-
1
-
-
80053133499
-
Evidence for several waves of global transmission in the seventh cholera pandemic
-
Mutreja A, Kim DW, Thomson NR, Connor TR, Lee JH, et al. (2011) Evidence for several waves of global transmission in the seventh cholera pandemic. Nature 477: 462-465.
-
(2011)
Nature
, vol.477
, pp. 462-465
-
-
Mutreja, A.1
Kim, D.W.2
Thomson, N.R.3
Connor, T.R.4
Lee, J.H.5
-
2
-
-
33750956238
-
Cholera due to altered El Tor strains of Vibrio cholerae O1 in Bangladesh
-
Nair GB, Qadri F, Holmgren J, Svennerholm AM, Safa A, et al. (2006) Cholera due to altered El Tor strains of Vibrio cholerae O1 in Bangladesh. J Clin Microbiol 44: 4211-4213.
-
(2006)
J Clin Microbiol
, vol.44
, pp. 4211-4213
-
-
Nair, G.B.1
Qadri, F.2
Holmgren, J.3
Svennerholm, A.M.4
Safa, A.5
-
3
-
-
76549100803
-
El Tor cholera with severe disease: a new threat to Asia and beyond
-
Siddique AK, Nair GB, Alam M, Sack DA, Huq A, et al. (2010) El Tor cholera with severe disease: a new threat to Asia and beyond. Epidemiol Infect 138: 347-352.
-
(2010)
Epidemiol Infect
, vol.138
, pp. 347-352
-
-
Siddique, A.K.1
Nair, G.B.2
Alam, M.3
Sack, D.A.4
Huq, A.5
-
4
-
-
79961085080
-
Cholera, 2010
-
WHO
-
WHO (2011) Cholera, 2010. Wkly Epidemiol Rec 86: 325-339.
-
(2011)
Wkly Epidemiol Rec
, vol.86
, pp. 325-339
-
-
-
5
-
-
84865284056
-
Cholera, 2011
-
WHO
-
WHO (2012) Cholera, 2011. Wkly Epidemiol Rec 87: 289-304.
-
(2012)
Wkly Epidemiol Rec
, vol.87
, pp. 289-304
-
-
-
6
-
-
77649147238
-
Cholera in India: an analysis of reports, 1997-2006
-
Kanungo S, Sah BK, Lopez AL, Sung JS, Paisley AM, et al. (2010) Cholera in India: an analysis of reports, 1997-2006. Bull World Health Organ 88: 185-191.
-
(2010)
Bull World Health Organ
, vol.88
, pp. 185-191
-
-
Kanungo, S.1
Sah, B.K.2
Lopez, A.L.3
Sung, J.S.4
Paisley, A.M.5
-
7
-
-
0035436505
-
Epidemiological investigation of cholera outbreak in a periurban slum colony in Chandigarh
-
Thakur JS, Swami HM, Dutt R, Mehta M, Gupta V, (2001) Epidemiological investigation of cholera outbreak in a periurban slum colony in Chandigarh. Indian J Med Sci 55: 429-433.
-
(2001)
Indian J Med Sci
, vol.55
, pp. 429-433
-
-
Thakur, J.S.1
Swami, H.M.2
Dutt, R.3
Mehta, M.4
Gupta, V.5
-
8
-
-
0344899211
-
A recent outbreak of cholera due to Vibrio cholerae O1 Ogawa in & around Chandigarh, North India
-
Taneja N, Kaur J, Sharma K, Singh M, Kalra JK, et al. (2003) A recent outbreak of cholera due to Vibrio cholerae O1 Ogawa in & around Chandigarh, North India. Indian J Med Res 117: 243-246.
-
(2003)
Indian J Med Res
, vol.117
, pp. 243-246
-
-
Taneja, N.1
Kaur, J.2
Sharma, K.3
Singh, M.4
Kalra, J.K.5
-
9
-
-
33144480300
-
Outbreak of cholera in & around Chandigarh during two successive years (2002, 2003)
-
Kaistha N, Mehta M, Gautam V, Gupta V, (2005) Outbreak of cholera in & around Chandigarh during two successive years (2002, 2003). Indian J Med Res 122: 404-407.
