메뉴 건너뛰기




Volumn 64, Issue PART 8, 2014, Pages 2675-2681

Gramella oceani sp. nov., a zeaxanthin-producing bacterium of the family Flavobacteriaceae isolated from marine sediment

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; FARNOQUINONE; FATTY ACID; GENOMIC DNA; LIPID; PHOSPHATIDYLETHANOLAMINE; QUINONE DERIVATIVE; RNA 16S; ZEAXANTHIN;

EID: 84906057381     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.059881-0     Document Type: Article
Times cited : (22)

References (40)
  • 2
    • 33750907710 scopus 로고    scopus 로고
    • Whole genome analysis of the marineBacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter
    • Bauer, M., Kube, M., Teeling, H., Richter, M., Lombardot, T., Allers, E., Würdemann, C. A., Quast, C., Kuhl, H. & other authors (2006). Whole genome analysis of the marineBacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter. Environ Microbiol 8, 2201-2213.
    • (2006) Environ Microbiol , vol.8 , pp. 2201-2213
    • Bauer, M.1    Kube, M.2    Teeling, H.3    Richter, M.4    Lombardot, T.5    Allers, E.6    Würdemann, C.A.7    Quast, C.8    Kuhl, H.9
  • 3
    • 84857959724 scopus 로고    scopus 로고
    • Family I. FlavobacteriaceaeReichenbach
    • 2nd edn, Edited by N. R. Krieg, J. T. Staley, D. R. Brown, B. P. Hedlund, B. J. Paster, N. L. Ward, W. Ludwig & W. B. Whitman. New York: Springer
    • Bernardet, J.-F. (2011). Family I. FlavobacteriaceaeReichenbach 1992. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 4, pp. 106-111. Edited by N. R. Krieg, J. T. Staley, D. R. Brown, B. P. Hedlund, B. J. Paster, N. L. Ward, W. Ludwig & W. B. Whitman. New York: Springer.
    • (2011) Bergey's Manual of Systematic Bacteriology , vol.4 , pp. 106-111
    • Bernardet, J.-F.1
  • 4
    • 36549086376 scopus 로고    scopus 로고
    • An introduction to the family Flavobacteriaceae
    • 3rd edn, Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer
    • Bernardet, J.-F. & Nakagawa, Y. (2006). An introduction to the family Flavobacteriaceae. In The Prokaryotes: a Handbook on the Biology of Bacteria, 3rd edn, vol. 7, pp. 455-480. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
    • (2006) The Prokaryotes: A Handbook on the Biology of Bacteria , vol.7 , pp. 455-480
    • Bernardet, J.-F.1    Nakagawa, Y.2
  • 5
    • 0035989637 scopus 로고    scopus 로고
    • Proposed minimal standards for describing new taxa of the family Flavobacteriaceaeand emended description of the family
    • & Subcommittee on the taxonomy of FlavobacteriumandCytophaga-like bacteria of the International Committee on Systematics of Prokaryotes
    • Bernardet, J. F., Nakagawa, Y., Holmes, B. & Subcommittee on the taxonomy of FlavobacteriumandCytophaga-like bacteria of the International Committee on Systematics of Prokaryotes (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceaeand emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 1049-1070
    • Bernardet, J.F.1    Nakagawa, Y.2    Holmes, B.3
  • 6
    • 80355147288 scopus 로고    scopus 로고
    • Gramella gaetbulicola sp. nov., a member of the family Flavobacteriaceae isolated from foreshore soil
    • Cho, S. H., Chae, S. H., Cho, M., Kim, T. U., Choi, S., Han, J. H., Kim, Y. T., Joung, Y., Joh, K. & other authors (2011). Gramella gaetbulicola sp. nov., a member of the family Flavobacteriaceae isolated from foreshore soil. Int J Syst Evol Microbiol 61, 2654-2658.
    • (2011) Int J Syst Evol Microbiol , vol.61 , pp. 2654-2658
    • Cho, S.H.1    Chae, S.H.2    Cho, M.3    Kim, T.U.4    Choi, S.5    Han, J.H.6    Kim, Y.T.7    Joung, Y.8    Joh, K.9
  • 7
    • 77956867761 scopus 로고
    • Analysis of isoprenoid quinones
    • Collins, M. D. (1985). Analysis of isoprenoid quinones. Methods Microbiol 18, 329-366.
    • (1985) Methods Microbiol , vol.18 , pp. 329-366
    • Collins, M.D.1
  • 8
    • 0002701059 scopus 로고
    • Structural lipids of eubacteria
    • Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley
    • Embley, T. M. & Wait, R. (1994). Structural lipids of eubacteria. In Chemical Methods in Prokaryotic Systematics, pp. 121-161. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.
