Tamlana sedimentorum sp. nov., isolated from shallow sand sediments of the Sea of Japan

International Journal of Systematic and Evolutionary Microbiology

Volumn 64, Issue PART 8, 2014, Pages 2891-2896

  Romanenko, Lyudmila A ^a   Tanaka, Naoto ^b   Kurilenko, Valeriya V ^a   Svetashev, Vassilii I ^c  

^a PACIFIC INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^b TOKYO UNIVERSITY OF AGRICULTURE   (Japan)

^c INSTITUTE OF MARINE BIOLOGY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID; GENOMIC DNA; MENAQUINONE; RNA 16S; SODIUM CHLORIDE;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; JAPAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SAND; SEA; SEASHORE; SEDIMENT; TAMLANA SEDIMENTORUM; TEMPERATURE; TYPE STRAIN;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; FLAVOBACTERIACEAE; GEOLOGIC SEDIMENTS; JAPAN; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; SILICON DIOXIDE; VITAMIN K 2;

EID: 84906057256     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.061812-0     Document Type: Article

References (22)

1. Bernardet, J.-F., Nakagawa, Y., Holmes, B. & Subcommittee on the taxonomy of FlavobacteriumandCytophaga-like Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes (2002). Proposed minimal standards for describing new taxa of the familyFlavobacteriaceaeand emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
2. Bowman, J. P. (2000). Description ofCellulophaga algicolasp. nov., isolated from the surface of Antarctic algae, and reclassification of Cytophaga uliginosa(ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosacomb. nov. Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50, 1861-1868.
3. Bruns, A., Rohde, M. & Berthe-Corti, L. (2001). Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment. Int J Syst Evol Microbiol 51, 1997-2006.
4. Fautz, E. & Reichenbach, H. (1980). A simple test for flexirubin-type pigments. FEMS Microbiol Lett 8, 87-91.
5. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
6. Jeong, S. H., Park, M. S., Jin, H. M., Lee, K., Park, W. & Jeon, C. O. (2013). Aestuariibaculum suncheonensegen. nov., sp. nov., a marine bacterium of the familyFlavobacteriaceaeisolated from a tidal flat and emended descriptions of the generaGaetbulibacterandTamlana. Int J Syst Evol Microbiol 63, 332-338.
7. Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & other authors (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
8. Lee, S. D. (2007). Tamlana crocinagen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae, isolated from beach sediment in Korea. Int J Syst Evol Microbiol 57, 764-769.
9. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
10. Owen, R. J., Hill, L. R. & Lapage, S. P. (1969). Determination of DNA base compositions from melting profiles in dilute buffers. Biopolymers 7, 503-516.
11. Pearson, W. R. & Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 85, 2444-2448.
12. Pruesse, E., Peplies, J. & Glöckner, F. O. (2012). SINA: accurate highthroughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 28, 1823-1829.
13. Romanenko, L. A., Uchino, M., Frolova, G. M. & Mikhailov, V. V. (2007). Marixanthomonas ophiuraegen. nov., sp. nov., a marine bacterium of the familyFlavobacteriaceaeisolated from a deep-sea brittle star. Int J Syst Evol Microbiol 57, 457-462.
14. Romanenko, L. A., Tanaka, N., Frolova, G. M. & Mikhailov, V. V. (2009). Winogradskyella arenosisp. nov., a member of the family Flavobacteriaceaeisolated from marine sediments from the Sea of Japan. Int J Syst Evol Microbiol 59, 1443-1446.
15. Romanenko, L. A., Tanaka, N., Frolova, G. M. & Mikhailov, V. V. (2010). Arenicella xanthagen. nov., sp. nov., a gammaproteobacterium isolated from a marine sandy sediment. Int J Syst Evol Microbiol 60, 1832-1836.
16. Sasser, M. (1990). Identificationof bacteriaby gas chromatographyof cellularfatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
17. Shida, O., Takagi, H., Kadowaki, K., Nakamura, L. K. & Komagata, K. (1997). Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genusPaenibacillus. Int J Syst Bacteriol 47, 289-298.
18. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-655. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
19. Stackebrandt, E. & Ebers, J. (2006). Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33, 152-155.
20. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
21. Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. (2013). MEGA6: molecular evolutionary genetics analysis version 6. 0. Mol Biol Evol 30, 2725-2729.
22. Yoon, J. H., Kang, S. J., Lee, M. H. & Oh, T. K. (2008). Tamlana agarivoranssp. nov., isolated from seawater off Jeju Island in Korea. Int J Syst Evol Microbiol 58, 1892-1895.