Halopolyspora alba gen. nov., sp. nov., isolated from sediment

International Journal of Systematic and Evolutionary Microbiology

Volumn 64, Issue PART 8, 2014, Pages 2775-2780

  Lai, Hangxian ^a   Wei, Xiaomin ^a   Jiang, Yingying ^a   Chen, Xiu ^b   Li, Qinyuan ^b   Jiang, Yi ^b   Jiang, Chenglin ^b   Gillerman, Leionid ^c  

^a NORTHWEST A F UNIVERSITY   (China)

^b YUNNAN UNIVERSITY   (China)

^c BEN GURION UNIVERSITY OF THE NEGEV   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

ARABINOSE; CARBOHYDRATE; CARDIOLIPIN; DIAMINO ACID; DIAMINOPIMELIC ACID; FATTY ACID DERIVATIVE; GALACTOSE; MENAQUINONE; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLINOSITOL; RNA 16S;

ARTICLE; BACTERIAL CELL WALL; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; GENE SEQUENCE; HALOPOLYSPORA ALBA; MOLECULAR PHYLOGENY; NOCARDIACEAE; NONHUMAN; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; PSEUDONOCARDIACEAE; SEA; SEDIMENT; SURFACE PROPERTY;

ACTINOMYCETALES; BACTERIAL TYPING TECHNIQUES; DIAMINOPIMELIC ACID; DNA, BACTERIAL; FATTY ACIDS; GEOLOGIC SEDIMENTS; ISRAEL; MOLECULAR SEQUENCE DATA; OCEANS AND SEAS; PHOSPHOLIPIDS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; VITAMIN K 2;

EID: 84906061672     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.057638-0     Document Type: Article

References (38)