-
(2005)
Indian J Med Res
, vol.122
, pp. 404-407
-
-
Kaistha, N.1
Mehta, M.2
Gautam, V.3
Gupta, V.4
-
10
-
-
63849315801
-
Outbreaks caused by new variants of Vibrio cholerae O1 El Tor, India
-
Taneja N, Mishra A, Sangar G, Singh G, Sharma M, (2009) Outbreaks caused by new variants of Vibrio cholerae O1 El Tor, India. Emerg Infect Dis 15: 352-354.
-
(2009)
Emerg Infect Dis
, vol.15
, pp. 352-354
-
-
Taneja, N.1
Mishra, A.2
Sangar, G.3
Singh, G.4
Sharma, M.5
-
11
-
-
70349143483
-
Epidemiology & antibiograms of Vibrio cholerae isolates from a tertiary care hospital in Chandigarh, north India
-
Chander J, Kaistha N, Gupta V, Mehta M, Singla N, et al. (2009) Epidemiology & antibiograms of Vibrio cholerae isolates from a tertiary care hospital in Chandigarh, north India. Indian J Med Res 129: 613-617.
-
(2009)
Indian J Med Res
, vol.129
, pp. 613-617
-
-
Chander, J.1
Kaistha, N.2
Gupta, V.3
Mehta, M.4
Singla, N.5
-
12
-
-
0023236910
-
Evaluation of the multitest medium for rapid presumptive identification of Vibrio cholerae from environmental sources
-
Nair GB, Misra S, Bhadra RK, Pal SC, (1987) Evaluation of the multitest medium for rapid presumptive identification of Vibrio cholerae from environmental sources. Appl Environ Microbiol 53: 1203-1205.
-
(1987)
Appl Environ Microbiol
, vol.53
, pp. 1203-1205
-
-
Nair, G.B.1
Misra, S.2
Bhadra, R.K.3
Pal, S.C.4
-
13
-
-
33745107567
-
Surveillance methodology for Vibrio cholerae in environmental samples
-
Tamrakar AK, Goel AK, Kamboj DV, Singh L, (2006) Surveillance methodology for Vibrio cholerae in environmental samples. Int J Environ Health Res 16: 305-312.
-
(2006)
Int J Environ Health Res
, vol.16
, pp. 305-312
-
-
Tamrakar, A.K.1
Goel, A.K.2
Kamboj, D.V.3
Singh, L.4
-
14
-
-
0014415398
-
Bacteriophage typing of Vibrio eltor
-
Basu S, Mukerjee S, (1968) Bacteriophage typing of Vibrio eltor. Experientia 24: 299-300.
-
(1968)
Experientia
, vol.24
, pp. 299-300
-
-
Basu, S.1
Mukerjee, S.2
-
15
-
-
0027154814
-
New phage typing scheme for Vibrio cholerae O1 biotype El Tor strains
-
Chattopadhyay DJ, Sarkar BL, Ansari MQ, Chakrabarti BK, Roy MK, et al. (1993) New phage typing scheme for Vibrio cholerae O1 biotype El Tor strains. J Clin Microbiol 31: 1579-1585.
-
(1993)
J Clin Microbiol
, vol.31
, pp. 1579-1585
-
-
Chattopadhyay, D.J.1
Sarkar, B.L.2
Ansari, M.Q.3
Chakrabarti, B.K.4
Roy, M.K.5
-
16
-
-
0037710467
-
Molecular epidemiology of O139 Vibrio cholerae: mutation, lateral gene transfer, and founder flush
-
Garg P, Aydanian A, Smith D, J. Glenn M J, Nair GB, et al. (2003) Molecular epidemiology of O139 Vibrio cholerae: mutation, lateral gene transfer, and founder flush. Emerg Infect Dis 9: 810-814.
