-
1
-
-
84876561822
-
Deploying bioinformatics workflows on clouds with Galaxy and Globus provision
-
Bo L, Sotomayor B, Madduri R, Chard K, Foster I,. Deploying bioinformatics workflows on clouds with Galaxy and Globus provision. in High Performance Computing, Networking, Storage and Analysis (SCC), 2012 SC Companion:, 2012, pp. 1087-1095.
-
(2012)
High Performance Computing, Networking, Storage and Analysis (SCC), 2012 SC Companion
, pp. 1087-1095
-
-
Bo, L.1
Sotomayor, B.2
Madduri, R.3
Chard, K.4
Foster, I.5
-
2
-
-
84882314832
-
Experiences in building a next-generation sequencing analysis service using galaxy, Globus online and Amazon web service
-
presented at the San Diego, California
-
Madduri RK, Dave P, Sulakhe D, Lacinski L, Liu B, Foster IT,. Experiences in building a next-generation sequencing analysis service using galaxy, Globus online and Amazon web service, presented at the Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery, San Diego, California, 2013.
-
(2013)
Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery
-
-
Madduri, R.K.1
Dave, P.2
Sulakhe, D.3
Lacinski, L.4
Liu, B.5
Foster, I.T.6
-
3
-
-
80054746492
-
Exome sequencing as a tool for Mendelian disease gene discovery
-
Bamshad MJ, Ng SB, Bigham AW, Tabor HK, Emond MJ, Nickerson DA, et al., Exome sequencing as a tool for Mendelian disease gene discovery. Nature Reviews Genetics 2011; 12: 745-755.
-
(2011)
Nature Reviews Genetics
, vol.12
, pp. 745-755
-
-
Bamshad, M.J.1
Ng, S.B.2
Bigham, A.W.3
Tabor, H.K.4
Emond, M.J.5
Nickerson, D.A.6
-
4
-
-
77956838065
-
Advances in understanding cancer genomes through second-generation sequencing
-
Meyerson M, Gabriel S, Getz G,. Advances in understanding cancer genomes through second-generation sequencing. Nature Reviews Genetics 2010; 11: 685-696.
-
(2010)
Nature Reviews Genetics
, vol.11
, pp. 685-696
-
-
Meyerson, M.1
Gabriel, S.2
Getz, G.3
-
5
-
-
77954526823
-
The case for cloud computing in genome informatics
-
Stein LD,. The case for cloud computing in genome informatics. Genome Biology 2010; 11: 207.
-
(2010)
Genome Biology
, vol.11
, pp. 207
-
-
Stein, L.D.1
-
6
-
-
77955801615
-
Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
Goecks J, Nekrutenko A, Taylor J,. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biology 2010; 11: R86.
-
(2010)
Genome Biology
, vol.11
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
7
-
-
79955560861
-
Globus online: Accelerating and democratizing science through cloud-based services
-
doi: 10.1109/MIC.2011.64
-
Foster I,. Globus online: accelerating and democratizing science through cloud-based services. IEEE Internet Computing 2011; 15 (3): 70-73, doi: 10.1109/MIC.2011.64.
-
(2011)
IEEE Internet Computing
, vol.15
, Issue.3
, pp. 70-73
-
-
Foster, I.1
-
8
-
-
84856912379
-
Software as a service for data scientists
-
Allen B, Bresnahan J, Childers L, Foster I, Kandaswamy G, Kettimuthu R, et al., Software as a service for data scientists. Communications of the ACM 2012; 55: 81-88.
-
(2012)
Communications of the ACM
, vol.55
, pp. 81-88
-
-
Allen, B.1
Bresnahan, J.2
Childers, L.3
Foster, I.4
Kandaswamy, G.5
Kettimuthu, R.6
-
9
-
-
84893543611
-
-
Science Gateway Institute Workshop, co-located with IEEE Cluster
-
Ananthakrishnan R, Bryan J, Chard K, Foster I, Howe T, Lidman M, et al,. Globus nexus: an identity, profile, and group management platform for science gateways and other collaborative science applications. in Science Gateway Institute Workshop, co-located with IEEE Cluster, 2013.
