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Volumn 9, Issue 7, 2014, Pages

Assessing environmental DNA detection in controlled lentic systems

Author keywords

[No Author keywords available]

Indexed keywords

DNA; ENVIRONMENTAL DNA; UNCLASSIFIED DRUG;

EID: 84905109497     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0103767     Document Type: Article
Times cited : (113)

References (52)
  • 1
    • 46949088285 scopus 로고    scopus 로고
    • Species detection using environmental DNA from water samples
    • DOI 10.1098/rsbl.2008.0118, PII Y0311412102515N0
    • Ficetola G F, Miaud C, Pompanon F, Taberlet P (2008) Species detection using environmental DNA from water samples. Biol Lett 4: 423-425. (Pubitemid 351961462)
    • (2008) Biology Letters , vol.4 , Issue.4 , pp. 423-425
    • Ficetola, G.F.1    Miaud, C.2    Pompanon, F.3    Taberlet, P.4
  • 2
    • 79960795565 scopus 로고    scopus 로고
    • Molecular detection of vertebrates in stream water: A demonstration using rocky mountain tailed frogs and Idaho giant salamanders
    • Goldberg CS, Pilliod D, Arkle R, Waits L (2011) Molecular detection of vertebrates in stream water: a demonstration using rocky mountain tailed frogs and Idaho giant salamanders. PLOS ONE 6: e22746
    • (2011) PLOS ONE , vol.6
    • Goldberg, C.S.1    Pilliod, D.2    Arkle, R.3    Waits, L.4
  • 3
    • 79951983346 scopus 로고    scopus 로고
    • "Sight-unseen" detection of rare aquatic species using environmental DNA
    • Jerde CL, Mahon AR, Chadderton WL, Lodge DM (2011) "Sight- unseen" detection of rare aquatic species using environmental DNA. Conserv Lett 4: 150-157.
    • (2011) Conserv Lett , vol.4 , pp. 150-157
    • Jerde, C.L.1    Mahon, A.R.2    Chadderton, W.L.3    Lodge, D.M.4
  • 5
    • 84861537650 scopus 로고    scopus 로고
    • Conservation in a cup of water: Estimating biodiversity and population abundance from environmental DNA
    • Lodge D, Turner C, Jerde C, Barnes M, Chadderton L, et al. (2012) Conservation in a cup of water: estimating biodiversity and population abundance from environmental DNA. Mol Ecol 11: 2555-2558.
    • (2012) Mol Ecol , vol.11 , pp. 2555-2558
    • Lodge, D.1    Turner, C.2    Jerde, C.3    Barnes, M.4    Chadderton, L.5
  • 6
    • 84861563592 scopus 로고    scopus 로고
    • Monitoring endangered freshwater biodiversity using environmental DNA
    • Thomsen P, Kielgast J, Iversen L, Wiuf C, Rasmussen M, et al. (2012) Monitoring endangered freshwater biodiversity using environmental DNA. Mol Ecol 21: 2565-2573.
    • (2012) Mol Ecol , vol.21 , pp. 2565-2573
    • Thomsen, P.1    Kielgast, J.2    Iversen, L.3    Wiuf, C.4    Rasmussen, M.5
  • 7
    • 84865578208 scopus 로고    scopus 로고
    • Investigating the potential use of environmental DNA (eDNA) for genetic monitoring of marine mammals
    • Foote A, Thomsen P, Sveegaard S, Wahlberg M, Kielgast J, et al. (2012) Investigating the potential use of environmental DNA (eDNA) for genetic monitoring of marine mammals PLOS ONE 7: e4178.
    • (2012) PLOS ONE , vol.7
    • Foote, A.1    Thomsen, P.2    Sveegaard, S.3    Wahlberg, M.4    Kielgast, J.5
  • 9
    • 84863997760 scopus 로고    scopus 로고
    • Improved detection of an alien invasive species through environmental DNA barcoding: The example of the American bullfrog Lithobates catesbeianus
    • Dejean T, Valentini A, Miquel C, Taberlet P, Bellemain E, et al. (2012) Improved detection of an alien invasive species through environmental DNA barcoding: the example of the American bullfrog Lithobates catesbeianus. J Appl Ecol 49: 953-959.
    • (2012) J Appl Ecol , vol.49 , pp. 953-959
    • Dejean, T.1    Valentini, A.2    Miquel, C.3    Taberlet, P.4    Bellemain, E.5
  • 10
    • 84874281159 scopus 로고    scopus 로고
    • Using environmental DNA to estimate the distribution of an invasive fish species in ponds
    • Takahara T, Minamoto T, Doi H (2013) Using environmental DNA to estimate the distribution of an invasive fish species in ponds. PLOS ONE 8: e56584.
