4
  • 33
    • 0031790538 scopus 로고    scopus 로고
    • Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity
    • Suzuki M, Rappé MS & Giovannoni SJ (1998) Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity. Appl Environ Microbiol 64: 4522-4529.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 4522-4529
    • Suzuki, M.1    Rappé, M.S.2    Giovannoni, S.J.3
  • 35
    • 70449123859 scopus 로고    scopus 로고
    • Multivariate statistical analyses of rDNA and rRNA fingerprint data to differentiate microbial communities in swine manure
    • Talbot G, Roy CS, Topp E, Beaulieu C, Palin MF & Massé DI (2009) Multivariate statistical analyses of rDNA and rRNA fingerprint data to differentiate microbial communities in swine manure. FEMS Microbiol Ecol 70: 540-552.
    • (2009) FEMS Microbiol Ecol , vol.70 , pp. 540-552
    • Talbot, G.1    Roy, C.S.2    Topp, E.3    Beaulieu, C.4    Palin, M.F.5    Massé, D.I.6
  • 36
    • 0032860510 scopus 로고    scopus 로고
    • Phylogenetic diversity of methanogenic archaea in swine waste storage pits
    • Whitehead TR & Cotta MA (1999) Phylogenetic diversity of methanogenic archaea in swine waste storage pits. FEMS Microbiol Lett 179: 223-226.
    • (1999) FEMS Microbiol Lett , vol.179 , pp. 223-226
    • Whitehead, T.R.1    Cotta, M.A.2
  • 37
    • 0035189211 scopus 로고    scopus 로고
    • Characterisation and comparison of microbial populations in swine faeces and manure storage pits by 16S rDNA gene sequence analyses
    • Whitehead TR & Cotta MA (2001) Characterisation and comparison of microbial populations in swine faeces and manure storage pits by 16S rDNA gene sequence analyses. Anaerobe 7: 181-187.
    • (2001) Anaerobe , vol.7 , pp. 181-187
    • Whitehead, T.R.1    Cotta, M.A.2
  • 38
    • 78449311004 scopus 로고    scopus 로고
    • Diversity of methanogenic archaea in a biogas reactor fed with swine feces as the mono-substrate by mcrA analysis
    • Zhu C, Zhang J, Tang Y, Zhengkai X & Song R (2011) Diversity of methanogenic archaea in a biogas reactor fed with swine feces as the mono-substrate by mcrA analysis. Microbiol Res 166: 27-35.
    • (2011) Microbiol Res , vol.166 , pp. 27-35
    • Zhu, C.1    Zhang, J.2    Tang, Y.3    Zhengkai, X.4    Song, R.5


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