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Volumn 14, Issue 1, 2014, Pages

Comparative mapping in the Poaceae family reveals translocations in the complex polyploid genome of sugarcane

Author keywords

Orthology; Poaceae; Saccharum; SNP markers; Synteny; Translocations

Indexed keywords

ARTICLE; CHROMOSOME MAP; COMPARATIVE STUDY; EVOLUTION; GENE TRANSLOCATION; GENETIC LINKAGE; GENETIC MARKER; GENETICS; MAIZE; PLANT GENOME; POLYPLOIDY; SORGHUM; SUGARCANE; SYNTENY;

EID: 84904851854     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/s12870-014-0190-x     Document Type: Article
Times cited : (29)

References (50)
  • 1
    • 0011135602 scopus 로고
    • Solid biofuels: fuel crops. In Crops for Industry and Energy 1994 CAS Report. Edited by Carruthers SP, Miller PA, Vaughan CMA. Centre for Agricultural Strategy, University of Reading
    • Carruthers SP: Solid biofuels: fuel crops. In Crops for Industry and Energy 1994 CAS Report. Edited by Carruthers SP, Miller PA, Vaughan CMA. Centre for Agricultural Strategy, University of Reading; 1994:168-180.
    • (1994) , pp. 168-180
    • Carruthers, S.P.1
  • 2
    • 0036008768 scopus 로고    scopus 로고
    • Sugarcane genomics: depicting the complex genome of an important tropical crop
    • Grivet L, Arruda P: Sugarcane genomics: depicting the complex genome of an important tropical crop. Curr Opin Plant Biol 2001, 5:122-127.
    • (2001) Curr Opin Plant Biol , vol.5 , pp. 122-127
    • Grivet, L.1    Arruda, P.2
  • 3
    • 0031873542 scopus 로고    scopus 로고
    • Determination of basic chromosome numbers in the genus Saccharum by physical mapping of ribosomal RNA genes
    • D'Hont A, Ison D, Alix K, Roux C, Glaszmann JC: Determination of basic chromosome numbers in the genus Saccharum by physical mapping of ribosomal RNA genes. Genome 1998, 41:221-225.
    • (1998) Genome , vol.41 , pp. 221-225
    • D'Hont, A.1    Ison, D.2    Alix, K.3    Roux, C.4    Glaszmann, J.C.5
  • 4
    • 0029670023 scopus 로고    scopus 로고
    • Characterisation of the double genome structure of modern sugarcane cultivars (Saccharum spp.) by molecular cytogenetics
    • D'Hont A, Grivet L, Feldmann P, Rao PS, Berding N, Glauszmann JC: Characterisation of the double genome structure of modern sugarcane cultivars (Saccharum spp.) by molecular cytogenetics. Mol Gen Genet 1996, 250:404-413.
    • (1996) Mol Gen Genet , vol.250 , pp. 404-413
    • D'Hont, A.1    Grivet, L.2    Feldmann, P.3    Rao, P.S.4    Berding, N.5    Glauszmann, J.C.6
  • 5
    • 84989131705 scopus 로고
    • Cytogenetics. In Sugarcane improvement through breeding. Edited by Heinz DJ. New York: Elsevier Press
    • Sreenivasan TV, Ahloowalia BS, Heinz DJ: Cytogenetics. In Sugarcane improvement through breeding. Edited by Heinz DJ. New York: Elsevier Press; 1987:211-253.
    • (1987) , pp. 211-253
    • Sreenivasan, T.V.1    Ahloowalia, B.S.2    Heinz, D.J.3
  • 6
    • 0141746874 scopus 로고
    • Chromosome transmission and meiotic stability of sugarcane (Saccharum spp.) hybrid derivatives
    • Burner DM, Legendre BL: Chromosome transmission and meiotic stability of sugarcane ( Saccharum spp.) hybrid derivatives. Crop Sci 1993, 33:600-606.
    • (1993) Crop Sci , vol.33 , pp. 600-606
    • Burner, D.M.1    Legendre, B.L.2
  • 7
    • 33750440816 scopus 로고    scopus 로고
    • AFLP analysis of genetic diversity within Saccharum officinarum and comparison with sugarcane cultivars
    • Aitken KS, Li JC, Jackson P, Piperidis G, McIntyre CL: AFLP analysis of genetic diversity within Saccharum officinarum and comparison with sugarcane cultivars. Aust J Agric Res 2006, 57:1167-1184.
    • (2006) Aust J Agric Res , vol.57 , pp. 1167-1184
    • Aitken, K.S.1    Li, J.C.2    Jackson, P.3    Piperidis, G.4    McIntyre, C.L.5
  • 11
    • 0029899579 scopus 로고    scopus 로고
    • RFLP mapping in cultivated sugarcane (Saccharum spp.): genome organisation in a highly polyploid and aneuploid interspecific hybrid