    • (2013) PLOS ONE , vol.8
    • Takahara, T.1    Minamoto, T.2    Doi, H.3
  • 11
    • 84875466840 scopus 로고    scopus 로고
    • Robust detection of rare species using environmental DNA: The importance of primer specificity
    • Wilcox TM, McKelvey KS, Young MK, Jane SF, Lowe WH, et al. (2013) Robust detection of rare species using environmental DNA: the importance of primer specificity. PLOS ONE 8: e59520.
    • (2013) PLOS ONE , vol.8
    • Wilcox, T.M.1    McKelvey, K.S.2    Young, M.K.3    Jane, S.F.4    Lowe, W.H.5
  • 12
    • 84895765802 scopus 로고    scopus 로고
    • Transport distance of invertebrate environmental DNA in a natural river
    • Deiner K, Altermatt F (2014) Transport distance of invertebrate environmental DNA in a natural river. PLOS ONE 9: e88786.
    • (2014) PLOS ONE , vol.9
    • Deiner, K.1    Altermatt, F.2
  • 13
    • 84904345282 scopus 로고    scopus 로고
    • Particle size distribution and optimal capture of macrobial eDNA
    • In press
    • Turner C, Barnes M, Charles C, Xu Y (2014) Particle size distribution and optimal capture of macrobial eDNA. Methods Ecol Evol In press.
    • (2014) Methods Ecol Evol
    • Turner, C.1    Barnes, M.2    Charles, C.3    Xu, Y.4
  • 14
    • 84880934164 scopus 로고    scopus 로고
    • Estimating occupancy and abundance of stream amphibians using environmental DNA from filtered water samples
    • Pilliod D, Goldberg C, Arkle R, Waits L (2013) Estimating occupancy and abundance of stream amphibians using environmental DNA from filtered water samples. Can J Fish Aquat Sci 70: 1123-1130.
    • (2013) Can J Fish Aquat Sci , vol.70 , pp. 1123-1130
    • Pilliod, D.1    Goldberg, C.2    Arkle, R.3    Waits, L.4
  • 15
    • 84905097081 scopus 로고    scopus 로고
    • History, applications, methodological issues and perspectives for the use of environmental DNA (eDNA) in marine and freshwater environments
    • In press
    • Díaz-Ferguson E, Moyer G (2014) History, applications, methodological issues and perspectives for the use of environmental DNA (eDNA) in marine and freshwater environments. Rev Biol Trop. In press.
    • (2014) Rev Biol Trop
    • Díaz-Ferguson, E.1    Moyer, G.2
  • 16
    • 80053275663 scopus 로고    scopus 로고
    • From molecules to management: Adopting DNA-based methods for monitoring biological invasions in aquatic environments
    • Darling JA, Mahon AR (2011) From molecules to management: Adopting DNA-based methods for monitoring biological invasions in aquatic environments. Environ Res 111: 978-988.
    • (2011) Environ Res , vol.111 , pp. 978-988
    • Darling, J.A.1    Mahon, A.R.2
  • 17
    • 84879748756 scopus 로고    scopus 로고
    • Site occupancy models in the analysis of environmental DNA presence/absence surveys: A case study of an emerging amphibian pathogen
    • Schmidt BR, Kéry M, Ursenbacher S, Hyman OJ, Collins JP (2013) Site occupancy models in the analysis of environmental DNA presence/absence surveys: a case study of an emerging amphibian pathogen. Method Ecol Evol 4: 646-653.
    • (2013) Method Ecol Evol , vol.4 , pp. 646-653
    • Schmidt, B.R.1    Kéry, M.2    Ursenbacher, S.3    Hyman, O.J.4    Collins, J.P.5
  • 18
    • 0000989596 scopus 로고    scopus 로고
    • Estimating site occupancy rates when detection probabilities are less than one
    • MacKenzie D, Nichols JD, Lachman GB, Droege S, Royle JA, et al. (2002) Estimating site occupancy rates when detection probabilities are less than one. Ecology 84: 2200-2207.
    • (2002) Ecology , vol.84 , pp. 2200-2207
    • MacKenzie, D.1    Nichols, J.D.2    Lachman, G.B.3    Droege, S.4    Royle, J.A.5
  • 19
    • 33646159748 scopus 로고    scopus 로고
    • Generalized site occupancy models allowing for false positive and false negative errors
    • Royle JA, Link WL (2006) Generalized site occupancy models allowing for false positive and false negative errors. Ecology 87: 835-841.
    • (2006) Ecology , vol.87 , pp. 835-841
    • Royle, J.A.1    Link, W.L.2
  • 21
    • 3242869660 scopus 로고
