An ARID Domain-Containing Protein within Nuclear Bodies Is Required for Sperm Cell Formation in Arabidopsis thaliana

PLoS Genetics

Volumn 10, Issue 7, 2014, Pages

  Zheng, Binglian ^a,b   He, Hui ^a   Zheng, Yanhua ^a   Wu, Wenye ^a   McCormick, Sheila ^b  

^a FUDAN UNIVERSITY   (China)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE DEACETYLASE 8; NUCLEAR PROTEIN; PROTEIN ARID1; UNCLASSIFIED DRUG; ARABIDOPSIS PROTEIN; ARID1 PROTEIN, ARABIDOPSIS; DUO1 PROTEIN, ARABIDOPSIS; HISTONE; HISTONE DEACETYLASE; TRANSCRIPTION FACTOR;

ARABIDOPSIS THALIANA; ARTICLE; CELL NUCLEUS; CELL NUCLEUS INCLUSION BODY; CONTROLLED STUDY; DUO1 GENE; GENE; GENE ACTIVATION; GENE EXPRESSION; HISTONE ACETYLATION; IN VITRO STUDY; IN VIVO STUDY; MUTANT; NONHUMAN; PLANT GAMETOGENESIS; POLLEN; PROTEIN LOCALIZATION; PROTEIN PROTEIN INTERACTION; WILD TYPE; ACETYLATION; ARABIDOPSIS; CELL CYCLE; CYTOLOGY; GENETICS; GERM CELL; GROWTH, DEVELOPMENT AND AGING; MEIOSIS; METABOLISM; MITOSIS; PROMOTER REGION; PROTEIN TERTIARY STRUCTURE;

ACETYLATION; ARABIDOPSIS; ARABIDOPSIS PROTEINS; CELL CYCLE; CELL NUCLEUS; GERM CELLS; HISTONE DEACETYLASES; HISTONES; MEIOSIS; MITOSIS; NUCLEAR PROTEINS; POLLEN; PROMOTER REGIONS, GENETIC; PROTEIN STRUCTURE, TERTIARY; TRANSCRIPTION FACTORS;

EID: 84905457338     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1004421     Document Type: Article

References (43)