-
(2013)
Globus Nexus: An Identity, Profile, and Group Management Platform for Science Gateways and Other Collaborative Science Applications
-
-
Ananthakrishnan, R.1
Bryan, J.2
Chard, K.3
Foster, I.4
Howe, T.5
Lidman, M.6
-
10
-
-
84905090391
-
-
Amazon. Amazon Web Services
-
Amazon. 2013. Amazon Web Services. Available: http://www.aws.amazon.com
-
(2013)
-
-
-
11
-
-
80755125553
-
Harnessing cloud computing with Galaxy Cloud
-
Afgan E, Baker D, Coraor N, Goto H, Paul IM, Makova KD, et al., Harnessing cloud computing with Galaxy Cloud. Nature Biotechnology 2011; 29: 972-974.
-
(2011)
Nature Biotechnology
, vol.29
, pp. 972-974
-
-
Afgan, E.1
Baker, D.2
Coraor, N.3
Goto, H.4
Paul, I.M.5
Makova, K.D.6
-
13
-
-
84858330364
-
Cloud BioLinux: Pre-configured and on-demand bioinformatics computing for the genomics community
-
Krampis K, Booth T, Chapman B, Tiwari B, Bicak M, Field D, et al., Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community. BMC Bioinformatics 2012; 13: 42.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 42
-
-
Krampis, K.1
Booth, T.2
Chapman, B.3
Tiwari, B.4
Bicak, M.5
Field, D.6
-
14
-
-
84873667419
-
High-performance data management for genome sequencing centers using Globus Online: A case study
-
2012
-
Sulakhe D, Kettimuthu R, Dave U,. High-performance data management for genome sequencing centers using Globus Online: a case study. In E-Science (e-Science), in 2012 IEEE 8th International Conference on, pp. 1-6, 2012, 2012.
-
(2012)
E-Science (E-Science), in 2012 IEEE 8th International Conference On, 1-6
-
-
Sulakhe, D.1
Kettimuthu, R.2
Dave, U.3
-
16
-
-
65649120715
-
CloudBurst: Highly sensitive read mapping with MapReduce
-
Schatz MC,. CloudBurst: highly sensitive read mapping with MapReduce. Bioinformatics 2009; 25: 1363-1369.
-
(2009)
Bioinformatics
, vol.25
, pp. 1363-1369
-
-
Schatz, M.C.1
-
17
-
-
34250159524
-
Genome-wide mapping of in vivo protein-DNA interactions
-
Johnson DS, Mortazavi A, Myers RM, Wold B,. Genome-wide mapping of in vivo protein-DNA interactions. Science 2007; 316: 1497-1502.
-
(2007)
Science
, vol.316
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
Wold, B.4
-
18
-
-
77955343193
-
Cloud-scale RNA-sequencing differential expression analysis with Myrna
-
Langmead B, Hansen KD, Leek JT,. Cloud-scale RNA-sequencing differential expression analysis with Myrna. Genome Biology 2010; 11: R83.
-
(2010)
Genome Biology
, vol.11
-
-
Langmead, B.1
Hansen, K.D.2
Leek, J.T.3
-
19
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, et al., The Sequence Alignment/Map format and SAMtools. Bioinformatics 2009; 25: 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
-
20
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, et al., Model-based analysis of ChIP-Seq (MACS). Genome Biology 2008; 9: R137.
-
(2008)
Genome Biology
, vol.9
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
-
21
-
-
80052317288
-
The CIPRES science gateway: A community resource for phylogenetic analyses
-
presented at the Salt Lake City, Utah
-
Miller MA, Pfeiffer W, Schwartz T,. The CIPRES science gateway: a community resource for phylogenetic analyses, presented at the Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery, Salt Lake City, Utah, 2011.