    • Florida fresh water fishes and conservation
    • Rivas LR (1965). Florida fresh water fishes and conservation. Q J Florida Acad Sci 28: 255-258.
    • (1965) Q J Florida Acad Sci , vol.28 , pp. 255-258
    • Rivas, L.R.1
  • 22
    • 77957361398 scopus 로고    scopus 로고
    • Salinity tolerance of the African jewelfish Hemichromis letourneuxi, a non-native cichlid in south Florida (USA)
    • Langston JN, Schofield PJ, Hill JE, Loftus WF (2010) Salinity tolerance of the African jewelfish Hemichromis letourneuxi, a non-native cichlid in south Florida (USA). Copeia 2010: 475-480.
    • (2010) Copeia , vol.2010 , pp. 475-480
    • Langston, J.N.1    Schofield, P.J.2    Hill, J.E.3    Loftus, W.F.4
  • 23
    • 37249010748 scopus 로고    scopus 로고
    • Hypoxia tolerance of two centrarchid sunfishes and an introduced cichlid from karstic Everglades wetlands of southern Florida, USA
    • sd
    • Schofield PJ, Loftus WF, Brown ME (2007) Hypoxia tolerance of two centrarchid sunfishes and an introduced cichlid from karstic Everglades wetlands of southern Florida, USA. J Fish Biol 71(sd): 87-99.
    • (2007) J Fish Biol , vol.71 , pp. 87-99
    • Schofield, P.J.1    Loftus, W.F.2    Brown, M.E.3
  • 24
    • 84856352464 scopus 로고    scopus 로고
    • Antipredator behavior and cue recognition by multiple Everglades prey to a novel cichlid predator
    • Dunlop-Hayden KL, Rehage JS (2011) Antipredator behavior and cue recognition by multiple Everglades prey to a novel cichlid predator. Behavior 148: 795-823.
    • (2011) Behavior , vol.148 , pp. 795-823
    • Dunlop-Hayden, K.L.1    Rehage, J.S.2
  • 25
    • 84861939413 scopus 로고    scopus 로고
    • Multiple predator effects and native prey responses to two non-native Everglades cichlids
    • Porter-Whitaker A, Rehage JS, Liston SE, Loftus WF (2012) Multiple predator effects and native prey responses to two non-native Everglades cichlids. Ecol Freshwat Fish 21: 375-385
    • (2012) Ecol Freshwat Fish , vol.21 , pp. 375-385
    • Porter-Whitaker, A.1    Rehage, J.S.2    Liston, S.E.3    Loftus, W.F.4
  • 26
    • 84905655039 scopus 로고    scopus 로고
    • Fish community responses to the combined effects of decreased hydroperiod and nonnative fish invasions in a karst wetland: Are Everglades solution holes sinks for native fishes?
    • Rehage JS, Linston SE, Dunker KJ, Loftus WF (2013) Fish community responses to the combined effects of decreased hydroperiod and nonnative fish invasions in a karst wetland: are Everglades solution holes sinks for native fishes? Wetlands 1-15.
    • (2013) Wetlands , pp. 1-15
    • Rehage, J.S.1    Linston, S.E.2    Dunker, K.J.3    Loftus, W.F.4
  • 27
    • 84905081965 scopus 로고    scopus 로고
    • Development of molecular markers for eDNA detection of the invasive African jewelfish (Hemichromis letourneuxi): A new tool for monitoring aquatic invasive species in National Wildlife Refuges
    • Díaz-Ferguson E, Herod J, Galvez J, Moyer G (2014) Development of molecular markers for eDNA detection of the invasive African jewelfish (Hemichromis letourneuxi): a new tool for monitoring aquatic invasive species in National Wildlife Refuges. Manag Biol Invasion 5:121-131.
    • (2014) Manag Biol Invasion , vol.5 , pp. 121-131
    • Díaz-Ferguson, E.1    Herod, J.2    Galvez, J.3    Moyer, G.4
  • 28
    • 84883276775 scopus 로고    scopus 로고
    • How many founders for a biological invasion? Predicting introduction outcomes from propagule pressure
    • Britton JR, Gozlan RE (2013) How many founders for a biological invasion? Predicting introduction outcomes from propagule pressure. Ecology 94: 2558-2566.
    • (2013) Ecology , vol.94 , pp. 2558-2566
    • Britton, J.R.1    Gozlan, R.E.2
  • 29
    • 84891297294 scopus 로고    scopus 로고
    • Propagule pressure drives establishment of introduced freshwater fish: Quantitative evidence from an irrigation network
    • Woodford DJ, Hui C, Richardson DM, Weyl OL (2013) Propagule pressure drives establishment of introduced freshwater fish: quantitative evidence from an irrigation network. Ecol Appl 23: 1926-1937.
