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Volumn 42, Issue W1, 2014, Pages

LocTree3 prediction of localization

(34)  Goldberg, Tatyana a   Hecht, Maximilian a   Hamp, Tobias a   Karl, Timothy a   Yachdav, Guy a,b   Ahmed, Nadeem a   Altermann, Uwe a   Angerer, Philipp a   Ansorge, Sonja a   Balasz, Kinga a   Bernhofer, Michael a   Betz, Alexander a   Cizmadija, Laura a   Do, Kieu Trinh a   Gerke, Julia a   Greil, Robert a   Joerdens, Vadim a   Hastreiter, Maximilian a   Hembach, Katharina a   Herzog, Max a   more..


Author keywords

[No Author keywords available]

Indexed keywords

PROTEOME;

EID: 84904823005     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gku396     Document Type: Article
Times cited : (240)

References (27)
  • 1
    • 0030861438 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence data bank and its supplement TrEMBL
    • Bairoch,A. and Apweiler,R. (1997) The SWISS-PROT protein sequence data bank and its supplement TrEMBL. Nucleic Acids Res., 25, 31-36.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 31-36
    • Bairoch, A.1    Apweiler, R.2
  • 4
    • 0343938895 scopus 로고    scopus 로고
    • Bridging the gap between sequence and function
    • Koonin,E.V. (2000) Bridging the gap between sequence and function. Trends Genet., 16, 16.
    • (2000) Trends Genet. , vol.16 , pp. 16
    • Koonin, E.V.1
  • 6
    • 36448988254 scopus 로고    scopus 로고
    • Predicting protein function from sequence and structure.Nat
    • Lee,D., Redfern,O. and Orengo,C. (2007) Predicting protein function from sequence and structure.Nat. Rev. Mol. Cell Biol., 8, 995-1005.
    • (2007) Rev. Mol. Cell Biol. , vol.8 , pp. 995-1005
    • Lee, D.1    Redfern, O.2    Orengo, C.3
  • 7
    • 33746218840 scopus 로고    scopus 로고
    • Prediction of protein subcellular localization
    • Yu,C.S., Chen,Y.C., Lu,C.H. and Hwang,J.K. (2006) Prediction of protein subcellular localization. Proteins, 64, 643-651.
    • (2006) Proteins , vol.64 , pp. 643-651
    • Yu, C.S.1    Chen, Y.C.2    Lu, C.H.3    Hwang, J.K.4
  • 9
    • 77954274687 scopus 로고    scopus 로고
    • YLoc - An interpretable web server for predicting subcellular localization
    • Briesemeister,S., Rahnenfuhrer,J. and Kohlbacher,O. (2010) YLoc-an interpretable web server for predicting subcellular localization. Nucleic Acids Res., 38, W497-W502.
    • (2010) Nucleic Acids Res. , vol.38
    • Briesemeister, S.1    Rahnenfuhrer, J.2    Kohlbacher, O.3
  • 10
    • 77954199597 scopus 로고    scopus 로고
    • PSORTb 3.0: Improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
    • Yu,N.Y., Wagner,J.R., Laird,M.R., Melli,G., Rey,S., Lo,R., Dao,P., Sahinalp,S.C., Ester,M., Foster,L.J. et al. (2010) PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinformatics, 26, 1608-1615.
    • (2010) Bioinformatics , vol.26 , pp. 1608-1615
    • Yu, N.Y.1    Wagner, J.R.2    Laird, M.R.3    Melli, G.4    Rey, S.5    Lo, R.6    Dao, P.7    Sahinalp, S.C.8    Ester, M.9    Foster, L.J.10
  • 11
    • 78449279166 scopus 로고    scopus 로고
    • Prediction of subcellular locations of proteins: Where to proceed?
    • Imai,K. and Nakai,K. (2010) Prediction of subcellular locations of proteins: where to proceed? Proteomics, 10, 3970-3983.
    • (2010) Proteomics , vol.10 , pp. 3970-3983
    • Imai, K.1    Nakai, K.2
  • 13
    • 84866461910 scopus 로고    scopus 로고
    • LocTree2 predicts localization for all domains of life
    • Goldberg,T., Hamp,T. and Rost,B. (2012) LocTree2 predicts localization for all domains of life. Bioinformatics, 28, i458-i465.
    • (2012) Bioinformatics , vol.28
    • Goldberg, T.1    Hamp, T.2    Rost, B.3
  • 15
    • 84880799336 scopus 로고    scopus 로고
    • SCL-Epred: A generalised de novo eukaryotic protein subcellular localisation predictor
    • Mooney,C., Cessieux,A., Shields,D.C. and Pollastri,G. (2013) SCL-Epred: a generalised de novo eukaryotic protein subcellular localisation predictor. Amino Acids, 45, 291-299.
    • (2013) Amino Acids , vol.45 , pp. 291-299
    • Mooney, C.1    Cessieux, A.2    Shields, D.C.3    Pollastri, G.4
  • 17
    • 84879137048 scopus 로고    scopus 로고
    • Accelerating the original profile kernel
    • Hamp,T., Goldberg,T. and Rost,B. (2013) Accelerating the original profile kernel. PLoS One, 8, e68459.
    • (2013) PLoS One , vol.8
    • Hamp, T.1    Goldberg, T.2    Rost, B.3
  • 21
    • 0026030641 scopus 로고
    • Database of homology-derived protein structures and the structural meaning of sequence alignment
    • Sander,C. and Schneider,R. (1991) Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins, 9, 56-68.
    • (1991) Proteins , vol.9 , pp. 56-68
    • Sander, C.1    Schneider, R.2
  • 22
    • 0032962457 scopus 로고    scopus 로고
    • Twilight zone of protein sequence alignments
    • Rost,B. (1999) Twilight zone of protein sequence alignments. Protein Eng., 12, 85-94.
    • (1999) Protein Eng. , vol.12 , pp. 85-94
    • Rost, B.1
  • 23
    • 0043122933 scopus 로고    scopus 로고
    • UniqueProt: Creating representative protein sequence sets
    • Mika,S. and Rost,B. (2003) UniqueProt: creating representative protein sequence sets. Nucleic Acids Res., 31, 3789-3791.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3789-3791
    • Mika, S.1    Rost, B.2
  • 24
    • 0036308741 scopus 로고    scopus 로고
    • Enzyme function less conserved than anticipated
    • Rost,B. (2002) Enzyme function less conserved than anticipated. J. Mol. Biol., 318, 595-608.
    • (2002) J. Mol. Biol. , vol.318 , pp. 595-608
    • Rost, B.1
  • 25
    • 0036467068 scopus 로고    scopus 로고
    • Alignments grow, secondary structure prediction improves
    • Przybylski,D. and Rost,B. (2002) Alignments grow, secondary structure prediction improves. Proteins, 46, 197-205.
    • (2002) Proteins , vol.46 , pp. 197-205
    • Przybylski, D.1    Rost, B.2
  • 26
    • 0029889221 scopus 로고    scopus 로고
    • Local alignment statistics
    • Altschul,S.F. and Gish,W. (1996) Local alignment statistics. Methods Enzymol., 266, 460-480.
    • (1996) Methods Enzymol. , vol.266 , pp. 460-480
    • Altschul, S.F.1    Gish, W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.