    • (1994) Chemical Methods in Prokaryotic Systematics , pp. 121-161
    • Embley, T.M.1    Wait, R.2
  • 9
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
    • (1981) J Mol Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 10
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 11
    • 84959747425 scopus 로고
    • Towards defining the course of evolution: Minimum change for a specific tree topology
    • Fitch, W. M. (1971). Towards defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
    • (1971) Syst Zool , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 12
    • 0008613229 scopus 로고
    • GCG. Program Manual. Madison, WI: Genetic Computer Group
    • GCG (1995). Wisconsin Package Version 8. 1 Program Manual. Madison, WI: Genetic Computer Group.
    • (1995) Wisconsin Package Version 8.1
  • 13
    • 79955023099 scopus 로고    scopus 로고
    • Supercritical carbon dioxide micronization of zeaxanthin from moderately thermophilic bacteria Muricauda lutaonensisCC-HSB-11 T
    • Hameed, A., Arun, A. B., Ho, H.-P., Chang, C.-M., Rekha, P. D., Lee, M.-R., Singh, S. & Young, C.-C. (2011). Supercritical carbon dioxide micronization of zeaxanthin from moderately thermophilic bacteria Muricauda lutaonensisCC-HSB-11 T. J Agric Food Chem 59, 4119-4124.
    • (2011) J Agric Food Chem , vol.59 , pp. 4119-4124
    • Hameed, A.1    Arun, A.B.2    Ho, H.-P.3    Chang, C.-M.4    Rekha, P.D.5    Lee, M.-R.6    Singh, S.7    Young, C.-C.8
  • 14
    • 84863829417 scopus 로고    scopus 로고
    • Siansivirga zeaxanthinifaciensgen. nov., sp. nov., a novel zeaxanthin-producing member of the familyFlavobacteriaceaeisolated from coastal seawater of Taiwan
    • Hameed, A., Shahina, M., Lin, S.-Y., Sridhar, K. R., Young, L.-S., Lee, M.-R., Chen, W.-M., Chou, J.-H. & Young, C.-C. (2012). Siansivirga zeaxanthinifaciensgen. nov., sp. nov., a novel zeaxanthin-producing member of the familyFlavobacteriaceaeisolated from coastal seawater of Taiwan. FEMS Microbiol Lett 333, 37-45.
    • (2012) FEMS Microbiol Lett , vol.333 , pp. 37-45
    • Hameed, A.1    Shahina, M.2    Lin, S.-Y.3    Sridhar, K.R.4    Young, L.-S.5    Lee, M.-R.6    Chen, W.-M.7    Chou, J.-H.8    Young, C.-C.9
  • 15
    • 84889570529 scopus 로고    scopus 로고
    • Kordia aquimarissp. nov., a zeaxanthin-producing member of the familyFlavobacteriaceae isolated from surface seawater, and emended description of the genus Kordia
    • Hameed, A., Shahina, M., Lin, S.-Y., Cho, J. C., Lai, W.-A. & Young, C.-C. (2013). Kordia aquimarissp. nov., a zeaxanthin-producing member of the familyFlavobacteriaceae isolated from surface seawater, and emended description of the genus Kordia. Int J Syst Evol Microbiol 63, 4790-4796.
    • (2013) Int J Syst Evol Microbiol , vol.63 , pp. 4790-4796
    • Hameed, A.1    Shahina, M.2    Lin, S.-Y.3    Cho, J.C.4    Lai, W.-A.5    Young, C.-C.6
  • 16
    • 84891896253 scopus 로고    scopus 로고
    • Aquibacter zeaxanthinifaciensgen. nov., sp. nov., a zeaxanthin-producing bacterium of the family Flavobacteriaceae isolated from surface seawater, and emended descriptions of the generaAestuariibaculumandGaetbulibacter
    • Hameed, A., Shahina, M., Lin, S.-Y., Lai, W.-A., Hsu, Y.-H., Liu, Y.-C. & Young, C.-C. (2014). Aquibacter zeaxanthinifaciensgen. nov., sp. nov., a zeaxanthin-producing bacterium of the family Flavobacteriaceae isolated from surface seawater, and emended descriptions of the generaAestuariibaculumandGaetbulibacter. Int J Syst Evol Microbiol 64, 138-145.
    • (2014) Int J Syst Evol Microbiol , vol.64 , pp. 138-145
    • Hameed, A.1    Shahina, M.2    Lin, S.-Y.3    Lai, W.-A.4    Hsu, Y.-H.5    Liu, Y.-C.6    Young, C.-C.7
  • 17
    • 0031832694 scopus 로고    scopus 로고
    • Sequencing multimegabase-template DNA with BigDye terminator chemistry
    • Heiner, C. R., Hunkapiller, K. L., Chen, S. M., Glass, J. I. & Chen, E. Y. (1998). Sequencing multimegabase-template DNA with BigDye terminator chemistry. Genome Res 8, 557-561.
