-
1
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
DOI 10.1038/nature05874, PII NATURE05874
-
Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, et al. (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447: 799-816. (Pubitemid 46920138)
-
(2007)
Nature
, vol.447
, Issue.7146
, pp. 799-816
-
-
Birney, E.1
Stamatoyannopoulos, J.A.2
Dutta, A.3
Guigo, R.4
Gingeras, T.R.5
Margulies, E.H.6
Weng, Z.7
Snyder, M.8
Dermitzakis, E.T.9
Thurman, R.E.10
Kuehn, M.S.11
Taylor, C.M.12
Neph, S.13
Koch, C.M.14
Asthana, S.15
Malhotra, A.16
Adzhubei, I.17
Greenbaum, J.A.18
Andrews, R.M.19
Flicek, P.20
Boyle, P.J.21
Cao, H.22
Carter, N.P.23
Clelland, G.K.24
Davis, S.25
Day, N.26
Dhami, P.27
Dillon, S.C.28
Dorschner, M.O.29
Fiegler, H.30
Giresi, P.G.31
Goldy, J.32
Hawrylycz, M.33
Haydock, A.34
Humbert, R.35
James, K.D.36
Johnson, B.E.37
Johnson, E.M.38
Frum, T.T.39
Rosenzweig, E.R.40
Karnani, N.41
Lee, K.42
Lefebvre, G.C.43
Navas, P.A.44
Neri, F.45
Parker, S.C.J.46
Sabo, P.J.47
Sandstrom, R.48
Shafer, A.49
Vetrie, D.50
Weaver, M.51
Wilcox, S.52
Yu, M.53
Collins, F.S.54
Dekker, J.55
Lieb, J.D.56
Tullius, T.D.57
Crawford, G.E.58
Sunyaev, S.59
Noble, W.S.60
Dunham, I.61
Denoeud, F.62
Reymond, A.63
Kapranov, P.64
Rozowsky, J.65
Zheng, D.66
Castelo, R.67
Frankish, A.68
Harrow, J.69
Ghosh, S.70
Sandelin, A.71
Hofacker, I.L.72
Baertsch, R.73
Keefe, D.74
Dike, S.75
Cheng, J.76
Hirsch, H.A.77
Sekinger, E.A.78
Lagarde, J.79
Abril, J.F.80
Shahab, A.81
Flamm, C.82
Fried, C.83
Hackermuller, J.84
Hertel, J.85
Lindemeyer, M.86
Missal, K.87
Tanzer, A.88
Washietl, S.89
Korbel, J.90
Emanuelsson, O.91
Pedersen, J.S.92
Holroyd, N.93
Taylor, R.94
Swarbreck, D.95
Matthews, N.96
Dickson, M.C.97
Thomas, D.J.98
Weirauch, M.T.99
more..
-
2
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
-
Khalil AM, Guttman M, Huarte M, Garber M, Raj A, et al. (2009) Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proceedings of the National Academy of Sciences 106: 11667-11672.
-
(2009)
Proceedings of the National Academy of Sciences
, vol.106
, pp. 11667-11672
-
-
Khalil, A.M.1
Guttman, M.2
Huarte, M.3
Garber, M.4
Raj, A.5
-
3
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
Gupta RA, Shah N, Wang KC, Kim J, Horlings HM, et al. (2010) Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 464: 1071-1076.
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
Shah, N.2
Wang, K.C.3
Kim, J.4
Horlings, H.M.5
-
4
-
-
0030026001
-
Requirement for Xist in X chromosome inactivation
-
DOI 10.1038/379131a0
-
Penny GD, Kay GF, Sheardown SA, Rastan S, Brockdorff N (1996) Requirement for Xist in X chromosome inactivation. Nature 379: 131-137. (Pubitemid 26020194)
-
(1996)
Nature
, vol.379
, Issue.6561
, pp. 131-137
-
-
Penny, G.D.1
Kay, G.F.2
Sheardown, S.A.3
Rastan, S.4
Brockdorff, N.5
-
5
-
-
84865379361
-
LincRNA-p21 suppresses target mRNA translation
-
Yoon JH, Abdelmohsen K, Srikantan S, Yang X, Martindale JL, et al. (2012) LincRNA-p21 suppresses target mRNA translation. Molecular cell.
