-
1
-
-
0030861438
-
The SWISS-PROT protein sequence data bank and its supplement TrEMBL
-
Bairoch,A. and Apweiler,R. (1997) The SWISS-PROT protein sequence data bank and its supplement TrEMBL. Nucleic Acids Res., 25, 31-36.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 31-36
-
-
Bairoch, A.1
Apweiler, R.2
-
3
-
-
0142184341
-
Global analysis of protein localization in budding yeast
-
Huh,W.K., Falvo,J.V., Gerke,L.C., Carroll,A.S., Howson,R.W., Weissman,J.S. and O'Shea,E.K. (2003) Global analysis of protein localization in budding yeast. Nature, 425, 686-691.
-
(2003)
Nature
, vol.425
, pp. 686-691
-
-
Huh, W.K.1
Falvo, J.V.2
Gerke, L.C.3
Carroll, A.S.4
Howson, R.W.5
Weissman, J.S.6
O'shea, E.K.7
-
4
-
-
0343938895
-
Bridging the gap between sequence and function
-
Koonin,E.V. (2000) Bridging the gap between sequence and function. Trends Genet., 16, 16.
-
(2000)
Trends Genet.
, vol.16
, pp. 16
-
-
Koonin, E.V.1
-
5
-
-
84874663959
-
A large-scale evaluation of computational protein function prediction
-
Radivojac,P., Clark,W.T., Oron,T.R., Schnoes,A.M., Wittkop,T., Sokolov,A., Graim,K., Funk,C., Verspoor,K., Ben-Hur,A. et al. (2013) A large-scale evaluation of computational protein function prediction. Nat. Methods.10, 221-227.
-
(2013)
Nat. Methods.
, vol.10
, pp. 221-227
-
-
Radivojac, P.1
Clark, W.T.2
Oron, T.R.3
Schnoes, A.M.4
Wittkop, T.5
Sokolov, A.6
Graim, K.7
Funk, C.8
Verspoor, K.9
Ben-Hur, A.10
-
6
-
-
36448988254
-
Predicting protein function from sequence and structure.Nat
-
Lee,D., Redfern,O. and Orengo,C. (2007) Predicting protein function from sequence and structure.Nat. Rev. Mol. Cell Biol., 8, 995-1005.
-
(2007)
Rev. Mol. Cell Biol.
, vol.8
, pp. 995-1005
-
-
Lee, D.1
Redfern, O.2
Orengo, C.3
-
7
-
-
33746218840
-
Prediction of protein subcellular localization
-
Yu,C.S., Chen,Y.C., Lu,C.H. and Hwang,J.K. (2006) Prediction of protein subcellular localization. Proteins, 64, 643-651.
-
(2006)
Proteins
, vol.64
, pp. 643-651
-
-
Yu, C.S.1
Chen, Y.C.2
Lu, C.H.3
Hwang, J.K.4
-
8
-
-
34547560275
-
WoLF PSORT: Protein localization predictor
-
Horton,P., Park,K.J., Obayashi,T., Fujita,N., Harada,H., Adams-Collier,C.J. and Nakai,K. (2007) WoLF PSORT: protein localization predictor. Nucleic Acids Res., 35, W585-W587.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Horton, P.1
Park, K.J.2
Obayashi, T.3
Fujita, N.4
Harada, H.5
Adams-Collier, C.J.6
Nakai, K.7
-
9
-
-
77954274687
-
YLoc - An interpretable web server for predicting subcellular localization
-
Briesemeister,S., Rahnenfuhrer,J. and Kohlbacher,O. (2010) YLoc-an interpretable web server for predicting subcellular localization. Nucleic Acids Res., 38, W497-W502.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Briesemeister, S.1
Rahnenfuhrer, J.2
Kohlbacher, O.3
-
10
-
-
77954199597
-
PSORTb 3.0: Improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
-
Yu,N.Y., Wagner,J.R., Laird,M.R., Melli,G., Rey,S., Lo,R., Dao,P., Sahinalp,S.C., Ester,M., Foster,L.J. et al. (2010) PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinformatics, 26, 1608-1615.
-
(2010)
Bioinformatics
, vol.26
, pp. 1608-1615
-
-
Yu, N.Y.1
Wagner, J.R.2
Laird, M.R.3
Melli, G.4
Rey, S.5
Lo, R.6
Dao, P.7
Sahinalp, S.C.8
Ester, M.9
Foster, L.J.10
-
11
-
-
78449279166
-
Prediction of subcellular locations of proteins: Where to proceed?
-
Imai,K. and Nakai,K. (2010) Prediction of subcellular locations of proteins: where to proceed? Proteomics, 10, 3970-3983.
-
(2010)
Proteomics
, vol.10
, pp. 3970-3983
-
-
Imai, K.1
Nakai, K.2
-
12
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
13
-
-
84866461910
-
LocTree2 predicts localization for all domains of life
-
Goldberg,T., Hamp,T. and Rost,B. (2012) LocTree2 predicts localization for all domains of life. Bioinformatics, 28, i458-i465.
-
(2012)
Bioinformatics
, vol.28
-
-
Goldberg, T.1
Hamp, T.2
Rost, B.3
-
14
-
-
0003880161
-
-
4th edn. Garland Science, New York
-
Alberts,B.J.A., Lewis,J., Raff,M., Roberts,K. and Walter,P. (2002) Molecular Biology of the Cell, 4th edn. Garland Science, New York
-
(2002)
Molecular Biology of the Cell
-
-
Alberts, B.J.A.1
Lewis, J.2
Raff, M.3
Roberts, K.4
Walter, P.5
-
15
-
-
84880799336
-
SCL-Epred: A generalised de novo eukaryotic protein subcellular localisation predictor
-
Mooney,C., Cessieux,A., Shields,D.C. and Pollastri,G. (2013) SCL-Epred: a generalised de novo eukaryotic protein subcellular localisation predictor. Amino Acids, 45, 291-299.