    • Grivet L, D'Hont A, Roques D, Feldmann P, Lanaud C, Glaszmann JC: RFLP mapping in cultivated sugarcane ( Saccharum spp.): genome organisation in a highly polyploid and aneuploid interspecific hybrid. Genetics 1996, 142:987-1000.
    • (1996) Genetics , vol.142 , pp. 987-1000
    • Grivet, L.1    D'Hont, A.2    Roques, D.3    Feldmann, P.4    Lanaud, C.5    Glaszmann, J.C.6
  • 13
    • 0036433901 scopus 로고    scopus 로고
    • Comparative analysis of QTLs affecting plant height and flowering among closely-related diploid and polyploidy genomes
    • Ming R, Del Monte TA, Hernandez E, Moore PH, Irvine JE, Paterson AH: Comparative analysis of QTLs affecting plant height and flowering among closely-related diploid and polyploidy genomes. Genome 2002, 45:794-803.
    • (2002) Genome , vol.45 , pp. 794-803
    • Ming, R.1    Monte, T.A.2    Hernandez, E.3    Moore, P.H.4    Irvine, J.E.5    Paterson, A.H.6
  • 15
    • 17444383490 scopus 로고    scopus 로고
    • A combination of AFLP and SSR markers provides extensive map coverage and identification of homo(eo)logous linkage groups in a sugarcane cultivar
    • Aitken KS, Jackson PA, McIntyre CL: A combination of AFLP and SSR markers provides extensive map coverage and identification of homo(eo)logous linkage groups in a sugarcane cultivar. Theor Appl Genet 2005, 110:789-801.
    • (2005) Theor Appl Genet , vol.110 , pp. 789-801
    • Aitken, K.S.1    Jackson, P.A.2    McIntyre, C.L.3
  • 16
    • 79958180137 scopus 로고    scopus 로고
    • Genetic analysis of the sugarcane (Saccharum spp.) cultivar 'LCP 85-384'. I. Linkage mapping using AFLP, SSR and TRAP markers
    • Andru S, Yoong-Bao P, Thongthawee S, Burner DM, Kimbeng CA: Genetic analysis of the sugarcane (Saccharum spp.) cultivar 'LCP 85-384'. I. Linkage mapping using AFLP, SSR and TRAP markers. Theor Appl Genet 2011, 123:77-93.
    • (2011) Theor Appl Genet , vol.123 , pp. 77-93
    • Andru, S.1    Yoong-Bao, P.2    Thongthawee, S.3    Burner, D.M.4    Kimbeng, C.A.5
  • 20
    • 0035866187 scopus 로고    scopus 로고
    • Diversity arrays: a solid state technology for sequence information independent genotyping
    • Jaccoud D, Peng K, Feinstein D, Kilian A: Diversity arrays: a solid state technology for sequence information independent genotyping. Nucleic Acids Res 2001, 29:e25.
    • (2001) Nucleic Acids Res , vol.29 , pp. e25
    • Jaccoud, D.1    Peng, K.2    Feinstein, D.3    Kilian, A.4
  • 24
    • 84899479461 scopus 로고    scopus 로고
    • A comprehensive genetic map of sugarcane that provides enhanced map coverage and integrates high throughput Diversity Array Technology (DArT) markers
    • Aitken KS, McNeil MD, Hermann S, Bundock PC, Kilian A, Heller-Usznska K, Henry RJ, Li J: A comprehensive genetic map of sugarcane that provides enhanced map coverage and integrates high throughput Diversity Array Technology (DArT) markers. BMC Genomics 2014, 15:152.
    • (2014) BMC Genomics , vol.15 , pp. 152
    • Aitken, K.S.1    McNeil, M.D.2    Hermann, S.3    Bundock, P.C.4    Kilian, A.5    Heller-Usznska, K.6    Henry, R.J.7    Li, J.8
  • 27
    • 34248561466 scopus 로고    scopus 로고
    • Orthologous comparison in a gene-rich region among grasses reveals stability in the sugarcane polyploidy genome
    • Jannoo N, Grivet L, Chantret N, Garsmeur O, Glaszmann JC, Arruda P, D'Hont A: Orthologous comparison in a gene-rich region among grasses reveals stability in the sugarcane polyploidy genome. Plant J 2007, 50:574-585.
    • (2007) Plant J , vol.50 , pp. 574-585
    • Jannoo, N.1    Grivet, L.2    Chantret, N.3    Garsmeur, O.4    Glaszmann, J.C.5    Arruda, P.6    D'Hont, A.7
  • 29
    • 70450189075 scopus 로고    scopus 로고
    • Improved criteria and comparative genomics tool provide new insights into grass paleogenomics
    • Salse J, Abrouk M, Murat F, Quraishi UM, Feuillet C: Improved criteria and comparative genomics tool provide new insights into grass paleogenomics. Brief Bioinform 2009, 2009(10):619-630.