-
(2012)
Molecular Cell
-
-
Yoon, J.H.1
Abdelmohsen, K.2
Srikantan, S.3
Yang, X.4
Martindale, J.L.5
-
6
-
-
0344429906
-
MALAT-1, a novel noncoding RNA, and thymosin β4 predict metastasis and survival in early-stage non-small cell lung cancer
-
DOI 10.1038/sj.onc.1206928
-
Ji P, Diederichs S, Wang W, Böing S, Metzger R, et al. (2003) MALAT-1, a novel noncoding RNA, and thymosin β4 predict metastasis and survival in early-stage non-small cell lung cancer. Oncogene 22: 8031-8041. (Pubitemid 37175867)
-
(2003)
Oncogene
, vol.22
, Issue.39
, pp. 8031-8041
-
-
Ji, P.1
Diederichs, S.2
Wang, W.3
Boing, S.4
Metzger, R.5
Schneider, P.M.6
Tidow, N.7
Brandt, B.8
Buerger, H.9
Bulk, E.10
Thomas, M.11
Berdel, W.E.12
Serve, H.13
Muller-Tidow, C.14
-
7
-
-
84905499788
-
Association between long non-coding RNA and human rare diseases
-
Review
-
He JH, Han ZP, Li YG (2014) Association between long non-coding RNA and human rare diseases (Review). Biomedical Reports 2: 19-23.
-
(2014)
Biomedical Reports
, vol.2
, pp. 19-23
-
-
He, J.H.1
Han, Z.P.2
Li, Y.G.3
-
8
-
-
78651397147
-
Large non-coding RNAs: Missing links in cancer?
-
Huarte M, Rinn JL (2010) Large non-coding RNAs: missing links in cancer? Human molecular genetics 19: R152-R161.
-
(2010)
Human Molecular Genetics
, vol.19
-
-
Huarte, M.1
Rinn, J.L.2
-
10
-
-
33750370444
-
MicroRNA signatures in human cancers
-
DOI 10.1038/nrc1997, PII NRC1997
-
Calin GA, Croce CM (2006) MicroRNA signatures in human cancers. Nature Reviews Cancer 6: 857-866. (Pubitemid 44629897)
-
(2006)
Nature Reviews Cancer
, vol.6
, Issue.11
, pp. 857-866
-
-
Calin, G.A.1
Croce, C.M.2
-
13
-
-
72849144434
-
Sequencing technologies - The next generation
-
Metzker ML (2009) Sequencing technologies - the next generation. Nature Reviews Genetics 11: 31-46.
-
(2009)
Nature Reviews Genetics
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
15
-
-
77952760808
-
Sequence and structure analysis of noncoding RNAs
-
Springer
-
Washietl S (2010) Sequence and structure analysis of noncoding RNAs. Data Mining Techniques for the Life Sciences: Springer. pp. 285-306.
-
(2010)
Data Mining Techniques for the Life Sciences
, pp. 285-306
-
-
Washietl, S.1
-
17
-
-
84055185205
-
Predicting RNA-protein interactions using only sequence information
-
Muppirala UK, Honavar VG, Dobbs D (2011) Predicting RNA-protein interactions using only sequence information. BMC bioinformatics 12: 489.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 489
-
-
Muppirala, U.K.1
Honavar, V.G.2
Dobbs, D.3
-
18
-
-
52949096084
-
Next-generation DNA sequencing methods
-
Mardis ER (2008) Next-generation DNA sequencing methods. Annu Rev Genomics Hum Genet 9: 387-402.