-
(2011)
Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery
-
-
Miller, M.A.1
Pfeiffer, W.2
Schwartz, T.3
-
23
-
-
74049085844
-
Cloud technologies for bioinformatics applications
-
Qiu X, Ekanayake J, Beason S, Gunarathne T, Fox G, Barga R, et al,. Cloud technologies for bioinformatics applications. in 2nd Workshop on Many-Task Computing on Grids and Supercomputers 2009, p. 6.
-
(2009)
2nd Workshop on Many-Task Computing on Grids and Supercomputers
, pp. 6
-
-
Qiu, X.1
Ekanayake, J.2
Beason, S.3
Gunarathne, T.4
Fox, G.5
Barga, R.6
-
24
-
-
78649986661
-
An overview of the open science data cloud
-
Grossman RL, Gu Y, Mambretti J, Sabala M, Szalay A, White K,. An overview of the open science data cloud. in 19th ACM International Symposium on High Performance Distributed Computing, 2010, pp. 377-384.
-
(2010)
19th ACM International Symposium on High Performance Distributed Computing
, pp. 377-384
-
-
Grossman, R.L.1
Gu, Y.2
Mambretti, J.3
Sabala, M.4
Szalay, A.5
White, K.6
-
25
-
-
80052989953
-
Scalability and cost of a cloud-based approach to medical NLP
-
presented at the Bristol UK
-
Chard K, Russell M, Lussier YA, Mendonça EA, Silverstein JC,. Scalability and cost of a cloud-based approach to medical NLP. presented at the 24th international Symposium on Computer-Based Medical Systems, Bristol UK, 2011.
-
(2011)
24th International Symposium on Computer-Based Medical Systems
-
-
Chard, K.1
Russell, M.2
Lussier, Y.A.3
Mendonça, E.A.4
Silverstein, J.C.5
-
26
-
-
72849149423
-
Searching for SNPs with cloud computing
-
Langmead B, Schatz MC, Lin J, Pop M, Salzberg SL,. Searching for SNPs with cloud computing. Genome Biology 2009; 10: R134.
-
(2009)
Genome Biology
, vol.10
-
-
Langmead, B.1
Schatz, M.C.2
Lin, J.3
Pop, M.4
Salzberg, S.L.5
-
27
-
-
79955523811
-
Cloud technologies for bioinformatics applications
-
Ekanayake J, Gunarathne T, Qiu J,. Cloud technologies for bioinformatics applications. Parallel and Distributed Systems, IEEE Transactions on 2011; 22: 998-1011.
-
(2011)
Parallel and Distributed Systems, IEEE Transactions on
, vol.22
, pp. 998-1011
-
-
Ekanayake, J.1
Gunarathne, T.2
Qiu, J.3
-
28
-
-
84879425374
-
Rainbow: A tool for large-scale whole-genome sequencing data analysis using cloud computing
-
Zhao S, Prenger K, Smith L, Messina T, Fan H, Jaeger E, et al., Rainbow: a tool for large-scale whole-genome sequencing data analysis using cloud computing. BMC Genomics 2013; 14: 425.
-
(2013)
BMC Genomics
, vol.14
, pp. 425
-
-
Zhao, S.1
Prenger, K.2
Smith, L.3
Messina, T.4
Fan, H.5
Jaeger, E.6
-
29
-
-
84876078233
-
Atlas2 Cloud: A framework for personal genome analysis in the cloud
-
Evani U, Challis D, Yu J, Jackson A, Paithankar S, Bainbridge M, et al., Atlas2 Cloud: a framework for personal genome analysis in the cloud. BMC genomics 2012; 13: S19.
-
(2012)
BMC Genomics
, vol.13
-
-
Evani, U.1
Challis, D.2
Yu, J.3
Jackson, A.4
Paithankar, S.5
Bainbridge, M.6
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