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Volumn , Issue SUPP.33, 2011, Pages 1-18

Next generation sequence assembly with AMOS

Author keywords

Genome assembly; Next generation sequencing; Open source

Indexed keywords

ARTICLE; BACTERIAL GENOME; COMPUTER PROGRAM; DATA ANALYSIS; GENE SEQUENCE; GENOME; METAGENOMICS; PRIORITY JOURNAL; QUALITY CONTROL; VIRUS GENOME;

EID: 80051972336     PISSN: 19343396     EISSN: 1934340X     Source Type: Journal    
DOI: 10.1002/0471250953.bi1108s33     Document Type: Article
Times cited : (172)

References (26)
  • 5
    • 0029312687 scopus 로고
    • A new algorithm for DNA sequence assembly
    • Idury, R.M. and Waterman, M.S. 1995. A new algorithm for DNA sequence assembly. J. Comput. Biol. 2:291-306.
    • (1995) J. Comput. Biol. , vol.2 , pp. 291-306
    • Idury, R.M.1    Waterman, M.S.2
  • 6
    • 78649358717 scopus 로고    scopus 로고
    • Quake: quality-aware detection and correction of sequencing errors
    • Kelley, D.R., Schatz, M.C., and Salzberg, S.L. 2010. Quake: quality-aware detection and correction of sequencing errors. Genome Biol. 11:R116.
    • (2010) Genome Biol , vol.11
    • Kelley, D.R.1    Schatz, M.C.2    Salzberg, S.L.3
  • 8
    • 85027932848 scopus 로고    scopus 로고
    • State of the art de novo assembly of human genomes from massively parallel sequencing data
    • Li, Y., Hu, Y., Bolund, L., andWang, J. 2010. State of the art de novo assembly of human genomes from massively parallel sequencing data. Hum. Genomics 4:271-277.
    • (2010) Hum. Genomics , vol.4 , pp. 271-277
    • Li, Y.1    Hu, Y.2    Bolund, L.3    Wang, J.4
  • 10
    • 77952886150 scopus 로고    scopus 로고
    • Assembly algorithms for next-generation sequencing data
    • Miller, J.R.,Koren, S., and Sutton, G. 2010. Assembly algorithms for next-generation sequencing data. Genomics 95:315-327.
    • (2010) Genomics , vol.95 , pp. 315-327
    • Miller, J.R.1    Koren, S.2    Sutton, G.3
  • 11
    • 0034708758 scopus 로고    scopus 로고
    • A Whole-genome assembly of drosophila
    • Myers, E.W. 2000. A Whole-genome assembly of drosophila. Science 287:2196-2204.
    • (2000) Science , vol.287 , pp. 2196-2204
    • Myers, E.W.1
  • 12
    • 27544497879 scopus 로고    scopus 로고
    • The fragment assembly string graph
    • Myers, E.W. 2005. The fragment assembly string graph. Bioinformatics 21:ii79-ii85.
    • (2005) Bioinformatics , vol.21
    • Myers, E.W.1
  • 13
    • 79952108717 scopus 로고    scopus 로고
    • Sequencing and genome assembly using next-generation technologies
    • Nagarajan, N. and Pop, M. 2010. Sequencing and genome assembly using next-generation technologies. Methods Mol. Biol. 673:1-17.
    • (2010) Methods Mol. Biol. , vol.673 , pp. 1-17
    • Nagarajan, N.1    Pop, M.2
  • 15
    • 45549109750 scopus 로고    scopus 로고
    • Genome assembly forensics: Finding the elusive mis-assembly
    • Phillippy, A.M., Schatz, M.C, and Pop, M. 2008. Genome assembly forensics: Finding the elusive mis-assembly. Genome Biol. 9:R55.
    • (2008) Genome Biol , vol.9
    • Phillippy, A.M.1    Schatz, M.C.2    Pop, M.3
  • 16
    • 39649084637 scopus 로고    scopus 로고
    • Bioinformatics challenges of new sequencing technology
    • Pop, M. and Salzberg, S.L. 2008. Bioinformatics challenges of new sequencing technology. Trends Genet. 24:142-149.
    • (2008) Trends Genet , vol.24 , pp. 142-149
    • Pop, M.1    Salzberg, S.L.2
  • 17
    • 0346505466 scopus 로고    scopus 로고
    • Hierarchical scaffolding with Bambus
    • Pop, M., Kosack, D.S., and Salzberg, S.L. 2004. Hierarchical scaffolding with Bambus. Genome Res. 14:149-159.
    • (2004) Genome Res , vol.14 , pp. 149-159
    • Pop, M.1    Kosack, D.S.2    Salzberg, S.L.3
  • 18
    • 77952857079 scopus 로고    scopus 로고
    • Correction of sequencing errors in a mixed set of reads
    • Salmela, L. 2010. Correction of sequencing errors in a mixed set of reads. Bioinformatics 26:1284-1290.
    • (2010) Bioinformatics , vol.26 , pp. 1284-1290
    • Salmela, L.1
  • 19
    • 0016800090 scopus 로고
    • A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase
    • Sanger, F. and Coulson, A. 1975. A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase. J. Mol. Biol. 94:441-448.
    • (1975) J. Mol. Biol. , vol.94 , pp. 441-448
    • Sanger, F.1    Coulson, A.2
  • 21
    • 77956279237 scopus 로고    scopus 로고
    • Assembly of large genomes using secondgeneration sequencing
    • Schatz, M.C., Delcher, A.L., and Salzberg, S.L. 2010. Assembly of large genomes using secondgeneration sequencing. Genome Res. 20:1165-1173.
    • (2010) Genome Res , vol.20 , pp. 1165-1173
    • Schatz, M.C.1    Delcher, A.L.2    Salzberg, S.L.3
  • 24
    • 77957758142 scopus 로고    scopus 로고
    • Reptile: Representative tiling for short read error correction
    • Yang, X., Dorman, K.S., and Aluru, S. 2010. Reptile: Representative tiling for short read error correction. Bioinformatics 26:2526-2533.
    • (2010) Bioinformatics , vol.26 , pp. 2526-2533
    • Yang, X.1    Dorman, K.S.2    Aluru, S.3
  • 25
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino, D.R. and Birney, E. 2008. Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 26
    • 78349249371 scopus 로고    scopus 로고
    • EDAR: an efficient error detection and removal algorithm for next generation sequencing data
    • Zhao, X., Palmer, L.E., Bolanos, R., Mircean, C., Fasulo, D., and Wittenberg, G.M. 2010. EDAR: an efficient error detection and removal algorithm for next generation sequencing data. J. Comput. Biol. 17:1549-1560.
    • (2010) J. Comput. Biol. , vol.17 , pp. 1549-1560
    • Zhao, X.1    Palmer, L.E.2    Bolanos, R.3    Mircean, C.4    Fasulo, D.5    Wittenberg, G.M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.