-
(2003)
Emerg Infect Dis
, vol.9
, pp. 810-814
-
-
Garg, P.1
Aydanian, A.2
Smith, D.3
Glenn, J.M.J.4
Nair, G.B.5
-
17
-
-
45249101579
-
Seasonal cholera from multiple small outbreaks, rural Bangladesh
-
Stine OC, Alam M, Tang L, Nair GB, Siddique AK, et al. (2008) Seasonal cholera from multiple small outbreaks, rural Bangladesh. Emerg Infect Dis 14: 831-833.
-
(2008)
Emerg Infect Dis
, vol.14
, pp. 831-833
-
-
Stine, O.C.1
Alam, M.2
Tang, L.3
Nair, G.B.4
Siddique, A.K.5
-
18
-
-
0033555906
-
Tandem repeats finder: a program to analyze DNA sequences
-
Benson G, (1999) Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res 27: 573-580.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 573-580
-
-
Benson, G.1
-
19
-
-
79251544864
-
Rapid pneumococcal evolution in response to clinical interventions
-
Croucher NJ, Harris SR, Fraser C, Quail MA, Burton J, et al. (2011) Rapid pneumococcal evolution in response to clinical interventions. Science 331: 430-434.
-
(2011)
Science
, vol.331
, pp. 430-434
-
-
Croucher, N.J.1
Harris, S.R.2
Fraser, C.3
Quail, M.A.4
Burton, J.5
-
20
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A, (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
21
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
Yang Z, (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
22
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E, (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
23
-
-
67650735586
-
ABACAS: algorithm-based automatic contiguation of assembled sequences
-
Assefa S, Keane TM, Otto TD, Newbold C, Berriman M, (2009) ABACAS: algorithm-based automatic contiguation of assembled sequences. Bioinformatics 25: 1968-1969.
-
(2009)
Bioinformatics
, vol.25
, pp. 1968-1969
-
-
Assefa, S.1
Keane, T.M.2
Otto, T.D.3
Newbold, C.4
Berriman, M.5
-
24
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
25
-
-
56649123520
-
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database
-
Carver T, Berriman M, Tivey A, Patel C, Bohme U, et al. (2008) Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinformatics 24: 2672-2676.
-
(2008)
Bioinformatics
, vol.24
, pp. 2672-2676
-
-
Carver, T.1
Berriman, M.2
Tivey, A.3
Patel, C.4
Bohme, U.5
-
26
-
-
84874206268
-
Clinical isolates of Vibrio cholerae O1 El Tor Ogawa of 2009 from Kolkata, India: preponderance of SXT element and presence of Haitian ctxB variant
-
Kutar BM, Rajpara N, Upadhyay H, Ramamurthy T, Bhardwaj AK, (2013) Clinical isolates of Vibrio cholerae O1 El Tor Ogawa of 2009 from Kolkata, India: preponderance of SXT element and presence of Haitian ctxB variant. PLoS One 8: e56477.
-
(2013)
PLoS One
, vol.8
-
-
Kutar, B.M.1
Rajpara, N.2
Upadhyay, H.3
Ramamurthy, T.4
Bhardwaj, A.K.5
-
27
-
-
80052597651
-
Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak
-
Hendriksen RS, Price LB, Schupp JM, Gillece JD, Kaas RS, et al. (2011) Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak. mBio 2: e00157-00111.
-
(2011)
MBio
, vol.2
-
-
Hendriksen, R.S.1
Price, L.B.2
Schupp, J.M.3
Gillece, J.D.4
Kaas, R.S.5
-
28
-
-
84930485738
-
Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa
-
Reimer AR, Van Domselaar G, Stroika S, Walker M, Kent H, et al. (2011) Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa. Emerg Infect Dis 17: 2113-2121.
-
(2011)
Emerg Infect Dis
, vol.17
, pp. 2113-2121
-
-
Reimer, A.R.1
Van Domselaar, G.2
Stroika, S.3
Walker, M.4
Kent, H.5
-
29
-
-
78650854393
-
The origin of the Haitian cholera outbreak strain
-
Chin CS, Sorenson J, Harris JB, Robins WP, Charles RC, et al. (2011) The origin of the Haitian cholera outbreak strain. N Engl J Med 364: 33-42.
