A novel ARID DNA-binding protein interacts with SymRK and is expressed during early nodule development in Lotus japonicus

Plant Physiology

Volumn 148, Issue 1, 2008, Pages 337-347

  Zhu, Hui ^a   Chen, Tao ^a   Zhu, Maosheng ^a   Fang, Qing ^a   Kang, Heng ^a   Hong, Zonglie ^b   Zhang, Zhongming ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^b UNIVERSITY OF IDAHO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALLIUM CEPA; LOTUS CORNICULATUS VAR. JAPONICUS; MESORHIZOBIUM; MESORHIZOBIUM LOTI; RHIZOBIACEAE;

DNA; DNA BINDING PROTEIN; NIN PROTEIN, LOTUS JAPONICUS; TRANSCRIPTION FACTOR; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; DIMERIZATION; GENE EXPRESSION; GROWTH, DEVELOPMENT AND AGING; LOTUS; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NODULATION; PROMOTER REGION; PROTEIN DOMAIN; TRANSACTIVATION;

AMINO ACID SEQUENCE; DIMERIZATION; DNA; DNA-BINDING PROTEINS; GENE EXPRESSION; LOTUS; MOLECULAR SEQUENCE DATA; PLANT PROTEINS; PROMOTER REGIONS (GENETICS); PROTEIN INTERACTION DOMAINS AND MOTIFS; ROOT NODULES, PLANT; TRANS-ACTIVATION (GENETICS); TRANSCRIPTION FACTORS;

EID: 55549138055     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.108.119164     Document Type: Article

References (53)