    • (1998) Genome Res , vol.8 , pp. 557-561
    • Heiner, C.R.1    Hunkapiller, K.L.2    Chen, S.M.3    Glass, J.I.4    Chen, E.Y.5
  • 18
    • 84880995663 scopus 로고    scopus 로고
    • Gramella aestuariisp. nov., isolated from a tidal flat, and emended description ofGramella echinicola
    • Jeong, S. H., Jin, H. M. & Jeon, C. O. (2013). Gramella aestuariisp. nov., isolated from a tidal flat, and emended description ofGramella echinicola. Int J Syst Evol Microbiol 63, 2872-2878.
    • (2013) Int J Syst Evol Microbiol , vol.63 , pp. 2872-2878
    • Jeong, S.H.1    Jin, H.M.2    Jeon, C.O.3
  • 19
    • 84555206959 scopus 로고    scopus 로고
    • Gramella jeungdoensis sp. nov., isolated from a solar saltern in Korea
    • Joung, Y., Kim, H., Jang, T., Ahn, T. S. & Joh, K. (2011). Gramella jeungdoensis sp. nov., isolated from a solar saltern in Korea. J Microbiol 49, 1022-1026.
    • (2011) J Microbiol , vol.49 , pp. 1022-1026
    • Joung, Y.1    Kim, H.2    Jang, T.3    Ahn, T.S.4    Joh, K.5
  • 20
    • 0029799185 scopus 로고    scopus 로고
    • Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa
    • Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
    • (1996) Can J Microbiol , vol.42 , pp. 989-1005
    • Kämpfer, P.1    Kroppenstedt, R.M.2
  • 21
    • 84863230041 scopus 로고    scopus 로고
    • Introducing EzTaxone: A prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species
    • Kim, O.-S., Cho, Y.-J., Lee, K., Yoon, S.-H., Kim, M., Na, H., Park, S.-C., Jeon, Y. S., Lee, J.-H. & other authors (2012). Introducing EzTaxone: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
    • (2012) Int J Syst Evol Microbiol , vol.62 , pp. 716-721
    • Kim, O.-S.1    Cho, Y.-J.2    Lee, K.3    Yoon, S.-H.4    Kim, M.5    Na, H.6    Park, S.-C.7    Jeon, Y.S.8    Lee, J.-H.9
  • 22
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 23
    • 0036207009 scopus 로고    scopus 로고
    • The ecology ofCytophaga-Flavobacteriain aquatic environments
    • Kirchman, D. L. (2002). The ecology ofCytophaga-Flavobacteriain aquatic environments. FEMS Microbiol Ecol 39, 91-100.
    • (2002) FEMS Microbiol Ecol , vol.39 , pp. 91-100
    • Kirchman, D.L.1
  • 24
    • 27844598267 scopus 로고    scopus 로고
    • Gramella portivictoriaesp. nov., a novel member of the familyFlavobacteriaceae isolated from marine sediment
    • Lau, S. C., Tsoi, M. M., Li, X., Plakhotnikova, I., Dobretsov, S., Wong, P. K. & Qian, P. Y. (2005). Gramella portivictoriaesp. nov., a novel member of the familyFlavobacteriaceae isolated from marine sediment. Int J Syst Evol Microbiol 55, 2497-2500.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 2497-2500
    • Lau, S.C.1    Tsoi, M.M.2    Li, X.3    Plakhotnikova, I.4    Dobretsov, S.5    Wong, P.K.6    Qian, P.Y.7
  • 25
    • 84891900272 scopus 로고    scopus 로고
    • Gramella flavasp. nov., a member of the familyFlavobacteriaceaeisolated from seawater
    • Liu, K., Li, S., Jiao, N. & Tang, K. (2014). Gramella flavasp. nov., a member of the familyFlavobacteriaceaeisolated from seawater. Int J Syst Evol Microbiol 64, 165-168.