-
(2008)
Annu Rev Genomics Hum Genet
, vol.9
, pp. 387-402
-
-
Mardis, E.R.1
-
19
-
-
0033836029
-
Control selection for RNA quantitation
-
Suzuki T, Higgins P, Crawford D (2000) Control selection for RNA quantitation. Biotechniques 29: 332-337. (Pubitemid 30658285)
-
(2000)
BioTechniques
, vol.29
, Issue.2
, pp. 332-337
-
-
Suzuki, T.1
Higgins, P.J.2
Crawford, D.R.3
-
20
-
-
0037288332
-
Expression of aphidicolin-induced fragile sites and their relationship between genetic susceptibility in breast cancer, ovarian cancer, and non-small-cell lung cancer patients
-
Dhillon VS, Husain SA, Ray G (2003) Expression of aphidicolin-induced fragile sites and their relationship between genetic susceptibility in breast cancer, ovarian cancer, and non-small-cell lung cancer patients. Teratogenesis, carcinogenesis, and mutagenesis 23: 35-45. (Pubitemid 36277883)
-
(2003)
Teratogenesis Carcinogenesis and Mutagenesis
, Issue.SUPPL. 1
, pp. 35-45
-
-
Dhillon, V.S.1
Husain, S.A.2
Ray, G.N.3
-
21
-
-
0033918825
-
Patterns of chromosomal imbalances in invasive breast cancer
-
DOI 10.1002/1097-0215(20000520)89:3<305::AID-IJC15
-
Richard F, Pacyna-Gengelbach M, Schlüns K, Fleige B, Winzer KJ, et al. (2000) Patterns of chromosomal imbalances in invasive breast cancer. International journal of cancer 89: 305-310. (Pubitemid 30430749)
-
(2000)
International Journal of Cancer
, vol.89
, Issue.3
, pp. 305-310
-
-
Richard, F.1
Pacyna-Gengelbach, M.2
Schluns, K.3
Fleige, B.4
Winzer, K.J.5
Szymas, J.6
Dietel, M.7
Petersen, I.8
Schwendel, A.9
-
22
-
-
0034144433
-
Two genes are responsible for Griscelli syndrome at the same 15q21 locus
-
DOI 10.1006/geno.1999.6081
-
Pastural E, Ersoy F, Yalman N, Wulffraat N, Grillo E, et al. (2000) Two genes are responsible for Griscelli syndrome at the same 15q21 locus. Genomics 63: 299-306. (Pubitemid 30146662)
-
(2000)
Genomics
, vol.63
, Issue.3
, pp. 299-306
-
-
Pastural, E.1
Ersoy, F.2
Yalman, N.3
Wulffraat, N.4
Grillo, E.5
Ozkinay, F.6
Tezcan, I.7
Gedikoglu, G.8
Philippe, N.9
Fischer, A.10
De Saint, B.G.11
-
23
-
-
75749138023
-
Common variants at 2q37. 3, 8q24. 21, 15q21. 3 and 16q24. 1 influence chronic lymphocytic leukemia risk
-
Crowther-Swanepoel D, Broderick P, Di Bernardo MC, Dobbins SE, Torres M, et al. (2010) Common variants at 2q37. 3, 8q24. 21, 15q21. 3 and 16q24. 1 influence chronic lymphocytic leukemia risk. Nature genetics 42: 132-136.
-
(2010)
Nature Genetics
, vol.42
, pp. 132-136
-
-
Crowther-Swanepoel, D.1
Broderick, P.2
Di Bernardo, M.C.3
Dobbins, S.E.4
Torres, M.5
-
24
-
-
33644998501
-
Genetic linkage of human height is confirmed to 9q22 and Xq24
-
Liu YZ, Xiao P, Guo YF, Xiong DH, Zhao LJ, et al. (2006) Genetic linkage of human height is confirmed to 9q22 and Xq24. Human genetics 119: 295-304.