-
(2013)
Amino Acids
, vol.45
, pp. 291-299
-
-
Mooney, C.1
Cessieux, A.2
Shields, D.C.3
Pollastri, G.4
-
16
-
-
14044266328
-
Profile-based string kernels for remote homology detection and motif extraction
-
CSB. Stanford, California, USA
-
Kuang,R., Ie,E., Wang,K., Siddiqi,M., Freund,Y. and Leslie,C. (2004) Profile-based string kernels for remote homology detection and motif extraction. Proceedings/IEEE Computational Systems Bioinformatics Conference, CSB. Stanford, California, USA, pp. 152-160.
-
(2004)
Proceedings/IEEE Computational Systems Bioinformatics Conference
, pp. 152-160
-
-
Kuang, R.1
Ie, E.2
Wang, K.3
Siddiqi, M.4
Freund, Y.5
Leslie, C.6
-
17
-
-
84879137048
-
Accelerating the original profile kernel
-
Hamp,T., Goldberg,T. and Rost,B. (2013) Accelerating the original profile kernel. PLoS One, 8, e68459.
-
(2013)
PLoS One
, vol.8
-
-
Hamp, T.1
Goldberg, T.2
Rost, B.3
-
18
-
-
84862192725
-
The UniProt-GO Annotation database in 2011
-
Dimmer,E.C., Huntley,R.P., Alam-Faruque,Y., Sawford,T., O'Donovan,C., Martin,M.J., Bely,B., Browne,P., Mun Chan,W., Eberhardt,R. et al. (2012) The UniProt-GO Annotation database in 2011. Nucleic Acids Res., 40, D565-D570.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Dimmer, E.C.1
Huntley, R.P.2
Alam-Faruque, Y.3
Sawford, T.4
O'donovan, C.5
Martin, M.J.6
Bely, B.7
Browne, P.8
Mun Chan, W.9
Eberhardt, R.10
-
19
-
-
84881507563
-
Cloud prediction of protein structure and function with PredictProtein for Debian
-
Kajan,L., Yachdav,G., Vicedo,E., Steinegger,M., Mirdita,M., Angermuller,C., Bohm,A., Domke,S., Ertl,J., Mertes,C. et al. (2013) Cloud prediction of protein structure and function with PredictProtein for Debian. BioMed. Res. Int., 2013, 398968.
-
(2013)
BioMed. Res. Int.
, vol.2013
, pp. 398968
-
-
Kajan, L.1
Yachdav, G.2
Vicedo, E.3
Steinegger, M.4
Mirdita, M.5
Angermuller, C.6
Bohm, A.7
Domke, S.8
Ertl, J.9
Mertes, C.10
-
20
-
-
84904418029
-
PredictProtein - An open resource for online prediction of protein structural and functional features
-
doi:10.1093/nar/gku366
-
Yachdav,G., Kloppmann,E., Kajan,L., Hecht,M., Goldberg,T., Hamp,T., Hönigschmid,P., Schafferhans,A., Roos,M., Bernhofer,M. et al. (2014) PredictProtein - an open resource for online prediction of protein structural and functional features. Nucleic Acids Res., doi:10.1093/nar/gku366.
-
(2014)
Nucleic Acids Res.
-
-
Yachdav, G.1
Kloppmann, E.2
Kajan, L.3
Hecht, M.4
Goldberg, T.5
Hamp, T.6
Hönigschmid, P.7
Schafferhans, A.8
Roos, M.9
Bernhofer, M.10
-
21
-
-
0026030641
-
Database of homology-derived protein structures and the structural meaning of sequence alignment
-
Sander,C. and Schneider,R. (1991) Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins, 9, 56-68.
-
(1991)
Proteins
, vol.9
, pp. 56-68
-
-
Sander, C.1
Schneider, R.2
-
22
-
-
0032962457
-
Twilight zone of protein sequence alignments
-
Rost,B. (1999) Twilight zone of protein sequence alignments. Protein Eng., 12, 85-94.
-
(1999)
Protein Eng.
, vol.12
, pp. 85-94
-
-
Rost, B.1
-
23
-
-
0043122933
-
UniqueProt: Creating representative protein sequence sets
-
Mika,S. and Rost,B. (2003) UniqueProt: creating representative protein sequence sets. Nucleic Acids Res., 31, 3789-3791.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3789-3791
-
-
Mika, S.1
Rost, B.2
-
24
-
-
0036308741
-
Enzyme function less conserved than anticipated
-
Rost,B. (2002) Enzyme function less conserved than anticipated. J. Mol. Biol., 318, 595-608.
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 595-608
-
-
Rost, B.1
-
25
-
-
0036467068
-
Alignments grow, secondary structure prediction improves
-
Przybylski,D. and Rost,B. (2002) Alignments grow, secondary structure prediction improves. Proteins, 46, 197-205.
-
(2002)
Proteins
, vol.46
, pp. 197-205
-
-
Przybylski, D.1
Rost, B.2
-
26
-
-
0029889221
-
Local alignment statistics
-
Altschul,S.F. and Gish,W. (1996) Local alignment statistics. Methods Enzymol., 266, 460-480.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 460-480
-
-
Altschul, S.F.1
Gish, W.2
-
27
-
-
0033954256
-
The protein data bank
-
Berman,H.M.,Westbrook,J., Feng,Z., Gilliland,G., Bhat,T.N., Weissig,H., Shindyalov,I.N. and Bourne,P.E. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
|