1. Arrighi JF, Barre A, Ben Amor B, Bersoult A, Soriano LC, Mirabella R, de Carvalho-Niebel F, Journet EP, Gherardi M, Huguet T, et al (2006) The Medicago truncatula lysine motif-receptor-like kinase gene family includes NFP and new nodule-expressed genes. Plant Physiol 142: 265-279
2. Borisov AY, Madsen LH, Tsyganov VE, Umehara Y, Voroshilova VA, Batagov AO, Sandal N, Mortensen A, Schauser L, Ellis N, et al (2003) The Sym35 gene required for root nodule development in pea is an ortholog of NIN from Lotus japonicus. Plant Physiol 131: 1009-1017
3. Denarie J, Debelle F, Prome JC (1996) Rhizobium lipo-chitooligosaccharide nodulation factors: signaling molecules mediating recognition and morphogenesis. Annu Rev Biochem 65: 503-558
4. Ding Z, Gillespie L, Pate G (2003) Human MI-ER1 alpha and beta function as transcriptional repressors by recruitment of histone deacetylase 1 to their conserved ELM2 domain. Mol Cell Biol 23: 250-258
5. Ehrhardt DW, Atkinson EM, Long SR (1992) Depolarization of alfalfa root hair membrane potential by Rhizobium meliloti Nod factors. Science 256: 998-1000
6. Ehrhardt DW, Wais R, Long SR (1996) Calcium spiking in plant root hairs responding to Rhizobium nodulation signals. Cell 85: 673-681
7. Endre G, Kereszt A, Kevei Z, Mihacea S, Kalo P, Kiss GB (2002) A receptor kinase gene regulating symbiosis nodule development. Nature 417: 962-966
8. Fahraeus A (1957) The infection of clover root hairs by nodule bacteria studied by a simple glass slide technique. J Gen Microbiol 16: 374-381
9. Felle HH, Kondorosi E, Kondorosi A, Schultze M (1995) Nod signal-induced plasma membrane potential changes in alfalfa root hairs are differentially sensitive to structural modifications of the lipochitooligosaccharide. Plant J 7: 939-947
10. Felle HH, Kondorosi E, Kondorosi A, Schultze M (1996) Rapid alkalinazation in alfalfa root hairs in response to rhizobia lipochitooligosaccharide signals. Plant J 10: 295-301
11. Gleason C, Chaudhuri S, Yang T, Munoz A, Poovaiah BW, Oldroyd GE (2006) Nodulation independent of rhizobia induced by a calcium-activated kinase lacking autoinhibition. Nature 441: 1149-1152
12. Gregory SL, Kortschak RD, Kalionis B, Saint R (1996) Characterization of the dead ringer gene identifies a novel, highly conserved family of sequence-specific DNA-binding proteins. Mol Cell Biol 16: 792-799
13. Heckmann AB, Lombardo F, Miwa H, Perry JA, Bunnewell S, Parniske M, Wang TL, Downie JA (2006) Lotus japonicus nodulation requires two GRAS domain regulators, one of which is functionally conserved in a non-legume. Plant Physiol 142: 1739-1750
14. Herrscher RF, Kaplan MH, Lelsz DL, Das C, Scheuermann R, Tucker PW (1995) The immunoglobulin heavy-chain matrix-associating regions are bound by Bright: a B cell-specific trans-activator that describes a new DNA-binding protein family. Genes Dev 9: 3067-3082
15. Iwahara J, Clubb RT (1999) Solution structure of the DNA binding domain from Dead ringer, a sequence-specific AT-rich interaction domain (ARID). EMBO J 18: 6084-6094
16. Iwahara J, Iwahara M, Daughdrill GW, Ford J, Clubb RT (2002) The structure of the Dead ringer-DNA complex reveals how AT-rich interaction domains (ARIDs) recognize DNA. EMBO J 21: 1197-1209
17. Kevei Z, Lougnon G, Mergaert P, Horvath GV, Kereszt A, Jayaraman D, Zaman N, Marcel F, Regulski Z, Kiss GB, et al (2007) 3-Hydroxy-3- methylglutaryl coenzyme A reductase 1 interacts with NORK and is crucial for nodulation in Medicago truncatula. Plant Cell 19: 3974-3989
18. Kistner C, Winzer T, Pitzschke A, Mulder L, Sato S, Kaneko T, Tabata S, Sandal N, Stougaard J, Parniske M (2005) Seven Lotus japonicus genes required for transcriptional reprogramming of the root during fungal and bacterial symbiosis. Plant Cell 17: 2217-2229
19. Kortschak RD, Tucker PW, Saint R (2000) ARID proteins come in from the desert. Trends Biochem Sci 25: 294-299
20. Kurkdjian AC (1995) Role of the differentiation of root epidermal cells in Nod factor (from Rhizobium meliloti) induced root hair depolarization of Medicago sativa. Plant Physiol 107: 783-790
21. Lerouge P, Roche P, Faucher C, Maillet F, Truchet G, Prome JC, Denarie J (1990) Symbiotic host-specificity of Rhizoium meliloti is determined by sulphated and acetylated glucosamine oligosaccharide signal. Nature 344: 781-784
22. Limpens E, Bisseling T (2003) Signaling in symbiosis. Curr Opin Plant Biol 6: 343-350
23. Limpens E, Franken C, Smit P, Willemse J, Bisseling T, Geurts R (2003) LysM domain receptor kinases regulating rhizobial Nod factor-induced infection. Science 302: 630-633
24. Ma L, Hong Z, Zhang Z (2007) Perinuclear and nuclear envelop localizations of Arabidopsis Ran proteins. Plant Cell Rep 26: 1373-1382
25. Madsen EB, Madsen LH, Radutoiu S, Olbryt M, Rakwalska M, Szczyglowski K, Sato S, Kaneko T, Tabata S, Sandal N, et al (2003) A receptor kinase gene of the LysM type is involved in legume perception of rhizobial signals. Nature 425: 637-640
26. Margaert P, Van Montagu M, Prome JC, Holsters M (1993) Three unusual modifications, a D-arabinosyl, an N-methyl, and a carbamoyl group, are present on the Nod factors of Azorhizobium caulinodans strain ORS571. Proc Natl Acad Sci USA 90: 1551-1555
27. Miller J (1972) Experiments in Molecular Genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp 352-355
