IMSA: Integrated Metagenomic Sequence Analysis for Identification of Exogenous Reads in a Host Genomic Background

PLoS ONE

Volumn 8, Issue 5, 2013, Pages

  Dimon, Michelle T ^a   Wood, Henry M ^b   Rabbitts, Pamela H ^b   Arron, Sarah T ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b ST JAMES S UNIVERSITY HOSPITAL   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; RNA;

ARTICLE; CASKI CELL LINE; CONTROLLED STUDY; GENETIC ALGORITHM; HELA CELL; HIGH THROUGHPUT SEQUENCING; HOST; HUMAN; HUMAN PAPILLOMAVIRUS TYPE 16; HUMAN PAPILLOMAVIRUS TYPE 18; INTEGRATED METAGENOMIC SEQUENCE ANALYSIS; METAGENOMICS; NONHUMAN; RNA SEQUENCE; SCORING SYSTEM; SEQUENCE ALIGNMENT; SKIN CARCINOMA; TAXON; TUMOR CELLS AND CELL LINES; UTERINE CERVIX CANCER;

ALGORITHMS; CARCINOMA, SQUAMOUS CELL; FEMALE; GENES, BACTERIAL; GENES, VIRAL; GENOME, HUMAN; HELA CELLS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMAN PAPILLOMAVIRUS 16; HUMAN PAPILLOMAVIRUS 18; HUMANS; METAGENOME; MICROBIOTA; MOLECULAR SEQUENCE ANNOTATION; PAPILLOMAVIRUS INFECTIONS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; UTERINE CERVICAL NEOPLASMS;

EID: 84878147737     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0064546     Document Type: Article

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