1. Akutsu, T. (2000). Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots. Discrete Appl Math 104, 45-62.
2. Al-Zarban, S. S., Al-Musallam, A. A., Abbas, I., Stackebrandt, E. & Kroppenstedt, R. M. (2002). Saccharomonospora halophilasp. nov., a novel halophilic actinomycete isolated from marsh soil in Kuwait. Int J Syst Evol Microbiol 52, 555-558.
3. Bouthinon, D. & Soldano, H. (1999). A new method to predict the consensus secondary structure of a set of unaligned RNA sequences. Bioinformatics 15, 785-798.
4. Collins, M. D. (1994). Isoprenoid quinones. In Chemical Methods in Prokaryotic Systematics, pp. 265-309. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.
5. De Rijk, P. & De Wachter, R. (1997). RnaViz, a program for the visualisation of RNA secondary structure. Nucleic Acids Res 25, 4679-4684.
6. De Rijk, P., Wuyts, J. & De Wachter, R. (2003). RnaViz 2: an improved representation of RNA secondary structure. Bioinformatics 19, 299-300.
7. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
8. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
9. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
10. Gochnauer, M. B., Leppard, G. G., Komaratat, P., Kates, M., Novitsky, T. & Kushner, D. J. (1975). Isolation and characterization of Actinopolyspora halophila, gen. et sp. nov., an extremely halophilic actinomycete. Can J Microbiol 21, 1500-1511.
11. Goodfellow, M. & Trujillo, M. E. (2012) Order II. Actinopolysporales ord. nov. In Bergey's Manual of Systematic Bacteriology, 2nd edn, Vol. 5, pp. 162-163. Edited by M. Goodfellow, P. Kämpfer, H. J. Busse, M. E. Trujillo, K.-i. Suzuki, W. Ludwig & W. B. Whitman. New York: Springer.
12. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N. (1974). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54-63.
13. Guan, T. W., Liu, Y., Zhao, K., Xia, Z. F., Zhang, X. P. & Zhang, L. L. (2010). Actinopolyspora xinjiangensissp. nov., a novel exteremely halophilic actinomycete isolated from a salt lake in Xinjiang, China. Antonie van Leeuwenhoek 98, 447-453.
14. Guan, T. W., Wei, B., Zhang, Y., Xia, Z. F., Che, Z. M., Chen, X. G. & Zhang, L. L. (2013). Actinopolyspora lacussalsisp. nov., an extremely halophilic actinomycete isolated from a salt lake. Int J Syst Evol Microbiol 63, 3009-3013.
15. Kelly, K. L. (1964). Inter-Society Color Council-National Bureau of Standards Color Name Charts Illustrated with Centroid Colors. Washington, DC: US Government Printing Office.
16. Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & other authors (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
17. Kroppenstedt, R. M. (1982). Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases. J Liq Chromatogr 5, 2359-2367.
18. Li, W. J., Xu, P., Schumann, P., Zhang, Y. Q., Pukall, R., Xu, L. H., Stackebrandt, E. & Jiang, C. L. (2007). Georgenia ruaniisp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia. Int J Syst Evol Microbiol 57, 1424-1428.
19. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
20. Meklat, A., Bouras, N., Zitouni, A., Mathieu, F., Lebrihi, A., Schumann, P., Spröer, C., Klenk, H. P. & Sabaou, N. (2012). Actinopolyspora algeriensissp. nov., a novel halophilic actinomycete isolated from a Saharan soil. Extremophiles 16, 771-776.
21. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
22. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
23. Murray, R. G. E., Doetsch, R. N. & Robinow, C. F. (1994). Determinative and cytological light microscopy. In Methods for General and Molecular Bacteriology, pp. 22-41. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
24. Ruan, J. S., Al-Tai, A. M., Zhou, Z. H. & Qu, L. H. (1994). Actinopolyspora iraqiensissp. nov., a new halophilic actinomycete isolated from soil. Int J Syst Bacteriol 44, 759-763.
25. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
26. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20, 16.
27. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomycesspecies. Int J Syst Bacteriol 16, 313-340.
28. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
29. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteriaclassis nov. Int J Syst Bacteriol 47, 479-491.
30. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
31. Tang, S. K., Wang, Y., Chen, Y., Lou, K., Cao, L. L., Xu, L. H. & Li, W. J. (2009). Zhihengliuella albasp. nov., and emended description of the genusZhihengliuella. Int J Syst Evol Microbiol 59, 2025-2032.
32. Tang, S. K., Wang, Y., Klenk, H. P., Shi, R., Lou, K., Zhang, Y. J., Chen, C., Ruan, J. S. & Li, W. J. (2011). Actinopolyspora albasp. nov. andActinopolyspora erythraeasp. nov., isolated from a salt field, and reclassification of Actinopolyspora iraqiensisRuanet al. 1994 as a heterotypic synonym ofSaccharomonospora halophila. Int J Syst Evol Microbiol 61, 1693-1698.
33. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). TheCLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
34. Waksman, S. A. (1967). The Actinomycetes. A Summary of Current Knowledge. New York: Ronald Press.
35. Xu, P., Li, W. J., Tang, S. K., Zhang, Y. Q., Chen, G. Z., Chen, H. H., Xu, L. H. & Jiang, C. L. (2005). Naxibacter alkalitoleransgen. nov., sp. nov., a novel member of the family 'Oxalobacteraceae' isolated from China. Int J Syst Evol Microbiol 55, 1149-1153.
36. Xu, L. H., Li, W. J., Liu, Z. H. & Jiang, C. L. (2007). Actinomecete Systematics-Principle, Methods and Practice. Beijing: Academic Press.
37. Yoshida, M., Matsubara, J. S., Kudo, T. & Horikoshi, K. (1991). Actinopolyspora mortivallissp. nov., a moderately halophilic actinomycete. Int J Syst Bacteriol 41, 15-20.
38. Zhi, X. Y., Li, W. J. & Stackebrandt, E. (2009). An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa. Int J Syst Evol Microbiol 59, 589-608.