28. Nixon JC, Rajaiya J, Webb CF (2004) Characterization of dominant negative forms of the transcription factor, Bright. J Biol Chem 279: 52465-52472
29. Oldroyd GED, Dowine JA (2004) Calcium kinase and nodulation signaling in legumes. Nat Rev Mol Cell Biol 5: 566-576
30. Peck MC, Fisher RF, Long SR (2006) Diverse flavonoids stimulate NodD1 binding to nod gene promoters in Sinorhizobium meliloti. J Bacteriol 188: 5417-5427
31. Radutoiu S, Madsen LH, Madsen EB, Felle HH, Umehara Y, Gronlund M, Sato S, Nakamura Y, Tabata S, Sandal N, et al (2003) Plant recognition of symbiotic bacteria requires two LysM receptor-like kinase. Nature 425: 585-592
32. Radutoiu S, Madsen LH, Madsen EB, Jurkiewicz A, Fukai E, Quistgaard EM, Albrektsen AS, James EK, Thirup S, Stougaard J (2007) LysM domains mediate lipochitin-oligosaccharide recognition and Nfr genes extend the symbiotic host range. EMBO J 26: 3923-3935
33. Ramon-Maiques S, Kuo AJ, Carney D, Matthews AG, Oettinger MA, Gozani O, Yang W (2007) The plant homeodomain finger of RAG2 recognizes histone H3 methylated at both lysine-4 and arginine-2. Proc Natl Acad Sci USA 104: 18993-18998
34. Relic B, Talmont F, Kopcinska J, Golinowski W, Prome JC, Broughton WJ (1993) Biological activity of Rhizobium sp. NGR234 Nod-factors on Macroptilium atropurpureum. Mol Plant Microbe Interact 6: 764-774
35. Sanjuan J, Carlson RW, Spaink HP, Bhat RU, Barbour MW, Glushka J, Stacey G (1992) A 2-O-methylfucose moiety is present in the lipooligosaccharide nodulation signal of Bradyrhizobium japonicu. Proc Natl Acad Sci USA 89: 8789-8793
36. Scharf KD, Siddique M, Vierling E (2001) The expanding family of Arabidopsis thaliana small heat stress proteins and a new family of proteins containing alpha-crystallin domains (Acd proteins). Cell Stress Chaperones 6: 225-237
37. Schauser L, Roussis A, Stiller J, Stougaard J (1999) A plant regulator controlling development of symbiotic root nodules. Nature 402: 191-195
38. Shiu SH, Karlowski WM, Pan R, Tzeng YH, Mayer KFX, Li WH (2004) Comparative analysis of the receptor-like kinase family in Arabidopsis and rice. Plant Cell 16: 1220-1234
39. Smit P, Raedts J, Portyanko V, Debellé F, Gough C, Bisseling T, Geurts R (2005) NSP1 of the GRAS protein family is essential for rhizobial Nod factor-induced transcription. Science 308: 1789-1791
40. Spaink HP, Sheeley DM, van Brussel AA, Glushka J, York WS, Tak T, Geiger O, Kennedy EP, Reinhold VN, Lugtenberg BJ (1991) A novel highly unsaturated fatty acid moiety of lipo-oligosaccharide signals determines host specificity of Rhizobium. Nature 354: 125-130
41. Steen A, Buist G, Horsburgh GJ, Venema G, Kuipers OP, Foster SJ, Kok J (2005) AcmA of Lactococcus lactis is an N-acetylglucosamininidase with an optimal number of LysMdomains for proper functioning. FEBS J 272: 2854-2868
42. Steen A, Buist G, Leenhouts KJ, El Khattabi M, Grijpstra F, Zomer AL, Venema G, Kuipers OP, Kok J (2003) Cell wall attachment of a widely distributed peptidoglycan domain is hindered by cell wall constituents. J Biol Chem 278: 23874-23881
43. Stracke S, Kistner C, Yoshida S, Mulder L, Sato S, Kaneko T, Sandal N, Stougaard J, Szczyglowski K, Parniske M (2002) A plant receptor-like kinase required for both fugal and bacterial symbiosis. Nature 417: 959-962
44. StrosM, Launholt D, Grasser KD (2007) The HMG-box: a versatile protein domain occurring in a wide variety of DNA-binding proteins. Cell Mol Life Sci 64: 2590-2606
45. Tan K, Shaw AL, Madsen B, Jensen K, Taylor-Papadimitriou J, Freemont PS (2003) Human PLU-1 has transcriptional repression properties and interacts with the developmental transcription factors BF-1 and PAX9. J Biol Chem 278: 20507-20513
46. Valentine SA, Chen G, Shandala T, Fernandez J, Mische S, Saint R, Courey AJ (1998) Dorsal-mediated repression requires the formation of a multiprotein repression complex at the ventral silencer. Mol Cell Biol 18: 6584-6594
47. Wang CH, Su LH, Sun CH (2007) A novel ARID/Bright-like protein involved in transcriptional activation of cyst wall protein 1 gene in Giardia lamblia. J Biol Chem 282: 8905-8914
48. Webb KJ, Skot L, Nicholson MN, Jorgensen B, Mizen S (2000) Mesorhizobium loti increases root-specific expression of a calcium-binding protein homologue identified by promoter tagging in Lotus japonicus. Mol Plant Microbe Interact 13: 606-616
49. Wilsker D, Patsialou A, Dallas PB, Moran E (2002) ARID proteins: a diverse family of DNA binding proteins implicated in the control of cell growth, differentiation, and development. Cell Growth Differ 146: 95-106
50. Wilsker D, Probst L, Wain HM, Maltais L, Tucker PW, Moran E (2005) Nomenclature of the ARID family of DNA-binding proteins. Genomics 86: 242-251
51. Yoshida S, Parniske M (2005) Regulation of plant symbiosis receptor kinase (SymRK) through serine and threonine phosphorylation. J Biol Chem 280: 9203-9209
52. Zhang Z, Hong Z, Verma DPS (2000) Phragmoplastin polymerizes into spiral coiled structures via intermolecular interaction of two self-assembly domains. J Biol Chem 275: 8779-8784
53. Zhang Z, Quick MK, Kanelakis KC, Gijzen M, Krishna P (2003) Characterization of a plant homolog of Hop, a cochaperone of Hsp90. Plant Physiol 103: 525-535