Clinical PathoScope: Rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data

BMC Bioinformatics

Volumn 15, Issue 1, 2014, Pages

  Byrd, Allyson L ^a,b   Perez Rogers, Joseph F ^a,c   Manimaran, Solaiappan ^c   Castro Nallar, Eduardo ^d   Toma, Ian ^d   McCaffrey, Tim ^d   Siegel, Marc ^d   Benson, Gary ^a,e   Crandall, Keith A ^d   Johnson, William E ^a,c  

^a BOSTON UNIVERSITY   (United States)

^b NATIONAL HUMAN GENOME RESEARCH INSTITUTE   (United States)

^c BOSTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d GEORGE WASHINGTON UNIVERSITY   (United States)

^e Boston University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CLINICAL SAMPLES; PATHOGEN IDENTIFICATION;

ARTICLE; BIOLOGY; HOST PATHOGEN INTERACTION; HUMAN; METHODOLOGY; MICROBIOLOGICAL EXAMINATION; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; TIME;

BASE SEQUENCE; COMPUTATIONAL BIOLOGY; HOST-PATHOGEN INTERACTIONS; HUMANS; MICROBIOLOGICAL TECHNIQUES; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SPECIES SPECIFICITY; TIME FACTORS;

EID: 84905723235     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-15-262     Document Type: Article

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