-
(2006)
Human Genetics
, vol.119
, pp. 295-304
-
-
Liu, Y.Z.1
Xiao, P.2
Guo, Y.F.3
Xiong, D.H.4
Zhao, L.J.5
-
25
-
-
0033694150
-
Genome-wide scan of obesity in Finnish sibpairs reveals linkage to chromosome Xq24
-
Öhman M, Oksanen L, Kaprio J, Koskenvuo M, Mustajoki P, et al. (2000) Genome-wide scan of obesity in Finnish sibpairs reveals linkage to chromosome Xq24. Journal of Clinical Endocrinology & Metabolism 85: 3183-3190.
-
(2000)
Journal of Clinical Endocrinology & Metabolism
, vol.85
, pp. 3183-3190
-
-
Öhman, M.1
Oksanen, L.2
Kaprio, J.3
Koskenvuo, M.4
Mustajoki, P.5
-
26
-
-
77954614896
-
Comprehensive characterization of the DNA amplification at 13q34 in human breast cancer reveals TFDP1 and CUL4A as likely candidate target genes
-
Melchor L, Saucedo-Cuevas LP, Muñoz-Repeto I, Rodríguez- Pinilla SM, Honrado E, et al. (2009) Comprehensive characterization of the DNA amplification at 13q34 in human breast cancer reveals TFDP1 and CUL4A as likely candidate target genes. Breast Cancer Res 11: R86.
-
(2009)
Breast Cancer Res
, vol.11
-
-
Melchor, L.1
Saucedo-Cuevas, L.P.2
Muñoz-Repeto, I.3
Rodríguez- Pinilla, S.M.4
Honrado, E.5
-
27
-
-
0033008771
-
Comparative genomic hybridization of squamous cell carcinoma of the esophagus: The possible involvement of the DPI gene in the 13q34 amplicon
-
DOI 10.1002/(SICI)1098-2264(199904)24:4<337::AID-G
-
Shinomiya T, Mori T, Ariyama Y, Sakabe T, Fukuda Y, et al. (1999) Comparative genomic hybridization of squamous cell carcinoma of the esophagus: the possible involvement of the DP1 gene in the 13q34 amplicon. Genes, Chromosomes and Cancer 24: 337-344. (Pubitemid 29115872)
-
(1999)
Genes Chromosomes and Cancer
, vol.24
, Issue.4
, pp. 337-344
-
-
Shinomiya, T.1
Mori, T.2
Ariyama, Y.3
Sakabe, T.4
Fukuda, Y.5
Murakami, Y.6
Nakamura, Y.7
Inazawa, J.8
-
28
-
-
0034057732
-
Adrenocortical carcinoma is characterized by a high frequency of chromosomal gains and high-level amplifications
-
Dohna M, Reincke M, Mincheva A, Allolio B, Solinas-Toldo S, et al. (2000) Adrenocortical carcinoma is characterized by a high frequency of chromosomal gains and high-level amplifications. Genes, Chromosomes and Cancer 28: 145-152. (Pubitemid 30246992)
-
(2000)
Genes Chromosomes and Cancer
, vol.28
, Issue.2
, pp. 145-152
-
-
Dohna, M.1
Reincke, M.2
Mincheva, A.3
Allolio, B.4
Solinas-Toldo, S.5
Lichter, P.6
-
29
-
-
0036219134
-
Genetic alterations in childhood medulloblastoma analyzed by comparative genomic hybridization
-
DOI 10.1097/00043426-200203000-00009
-
Michiels EM, Weiss MM, Hoovers JM, Baak JP, Voute P, et al. (2002) Genetic alterations in childhood medulloblastoma analyzed by comparative genomic hybridization. Journal of pediatric hematology/oncology 24: 205-210. (Pubitemid 34297564)
-
(2002)
Journal of Pediatric Hematology/Oncology
, vol.24
, Issue.3
, pp. 205-210
-
-
Michiels, E.M.C.1
Weiss, M.M.2
Hoovers, J.M.N.3
Baak, J.P.A.4
Voute, P.A.5
Baas, F.6
Hermsen, M.A.J.A.7
-
30
-
-
0036614698
-
TFDP1, CUL4A, and CDC16 identified as targets for amplification at 13q34 in hepatocellular carcinomas
-
DOI 10.1053/jhep.2002.33683
-
Yasui K, Arii S, Zhao C, Imoto I, Ueda M, et al. (2002) TFDP1, CUL4A, and CDC16 identified as targets for amplification at 13q34 in hepatocellular carcinomas. Hepatology 35: 1476-1484. (Pubitemid 34966902)
-
(2002)
Hepatology
, vol.35
, Issue.6
, pp. 1476-1484
-
-
Yasui, K.1
Arii, S.2
Zhao, C.3
Imoto, I.4
Ueda, M.5
Nagai, H.6
Emi, M.7
Inazawa, J.8
-
31
-
-
77954572735
-
Long noncoding RNA as modular scaffold of histone modification complexes
-
Tsai MC, Manor O, Wan Y, Mosammaparast N, Wang JK, et al. (2010) Long noncoding RNA as modular scaffold of histone modification complexes. Science 329: 689-693.