    • (2014) Int J Syst Evol Microbiol , vol.64 , pp. 165-168
    • Liu, K.1    Li, S.2    Jiao, N.3    Tang, K.4
  • 26
    • 0000198211 scopus 로고
    • Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography
    • Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
    • (1989) Int J Syst Bacteriol , vol.39 , pp. 159-167
    • Mesbah, M.1    Premachandran, U.2    Whitman, W.B.3
  • 28
    • 0002435103 scopus 로고
    • Determinative and cytological light microscopy
    • Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology
    • Murray, R. G. E., Doetsch, R. N. & Robinow, C. F. (1994). Determinative and cytological light microscopy. In Methods for General and Molecular Bacteriology, pp. 21-41. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
    • (1994) Methods for General and Molecular Bacteriology , pp. 21-41
    • Murray, R.G.E.1    Doetsch, R.N.2    Robinow, C.F.3
  • 29
    • 13244275250 scopus 로고    scopus 로고
    • Gramella echinicola gen. nov., sp. nov., a novel halophilic bacterium of the family Flavobacteriaceae isolated from the sea urchin Strongylocentrotus intermedius
    • Nedashkovskaya, O. I., Kim, S. B., Lysenko, A. M., Frolova, G. M., Mikhailov, V. V., Bae, K. S., Lee, D. H. & Kim, I. S. (2005). Gramella echinicola gen. nov., sp. nov., a novel halophilic bacterium of the family Flavobacteriaceae isolated from the sea urchin Strongylocentrotus intermedius. Int J Syst Evol Microbiol 55, 391-394.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 391-394
    • Nedashkovskaya, O.I.1    Kim, S.B.2    Lysenko, A.M.3    Frolova, G.M.4    Mikhailov, V.V.5    Bae, K.S.6    Lee, D.H.7    Kim, I.S.8
  • 30
    • 78650051415 scopus 로고    scopus 로고
    • Gramella marinasp. nov., isolated from the sea urchin Strongylocentrotus intermedius
    • Nedashkovskaya, O. I., Kim, S. B. & Bae, K. S. (2010). Gramella marinasp. nov., isolated from the sea urchin Strongylocentrotus intermedius. Int J Syst Evol Microbiol 60, 2799-2802.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 2799-2802
    • Nedashkovskaya, O.I.1    Kim, S.B.2    Bae, K.S.3
  • 31
    • 0000561885 scopus 로고
    • The orderCytophagales
    • 2nd edn, Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer
    • Reichenbach, H. (1992). The orderCytophagales. In The Prokaryotes, 2nd edn, vol. 4, pp. 3631-3675. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer.
    • (1992) The Prokaryotes , vol.4 , pp. 3631-3675
    • Reichenbach, H.1
  • 32
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 33
    • 0141810217 scopus 로고
    • Identification of bacteria by gas chromatography of cellular fatty acids
    • Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20, 16.
    • (1990) USFCC Newsl , vol.20 , pp. 16
    • Sasser, M.1
  • 34
    • 84883767599 scopus 로고    scopus 로고
    • Sphingomicrobium astaxanthinifaciens sp. nov., an astaxanthinproducing glycolipid-rich bacterium isolated from surface seawater and emended description of the genusSphingomicrobium
    • Shahina, M., Hameed, A., Lin, S.-Y., Hsu, Y.-H., Liu, Y.-C., Cheng, I.-C., Lee, M.-R., Lai, W.-A., Lee, R.-J. & Young, C.-C. (2013). Sphingomicrobium astaxanthinifaciens sp. nov., an astaxanthinproducing glycolipid-rich bacterium isolated from surface seawater and emended description of the genusSphingomicrobium. Int J Syst Evol Microbiol 63, 3415-3422.
    • (2013) Int J Syst Evol Microbiol , vol.63 , pp. 3415-3422
    • Shahina, M.1    Hameed, A.2    Lin, S.-Y.3    Hsu, Y.-H.4    Liu, Y.-C.5    Cheng, I.-C.6    Lee, M.-R.7    Lai, W.-A.8    Lee, R.-J.9    Young, C.-C.10
  • 35
    • 84896493038 scopus 로고    scopus 로고
    • Gramella planctonicasp. nov., a zeaxanthin-producing bacterium isolated from surface seawater, and emended descriptions of Gramella aestuarii and Gramella echinicola
    • Shahina, M., Hameed, A., Lin, S.-Y., Lee, R.-J., Lee, M.-R. & Young, C.-C. (2014). Gramella planctonicasp. nov., a zeaxanthin-producing bacterium isolated from surface seawater, and emended descriptions of Gramella aestuarii and Gramella echinicola. Antonie van Leeuwenhoek 105, 771-779.
    • (2014) Antonie van Leeuwenhoek , vol.105 , pp. 771-779
    • Shahina, M.1    Hameed, A.2    Lin, S.-Y.3    Lee, R.-J.4    Lee, M.-R.5    Young, C.-C.6
  • 36
    • 0000612080 scopus 로고
    • Phenotypic characterization
    • Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology
    • Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
    • (1994) Methods for General and Molecular Bacteriology , pp. 607-654
    • Smibert, R.M.1    Krieg, N.R.2
  • 37
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 38
    • 0031574072 scopus 로고    scopus 로고
    • TheCLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). TheCLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 40
    • 0035221043 scopus 로고    scopus 로고
    • Automated fluorescent DNA sequencing on the ABI PRISM 310 Genetic Analyzer
    • Watts, D. & MacBeath, J. R. (2001). Automated fluorescent DNA sequencing on the ABI PRISM 310 Genetic Analyzer. Methods Mol Biol 167, 153-170.
    • (2001) Methods Mol Biol , vol.167 , pp. 153-170
    • Watts, D.1    McBeath, J.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.