-
(2011)
N Engl J Med
, vol.364
, pp. 33-42
-
-
Chin, C.S.1
Sorenson, J.2
Harris, J.B.3
Robins, W.P.4
Charles, R.C.5
-
30
-
-
38749125193
-
Three pathogenicity islands of Vibrio cholerae can excise from the chromosome and form circular intermediates
-
Murphy RA, Boyd EF, (2008) Three pathogenicity islands of Vibrio cholerae can excise from the chromosome and form circular intermediates. J Bacteriol 190: 636-647.
-
(2008)
J Bacteriol
, vol.190
, pp. 636-647
-
-
Murphy, R.A.1
Boyd, E.F.2
-
31
-
-
77953525111
-
Discovery of novel Vibrio cholerae VSP-II genomic islands using comparative genomic analysis
-
Taviani E, Grim CJ, Choi J, Chun J, Haley B, et al. (2010) Discovery of novel Vibrio cholerae VSP-II genomic islands using comparative genomic analysis. FEMS Microbiol Lett 308: 130-137.
-
(2010)
FEMS Microbiol Lett
, vol.308
, pp. 130-137
-
-
Taviani, E.1
Grim, C.J.2
Choi, J.3
Chun, J.4
Haley, B.5
-
32
-
-
59949092995
-
A large cholera outbreak due to a new cholera toxin variant of the Vibrio cholerae O1 El Tor biotype in Orissa, Eastern India
-
Kumar P, Jain M, Goel AK, Bhadauria S, Sharma SK, et al. (2009) A large cholera outbreak due to a new cholera toxin variant of the Vibrio cholerae O1 El Tor biotype in Orissa, Eastern India. J Med Microbiol 58: 234-238.
-
(2009)
J Med Microbiol
, vol.58
, pp. 234-238
-
-
Kumar, P.1
Jain, M.2
Goel, A.K.3
Bhadauria, S.4
Sharma, S.K.5
-
33
-
-
0029986215
-
A new type of conjugative transposon encodes resistance to sulfamethoxazole, trimethoprim, and streptomycin in Vibrio cholerae O139
-
Waldor MK, Tschape H, Mekalanos JJ, (1996) A new type of conjugative transposon encodes resistance to sulfamethoxazole, trimethoprim, and streptomycin in Vibrio cholerae O139. Journal of bacteriology 178: 4157-4165.
-
(1996)
Journal of Bacteriology
, vol.178
, pp. 4157-4165
-
-
Waldor, M.K.1
Tschape, H.2
Mekalanos, J.J.3
-
34
-
-
33646060681
-
The current ICE age: biology and evolution of SXT-related integrating conjugative elements
-
Burrus V, Marrero J, Waldor MK, (2006) The current ICE age: biology and evolution of SXT-related integrating conjugative elements. Plasmid 55: 173-183.
-
(2006)
Plasmid
, vol.55
, pp. 173-183
-
-
Burrus, V.1
Marrero, J.2
Waldor, M.K.3
-
35
-
-
0032910190
-
Site-specific integration of the conjugal Vibrio cholerae SXT element into prfC
-
Hochhut B, Waldor MK, (1999) Site-specific integration of the conjugal Vibrio cholerae SXT element into prfC. Molecular microbiology 32: 99-110.
-
(1999)
Molecular Microbiology
, vol.32
, pp. 99-110
-
-
Hochhut, B.1
Waldor, M.K.2
-
36
-
-
74249093709
-
Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs
-
Wozniak RAF, Fouts DE, Spagnoletti M, Colombo MM, Ceccarelli D, et al. (2009) Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genetics 5: e1000786.