-
(2010)
Science
, vol.329
, pp. 689-693
-
-
Tsai, M.C.1
Manor, O.2
Wan, Y.3
Mosammaparast, N.4
Wang, J.K.5
-
33
-
-
0028113345
-
A strong candidate for the breast and ovarian cancer susceptibility gene BRCA1
-
Miki Y, Swensen J, Shattuck-Eidens D, Futreal PA, Harshman K, et al. (1994) A strong candidate for the breast and ovarian cancer susceptibility gene BRCA1. Science 266: 66-71. (Pubitemid 24345325)
-
(1994)
Science
, vol.266
, Issue.5182
, pp. 66-71
-
-
Miki, Y.1
Swensen, J.2
Shattuck-Eidens, D.3
Futreal, P.A.4
Harshman, K.5
Tavtigian, S.6
Liu, Q.7
Cochran, C.8
Bennett, L.M.9
Ding, W.10
Bell, R.11
Rosenthal, J.12
Hussey, C.13
Tran, T.14
McClure, M.15
Frye, C.16
Hattier, T.17
Phelps, R.18
Haugen-Strano, A.19
Katcher, H.20
Yakumo, K.21
Gholami, Z.22
Shaffer, D.23
Stone, S.24
Bayer, S.25
Wray, C.26
Bogden, R.27
Dayananth, P.28
Ward, J.29
Tonin, P.30
Narod, S.31
Bristow, P.K.32
Norris, F.H.33
Helvering, L.34
Morrison, P.35
Rosteck, P.36
Lai, M.37
Barrett, J.C.38
Lewis, C.39
Neuhausen, S.40
Cannon-Albright, L.41
Goldgar, D.42
Wiseman, R.43
Kamb, A.44
Skolnick, M.H.45
more..
-
34
-
-
0028006563
-
Localization of a breast cancer susceptibility gene, BRCA2, to chromosome 13q12-13
-
Wooster R, Neuhausen SL, Mangion J, Quirk Y, Ford D, et al. (1994) Localization of a breast cancer susceptibility gene, BRCA2, to chromosome 13q12-13. Science 265: 2088-2090. (Pubitemid 24325690)
-
(1994)
Science
, vol.265
, Issue.5181
, pp. 2088-2090
-
-
Wooster, R.1
Neuhausen, S.L.2
Mangion, J.3
Quirk, Y.4
Ford, D.5
Collins, N.6
Nguyen, K.7
Seal, S.8
Tran, T.9
Averill, D.10
Fields, P.11
Marshall, G.12
Narod, S.13
Lenoir, G.M.14
Lynch, H.15
Feunteun, J.16
Devilee, P.17
Cornelisse, C.J.18
Menko, F.H.19
Daly, P.A.20
Ormiston, W.21
McManus, R.22
Pye, C.23
Lewis, C.M.24
Cannon-Albright, L.A.25
Peto, J.26
Ponder, B.A.J.27
Skolnick, M.H.28
Easton, D.F.29
Goldgar, D.E.30
Stratton, M.R.31
more..