1. McCormick S, (2004) Control of male gametophyte development. Plant Cell 16 (Suppl):: S142-153.
2. Okada T, Endo M, Singh MB, Bhalla PL, (2005) Analysis of the histone H3 gene family in Arabidopsis and identification of the male-gamete-specific variant AtMGH3. Plant J 44: 557-568.
3. Rotman N, Durbarry A, Wardle A, Yang WC, Chaboud A, et al. (2005) A novel class of MYB factors controls sperm-cell formation in plants. Curr Biol 15: 244-248.
4. Iwakawa H, Shinmyo A, Sekine M, (2006) Arabidopsis CDKA;1, a cdc2 homologue, controls proliferation of generative cells in male gametogenesis. Plant J 45: 819-831.
5. Mori T, Kuroiwa H, Higashiyama T, Kuroiwa T, (2006) GENERATIVE CELL SPECIFIC 1 is essential for angiosperm fertilization. Nat Cell Biol 8: 64-71.
6. Kim HJ, Oh SA, Brownfield L, Hong SH, Ryu H, et al. (2008) Control of plant germline proliferation by SCF(FBL17) degradation of cell cycle inhibitors. Nature 455: 1134-1137.
7. Brownfield L, Hafidh S, Durbarry A, Khatab H, Sidorova A, et al. (2009) Arabidopsis DUO POLLEN3 is a key regulator of male germline development and embryogenesis. Plant Cell 21: 1940-1956.
8. Zheng B, Chen X, McCormick S, (2011) The anaphase-promoting complex is a dual integrator that regulates both MicroRNA-mediated transcriptional regulation of cyclin B1 and degradation of Cyclin B1 during Arabidopsis male gametophyte development. Plant Cell 23: 1033-1046.
9. Brownfield L, Hafidh S, Borg M, Sidorova A, Mori T, et al. (2009) A plant germline-specific integrator of sperm specification and cell cycle progression. PLoS Genet 5: e1000430.
10. Engel ML, Holmes-Davis R, McCormick S, (2005) Green sperm. Identification of male gamete promoters in Arabidopsis. Plant Physiol 138: 2124-2133.
11. Borg M, Brownfield L, Khatab H, Sidorova A, Lingaya M, et al. (2011) The R2R3 MYB transcription factor DUO1 activates a male germline-specific regulon essential for sperm cell differentiation in Arabidopsis. Plant Cell 23: 534-549.
12. Palatnik JF, Wollmann H, Schommer C, Schwab R, Boisbouvier J, et al. (2007) Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319. Dev Cell 13: 115-125.
13. Wilsker D, Probst L, Wain HM, Maltais L, Tucker PW, et al. (2005) Nomenclature of the ARID family of DNA-binding proteins. Genomics 86: 242-251.
14. Okada Y, Scott G, Ray MK, Mishina Y, Zhang Y, (2007) Histone demethylase JHDM2A is critical for Tnp1 and Prm1 transcription and spermatogenesis. Nature 450: 119-123.
15. Wu RC, Jiang M, Beaudet AL, Wu MY, (2013) ARID4A and ARID4B regulate male fertility, a functional link to the AR and RB pathways. Proc Natl Acad Sci U S A 110: 4616-4621.
16. Lai A, Kennedy BK, Barbie DA, Bertos NR, Yang XJ, et al. (2001) RBP1 recruits the mSIN3-histone deacetylase complex to the pocket of retinoblastoma tumor suppressor family proteins found in limited discrete regions of the nucleus at growth arrest. Mol Cell Biol 21: 2918-2932.
17. Fleischer TC, Yun UJ, Ayer DE, (2003) Identification and characterization of three new components of the mSin3A corepressor complex. Mol Cell Biol 23: 3456-3467.
18. Takeuchi T, Watanabe Y, Takano-Shimizu T, Kondo S, (2006) Roles of jumonji and jumonji family genes in chromatin regulation and development. Dev Dyn 235: 2449-2459.
19. Takahashi M, Kojima M, Nakajima K, Suzuki-Migishima R, Takeuchi T, (2007) Functions of a jumonji-cyclin D1 pathway in the coordination of cell cycle exit and migration during neurogenesis in the mouse hindbrain. Dev Biol 303: 549-560.
20. Peng JC, Valouev A, Swigut T, Zhang J, Zhao Y, et al. (2009) Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells. Cell 139: 1290-1302.
21. Shen X, Kim W, Fujiwara Y, Simon MD, Liu Y, et al. (2009) Jumonji modulates polycomb activity and self-renewal versus differentiation of stem cells. Cell 139: 1303-1314.
22. Pasini D, Cloos PA, Walfridsson J, Olsson L, Bukowski JP, et al. (2010) JARID2 regulates binding of the Polycomb repressive complex 2 to target genes in ES cells. Nature 464: 306-310.
23. Li G, Margueron R, Ku M, Chambon P, Bernstein BE, et al. (2010) Jarid2 and PRC2, partners in regulating gene expression. Genes Dev 24: 368-380.
24. Zhu H, Chen T, Zhu M, Fang Q, Kang H, et al. (2008) A novel ARID DNA-binding protein interacts with SymRK and is expressed during early nodule development in Lotus japonicus. Plant Physiol 148: 337-347.
25. Honys D, Twell D, (2004) Transcriptome analysis of haploid male gametophyte development in Arabidopsis. Genome Biol 5: R85.
26. Borges F, Gomes G, Gardner R, Moreno N, McCormick S, et al. (2008) Comparative transcriptomics of Arabidopsis sperm cells. Plant Physiol 148: 1168-1181.
27. Ding Z, Gillespie LL, Paterno GD, (2003) Human MI-ER1 alpha and beta function as transcriptional repressors by recruitment of histone deacetylase 1 to their conserved ELM2 domain. Mol Cell Biol 23: 250-258.
28. Wang L, Charroux B, Kerridge S, Tsai CC, (2008) Atrophin recruits HDAC1/2 and G9a to modify histone H3K9 and to determine cell fates. EMBO Rep 9: 555-562.
29. Alandete-Saez M, Ron M, Leiboff S, McCormick S, (2011) Arabidopsis thaliana GEX1 has dual functions in gametophyte development and early embryogenesis. Plant J 68: 620-632.
30. Ron M, Alandete Saez M, Eshed Williams L, Fletcher JC, McCormick S, (2010) Proper regulation of a sperm-specific cis-nat-siRNA is essential for double fertilization in Arabidopsis. Genes Dev 24: 1010-1021.
31. Borg M, Twell D, (2010) Life after meiosis: patterning the angiosperm male gametophyte. Biochem Soc Trans 38: 577-582.
32. Haerizadeh F, Singh MB, Bhalla PL, (2006) Transcriptional repression distinguishes somatic from germ cell lineages in a plant. Science 313: 496-499.
33. Li H, Soriano M, Cordewener J, Muino JM, Riksen T, et al. (2014) The histone deacetylase inhibitor trichostatin a promotes totipotency in the male gametophyte. Plant Cell 26: 195-209.
34. Harbour JW, Dean DC, (2000) The Rb/E2F pathway: expanding roles and emerging paradigms. Genes Dev 14: 2393-2409.
35. Wildwater M, Campilho A, Perez-Perez JM, Heidstra R, Blilou I, et al. (2005) The RETINOBLASTOMA-RELATED gene regulates stem cell maintenance in Arabidopsis roots. Cell 123: 1337-1349.
36. Ebel C, Mariconti L, Gruissem W, (2004) Plant retinoblastoma homologues control nuclear proliferation in the female gametophyte. Nature 429: 776-780.
37. Chen Z, Hafidh S, Poh SH, Twell D, Berger F, (2009) Proliferation and cell fate establishment during Arabidopsis male gametogenesis depends on the Retinoblastoma protein. Proc Natl Acad Sci U S A 106: 7257-7262.
38. Loraine AE, McCormick S, Estrada A, Patel K, Qin P, (2013) RNA-seq of Arabidopsis pollen uncovers novel transcription and alternative splicing. Plant Physiol 162: 1092-1109.
39. Slotkin RK, Vaughn M, Borges F, Tanurdzic M, Becker JD, et al. (2009) Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell 136: 461-472.
40. Scarpin R, Sigaut L, Pietrasanta L, McCormick S, Zheng B, et al. (2013) Cajal Bodies Are Developmentally Regulated during Pollen Development and Pollen Tube Growth in Arabidopsis thaliana. Mol Plant 6: 1355-1357.
41. Vert G, Chory J, (2006) Downstream nuclear events in brassinosteroid signalling. Nature 441: 96-100.
42. Li CF, Pontes O, El-Shami M, Henderson IR, Bernatavichute YV, et al. (2006) An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell 126: 93-106.
43. Boavida LC, McCormick S, (2007) Temperature as a determinant factor for increased and reproducible in vitro pollen germination in Arabidopsis thaliana. Plant J 52: 570-582.