-
(2009)
PLoS Genetics
, vol.5
-
-
Wozniak, R.A.F.1
Fouts, D.E.2
Spagnoletti, M.3
Colombo, M.M.4
Ceccarelli, D.5
-
37
-
-
79952706969
-
ICEVchInd5 is prevalent in epidemic Vibrio cholerae O1 El Tor strains isolated in India
-
Ceccarelli D, Spagnoletti M, Bacciu D, Danin-Poleg Y, Mendiratta DK, et al. (2011) ICEVchInd5 is prevalent in epidemic Vibrio cholerae O1 El Tor strains isolated in India. Int J Med Microbiol 301: 318-324.
-
(2011)
Int J Med Microbiol
, vol.301
, pp. 318-324
-
-
Ceccarelli, D.1
Spagnoletti, M.2
Bacciu, D.3
Danin-Poleg, Y.4
Mendiratta, D.K.5
-
38
-
-
84930476798
-
Drug-resistance mechanisms in Vibrio cholerae O1 outbreak strain, Haiti, 2010
-
Sjolund-Karlsson M, Reimer A, Folster JP, Walker M, Dahourou GA, et al. (2011) Drug-resistance mechanisms in Vibrio cholerae O1 outbreak strain, Haiti, 2010. Emerg Infect Dis 17: 2151-2154.
-
(2011)
Emerg Infect Dis
, vol.17
, pp. 2151-2154
-
-
Sjolund-Karlsson, M.1
Reimer, A.2
Folster, J.P.3
Walker, M.4
Dahourou, G.A.5
-
39
-
-
77956518764
-
Relatedness of Vibrio cholerae O1/O139 isolates from patients and their household contacts, determined by multilocus variable-number tandem-repeat analysis
-
Kendall EA, Chowdhury F, Begum Y, Khan AI, Li S, et al. (2010) Relatedness of Vibrio cholerae O1/O139 isolates from patients and their household contacts, determined by multilocus variable-number tandem-repeat analysis. J Bacteriol 192: 4367-4376.
-
(2010)
J Bacteriol
, vol.192
, pp. 4367-4376
-
-
Kendall, E.A.1
Chowdhury, F.2
Begum, Y.3
Khan, A.I.4
Li, S.5
-
40
-
-
53849124343
-
Epidemiological study of Vibrio cholerae using variable number of tandem repeats
-
Ghosh R, Nair GB, Tang L, Morris JG, Sharma NC, et al. (2008) Epidemiological study of Vibrio cholerae using variable number of tandem repeats. FEMS Microbiol Lett 288: 196-201.
-
(2008)
FEMS Microbiol Lett
, vol.288
, pp. 196-201
-
-
Ghosh, R.1
Nair, G.B.2
Tang, L.3
Morris, J.G.4
Sharma, N.C.5
-
41
-
-
84861336530
-
Multi-locus variable number tandem repeat analysis of 7th pandemic Vibrio cholerae
-
Lam C, Octavia S, Reeves PR, Lan R, (2012) Multi-locus variable number tandem repeat analysis of 7th pandemic Vibrio cholerae. BMC Microbiol 12: 82.
-
(2012)
BMC Microbiol
, vol.12
, pp. 82
-
-
Lam, C.1
Octavia, S.2
Reeves, P.R.3
Lan, R.4
-
42
-
-
84883354936
-
Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti
-
Katz LS, Petkau A, Beaulaurier J, Tyler S, Antonova ES, et al. (2013) Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti. mBio 4: e00398-13.
-
(2013)
MBio
, vol.4
-
-
Katz, L.S.1
Petkau, A.2
Beaulaurier, J.3
Tyler, S.4
Antonova, E.S.5
-
43
-
-
84884191420
-
A Study on the Geophylogeny of Clinical and Environmental Vibrio cholerae in Kenya
-
Kiiru J, Mutreja A, Mohamed AA, Kimani RW, Mwituria J, et al. (2013) A Study on the Geophylogeny of Clinical and Environmental Vibrio cholerae in Kenya. PLoS One 8: e74829.
-
(2013)
PLoS One
, vol.8
-
-
Kiiru, J.1
Mutreja, A.2
Mohamed, A.A.3
Kimani, R.W.4
Mwituria, J.5
|