-
35
-
-
0032423729
-
Steroid hormone receptors in breast cancer management
-
Osborne CK (1998) Steroid hormone receptors in breast cancer management. Breast cancer research and treatment 51: 227-238.
-
(1998)
Breast Cancer Research and Treatment
, vol.51
, pp. 227-238
-
-
Osborne, C.K.1
-
36
-
-
37049183697
-
Human breast cancer: Correlation of relapse and survival with amplification of the HER-2/neu oncogene
-
Slamon DJ, Clark GM, Wong SG, Levin WJ, Ullrich A, et al. (1987) Human breast cancer: correlation of relapse and survival with amplification of the HER-2/neu oncogene. Science 235: 177-182. (Pubitemid 17231334)
-
(1987)
Science
, vol.235
, Issue.4785
, pp. 177-182
-
-
Slamon, D.J.1
Clark, G.M.2
Wong, S.G.3
-
37
-
-
0024376173
-
Ras oncogenes in human cancer: A review
-
Bos JL (1989) Ras oncogenes in human cancer: a review. Cancer research 49: 4682-4689.
-
(1989)
Cancer Research
, vol.49
, pp. 4682-4689
-
-
Bos, J.L.1
-
38
-
-
0030936323
-
PTEN, a putative protein tyrosine phosphatase gene mutated in human brain, breast, and prostate cancer
-
DOI 10.1126/science.275.5308.1943
-
Li J, Yen C, Liaw D, Podsypanina K, Bose S, et al. (1997) PTEN, a putative protein tyrosine phosphatase gene mutated in human brain, breast, and prostate cancer. Science 275: 1943-1947. (Pubitemid 27148818)
-
(1997)
Science
, vol.275
, Issue.5308
, pp. 1943-1947
-
-
Li, J.1
Yen, C.2
Liaw, D.3
Podsypanina, K.4
Bose, S.5
Wang, S.I.6
Puc, J.7
Miliaresis, C.8
Rodgers, L.9
McCombie, R.10
Bigner, S.H.11
Giovanella, B.C.12
Ittmann, M.13
Tycko, B.14
Hibshoosh, H.15
Wigler, M.H.16
Parsons, R.17
-
39
-
-
33845524008
-
TNF-α in promotion and progression of cancer
-
Balkwill F (2006) TNF-α in promotion and progression of cancer. Cancer and Metastasis Reviews 25: 409-416.
-
(2006)
Cancer and Metastasis Reviews
, vol.25
, pp. 409-416
-
-
Balkwill, F.1
-
40
-
-
3542995667
-
Oncogenes and tumor suppressor genes in breast cancer: Potential diagnostic and therapeutic applications
-
DOI 10.1634/theoncologist.9-4-361
-
Osborne C, Wilson P, Tripathy D (2004) Oncogenes and tumor suppressor genes in breast cancer: potential diagnostic and therapeutic applications. The oncologist 9: 361-377. (Pubitemid 39014548)
-
(2004)
Oncologist
, vol.9
, Issue.4
, pp. 361-377
-
-
Osborne, C.1
Wilson, P.2
Tripathy, D.3
-
41
-
-
44949231424
-
T method
-
DOI 10.1038/nprot.2008.73, PII NPROT.2008.73
-
Schmittgen TD, Livak KJ (2008) Analyzing real-time PCR data by the comparative CT method. Nature protocols 3: 1101-1108. (Pubitemid 351818697)
-
(2008)
Nature Protocols
, vol.3
, Issue.6
, pp. 1101-1108
-
-
Schmittgen, T.D.1
Livak, K.J.2
-
42
-
-
77954818058
-
The American Joint Committee on Cancer: The 7th edition of the AJCC cancer staging manual and the future of TNM
-
Edge SB, Compton CC (2010) The American Joint Committee on Cancer: the 7th edition of the AJCC cancer staging manual and the future of TNM. Annals of surgical oncology 17: 1471-1474.
-
(2010)
Annals of Surgical Oncology
, vol.17
, pp. 1471-1474
-
-
Edge, S.B.1
Compton, C.C.2
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