    • (2013) Ecol Appl , vol.23 , pp. 1926-1937
    • Woodford, D.J.1    Hui, C.2    Richardson, D.M.3    Weyl, O.L.4
  • 34
    • 70449411807 scopus 로고    scopus 로고
    • The BUGS project: Evolution, critique, and future directions
    • Lunn D, Spiegelhalter D, Thomas A, Best N (2009) The BUGS project: evolution, critique, and future directions. Stat Med 28: 3049-3067.
    • (2009) Stat Med , vol.28 , pp. 3049-3067
    • Lunn, D.1    Spiegelhalter, D.2    Thomas, A.3    Best, N.4
  • 41
    • 84972492387 scopus 로고
    • Inference from iterative simulation using multiple sequences
    • Gelman A, Rubin DB (1992) Inference from iterative simulation using multiple sequences. Stat Sci 7: 457-511.
    • (1992) Stat Sci , vol.7 , pp. 457-511
    • Gelman, A.1    Rubin, D.B.2
  • 42
    • 25444484077 scopus 로고    scopus 로고
    • Posterior predictive assessment of model fitness via realized discrepancies
    • Gelman A, Meng XL, Stern H (1996) Posterior predictive assessment of model fitness via realized discrepancies. Stat Sinica 6: 733-759. (Pubitemid 127004401)
    • (1996) Statistica Sinica , vol.6 , Issue.4 , pp. 733-759
    • Gelman, A.1    Meng, X.-L.2    Stern, H.3
  • 43
    • 58249119572 scopus 로고    scopus 로고
    • Trade, transport and trouble: Managing invasive species pathways in the era of globalization
    • Hulme PE (2009) Trade, transport and trouble: managing invasive species pathways in the era of globalization. J Appl Ecol 46: 10-18.
    • (2009) J Appl Ecol , vol.46 , pp. 10-18
    • Hulme, P.E.1
  • 44
    • 18444391834 scopus 로고    scopus 로고
    • Improving inferences in population studies of rare species that are detected imperfectly
    • MacKenzie DI, Nichols JD, Sutton N, Kawanishi K, Bailey LL (2005) Improving inferences in population studies of rare species that are detected imperfectly. Ecology 86: 1101-1113. (Pubitemid 40641183)
    • (2005) Ecology , vol.86 , Issue.5 , pp. 1101-1113
    • MacKenzie, D.I.1    Nichols, J.D.2    Sutton, N.3    Kawanishi, K.4    Bailey, L.L.5
  • 45
    • 84859588806 scopus 로고    scopus 로고
    • The future of environmental DNA in ecology
    • Yoccoz NG (2012). The future of environmental DNA in ecology. Mol Ecol 21: 2031-2038.
    • (2012) Mol Ecol , vol.21 , pp. 2031-2038
    • Yoccoz, N.G.1
  • 46
    • 84890168653 scopus 로고    scopus 로고
    • Factors influencing detection of eDNA from a stream dwelling amphibian
    • Pilliod D, Goldberg C, Arkle R, Waits L (2014) Factors influencing detection of eDNA from a stream dwelling amphibian. Mol Ecol Resour 14: 109-116.
    • (2014) Mol Ecol Resour , vol.14 , pp. 109-116
    • Pilliod, D.1    Goldberg, C.2    Arkle, R.3    Waits, L.4
  • 47
    • 84893602243 scopus 로고    scopus 로고
    • Environmental conditions influence eDNA persistence in aquatic systems
    • Barnes M, Turner C, Jerde C, Renshaw M, Chadderton L, et al. (2014) Environmental conditions influence eDNA persistence in aquatic systems. Environ Sci Technol 48: 1819-1827.
    • (2014) Environ Sci Technol , vol.48 , pp. 1819-1827
    • Barnes, M.1    Turner, C.2    Jerde, C.3    Renshaw, M.4    Chadderton, L.5
  • 48
    • 0034904198 scopus 로고    scopus 로고
    • Feces in aquatic systems
    • Wotton RS, Malmqvist B (2001) Feces in aquatic systems. Bioscience 51: 537-544.
    • (2001) Bioscience , vol.51 , pp. 537-544
    • Wotton, R.S.1    Malmqvist, B.2
  • 49
  • 50
    • 84856411137 scopus 로고    scopus 로고
    • Production of the endangered Rio Grande silvery minnow, Hybognathus amarus, in the conservation rearing facility at the Los Lunas Silvery Minnow Refugium
    • Hutson AM, Toya LA, Tave D (2012) Production of the endangered Rio Grande silvery minnow, Hybognathus amarus, in the conservation rearing facility at the Los Lunas Silvery Minnow Refugium. J. World Aquacult Soc 43: 84-90.
    • (2012) J. World Aquacult Soc , vol.43 , pp. 84-90
    • Hutson, A.M.1    Toya, L.A.2    Tave, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.