    • (2009) Brief Bioinform , vol.2009 , Issue.10 , pp. 619-630
    • Salse, J.1    Abrouk, M.2    Murat, F.3    Quraishi, U.M.4    Feuillet, C.5
  • 30
    • 77953686606 scopus 로고    scopus 로고
    • Molecular cytoogenetic investigation of chromsome composition and transmission in sugarcane
    • Piperidis G, Piperidis N, D'Hont A: Molecular cytoogenetic investigation of chromsome composition and transmission in sugarcane. Mol Gen Genomics 2010, 284:65-73.
    • (2010) Mol Gen Genomics , vol.284 , pp. 65-73
    • Piperidis, G.1    Piperidis, N.2    D'Hont, A.3
  • 35
    • 66449122207 scopus 로고    scopus 로고
    • Comparative inference of illegitimate recombination between rice and sorghum duplicated genes produced by polyploidization
    • Wang X, Tang H, Bowers JE, Paterson AH: Comparative inference of illegitimate recombination between rice and sorghum duplicated genes produced by polyploidization. Genome Res 2009, 19:1026-1032.
    • (2009) Genome Res , vol.19 , pp. 1026-1032
    • Wang, X.1    Tang, H.2    Bowers, J.E.3    Paterson, A.H.4
  • 37
    • 78649312312 scopus 로고    scopus 로고
    • Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution
    • Murat F, Xu J-H, Tannier E, Abrouk M, Guilhot N, Pont C, Messing J, Salse J: Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution. Genome Res 2010, 2010(20):1545-1557.
    • (2010) Genome Res , vol.2010 , Issue.20 , pp. 1545-1557
    • Murat, F.1    Xu, J.-H.2    Tannier, E.3    Abrouk, M.4    Guilhot, N.5    Pont, C.6    Messing, J.7    Salse, J.8
  • 38
    • 79956330054 scopus 로고    scopus 로고
    • Interpretation of karyotype evolution should consider chromsome structural constraints
    • Schubert I, Lysak MA: Interpretation of karyotype evolution should consider chromsome structural constraints. Trends Genet 2011, 27:207-216.
    • (2011) Trends Genet , vol.27 , pp. 207-216
    • Schubert, I.1    Lysak, M.A.2
  • 39
    • 85007967487 scopus 로고
    • Studies in Saccharum spontaneum. Distribution and geographical association of chromosome numbers
    • Panje R, Babu C: Studies in Saccharum spontaneum. Distribution and geographical association of chromosome numbers. Cytologia 1960, 25:152-172.
    • (1960) Cytologia , vol.25 , pp. 152-172
    • Panje, R.1    Babu, C.2
  • 41
    • 35548966719 scopus 로고    scopus 로고
    • Polyploidy: doubling up for evolutionary success
    • Hegarty M, Hiscock S: Polyploidy: doubling up for evolutionary success. Curr Biol 2007, 2007(17):927-929.
    • (2007) Curr Biol , vol.2007 , Issue.17 , pp. 927-929
    • Hegarty, M.1    Hiscock, S.2
  • 42
    • 70349325524 scopus 로고    scopus 로고
    • The evolutionary significance of ancient genome duplications
    • Van de Peer Y, Maere S, Meyer A: The evolutionary significance of ancient genome duplications. Nat Rev Genet 2009, 10:725-732.
    • (2009) Nat Rev Genet , vol.10 , pp. 725-732
    • Peer, Y.1    Maere, S.2    Meyer, A.3
  • 48
    • 64749112341 scopus 로고    scopus 로고
    • Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploidy plant species using 454 sequencing
    • Bundock PC, Eilot FG, Ablett G, Benson AD, Casu RE, Aitken KS, Henry RJ: Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploidy plant species using 454 sequencing. Plant Biotechnol J 2009, 2009(7):347-354.
    • (2009) Plant Biotechnol J , vol.2009 , Issue.7 , pp. 347-354
    • Bundock, P.C.1    Eilot, F.G.2    Ablett, G.3    Benson, A.D.4    Casu, R.E.5    Aitken, K.S.6    Henry, R.J.7
  • 50
    • 84947039295 scopus 로고    scopus 로고
    • JoinMao 4, Software for the calculation of genetic linkage maps in experimental populations. Wageningen, Netherlands: Kyazma BV
    • Van Ooijen JW: JoinMao 4, Software for the calculation of genetic linkage maps in experimental populations. Wageningen, Netherlands: Kyazma BV; 2006.
    • (2006)
    • Ooijen, J.W.1


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