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Volumn 8, Issue 2, 2014, Pages 622-632

A Genome-Scale Resource for the Functional Characterization of Arabidopsis Transcription Factors

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR CIRCADIAN CLOCK ASSOCIATED 1; UNCLASSIFIED DRUG; ARABIDOPSIS PROTEIN; CCA1 PROTEIN, ARABIDOPSIS;

EID: 84904819035     PISSN: None     EISSN: 22111247     Source Type: Journal    
DOI: 10.1016/j.celrep.2014.06.033     Document Type: Article
Times cited : (144)

References (53)
  • 1
    • 84857780876 scopus 로고    scopus 로고
    • Evidence for network evolution in an Arabidopsis interactome map
    • Arabidopsis Interactome Mapping Consortium
    • Evidence for network evolution in an Arabidopsis interactome map. Science 2011, 333:601-607. Arabidopsis Interactome Mapping Consortium.
    • (2011) Science , vol.333 , pp. 601-607
  • 2
    • 17644397256 scopus 로고    scopus 로고
    • Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards?
    • Arnosti D.N., Kulkarni M.M. Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards?. J.Cell. Biochem. 2005, 94:890-898.
    • (2005) J.Cell. Biochem. , vol.94 , pp. 890-898
    • Arnosti, D.N.1    Kulkarni, M.M.2
  • 4
    • 84870724279 scopus 로고    scopus 로고
    • Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks
    • Bassel G.W., Gaudinier A., Brady S.M., Hennig L., Rhee S.Y., De Smet I. Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks. Plant Cell 2012, 24:3859-3875.
    • (2012) Plant Cell , vol.24 , pp. 3859-3875
    • Bassel, G.W.1    Gaudinier, A.2    Brady, S.M.3    Hennig, L.4    Rhee, S.Y.5    De Smet, I.6
  • 5
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • ENCODE Project Consortium
    • Bernstein B.E., Birney E., Dunham I., Green E.D., Gunter C., Snyder M. An integrated encyclopedia of DNA elements in the human genome. Nature 2012, 489:57-74. ENCODE Project Consortium.
    • (2012) Nature , vol.489 , pp. 57-74
    • Bernstein, B.E.1    Birney, E.2    Dunham, I.3    Green, E.D.4    Gunter, C.5    Snyder, M.6
  • 6
    • 79959595405 scopus 로고    scopus 로고
    • Speeding cis-trans regulation discovery by phylogenomic analyses coupled with screenings of an arrayed library of Arabidopsis transcription factors
    • Castrillo G., Turck F., Leveugle M., Lecharny A., Carbonero P., Coupland G., Paz-Ares J., Oñate-Sánchez L. Speeding cis-trans regulation discovery by phylogenomic analyses coupled with screenings of an arrayed library of Arabidopsis transcription factors. PLoS ONE 2011, 6:e21524.
    • (2011) PLoS ONE , vol.6
    • Castrillo, G.1    Turck, F.2    Leveugle, M.3    Lecharny, A.4    Carbonero, P.5    Coupland, G.6    Paz-Ares, J.7    Oñate-Sánchez, L.8
  • 9
    • 7444267933 scopus 로고    scopus 로고
    • A gateway-compatible yeast one-hybrid system
    • Deplancke B., Dupuy D., Vidal M., Walhout A.J. A gateway-compatible yeast one-hybrid system. Genome Res. 2004, 14(10B):2093-2101.
    • (2004) Genome Res. , vol.14 , Issue.10 B , pp. 2093-2101
    • Deplancke, B.1    Dupuy, D.2    Vidal, M.3    Walhout, A.J.4
  • 11
    • 34547147926 scopus 로고    scopus 로고
    • Analysis of transcriptional activation at a distance in Saccharomyces cerevisiae
    • Dobi K.C., Winston F. Analysis of transcriptional activation at a distance in Saccharomyces cerevisiae. Mol. Cell. Biol. 2007, 27:5575-5586.
    • (2007) Mol. Cell. Biol. , vol.27 , pp. 5575-5586
    • Dobi, K.C.1    Winston, F.2
  • 15
    • 84876955991 scopus 로고    scopus 로고
    • Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape
    • Gordân R., Shen N., Dror I., Zhou T., Horton J., Rohs R., Bulyk M.L. Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape. Cell Rep 2013, 3:1093-1104.
    • (2013) Cell Rep , vol.3 , pp. 1093-1104
    • Gordân, R.1    Shen, N.2    Dror, I.3    Zhou, T.4    Horton, J.5    Rohs, R.6    Bulyk, M.L.7
  • 16
    • 19544382556 scopus 로고    scopus 로고
    • DATF: a database of Arabidopsis transcription factors
    • Guo A., He K., Liu D., Bai S., Gu X., Wei L., Luo J. DATF: a database of Arabidopsis transcription factors. Bioinformatics 2005, 21:2568-2569.
    • (2005) Bioinformatics , vol.21 , pp. 2568-2569
    • Guo, A.1    He, K.2    Liu, D.3    Bai, S.4    Gu, X.5    Wei, L.6    Luo, J.7
  • 17
    • 84886953405 scopus 로고    scopus 로고
    • Photosynthetic entrainment of the Arabidopsis thaliana circadian clock
    • Haydon M.J., Mielczarek O., Robertson F.C., Hubbard K.E., Webb A.A. Photosynthetic entrainment of the Arabidopsis thaliana circadian clock. Nature 2013, 502:689-692.
    • (2013) Nature , vol.502 , pp. 689-692
    • Haydon, M.J.1    Mielczarek, O.2    Robertson, F.C.3    Hubbard, K.E.4    Webb, A.A.5
  • 19
    • 84873257641 scopus 로고    scopus 로고
    • Reciprocal interaction of the circadian clock with the iron homeostasis network in Arabidopsis
    • Hong S., Kim S.A., Guerinot M.L., McClung C.R. Reciprocal interaction of the circadian clock with the iron homeostasis network in Arabidopsis. Plant Physiol. 2013, 161:893-903.
    • (2013) Plant Physiol. , vol.161 , pp. 893-903
    • Hong, S.1    Kim, S.A.2    Guerinot, M.L.3    McClung, C.R.4
  • 20
    • 84863239723 scopus 로고    scopus 로고
    • FLOWERING BHLH transcriptional activators control expression of the photoperiodic flowering regulator CONSTANS in Arabidopsis
    • Ito S., Song Y.H., Josephson-Day A.R., Miller R.J., Breton G., Olmstead R.G., Imaizumi T. FLOWERING BHLH transcriptional activators control expression of the photoperiodic flowering regulator CONSTANS in Arabidopsis. Proc. Natl. Acad. Sci. USA 2012, 109:3582-3587.
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 3582-3587
    • Ito, S.1    Song, Y.H.2    Josephson-Day, A.R.3    Miller, R.J.4    Breton, G.5    Olmstead, R.G.6    Imaizumi, T.7
  • 21
    • 0036581417 scopus 로고    scopus 로고
    • GATEWAY vectors for Agrobacterium-mediated plant transformation
    • Karimi M., Inzé D., Depicker A. GATEWAY vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci. 2002, 7:193-195.
    • (2002) Trends Plant Sci. , vol.7 , pp. 193-195
    • Karimi, M.1    Inzé, D.2    Depicker, A.3
  • 22
    • 77957739456 scopus 로고    scopus 로고
    • Rapid assessment of gene function in the circadian clock using artificial microRNA in Arabidopsis mesophyll protoplasts
    • Kim J., Somers D.E. Rapid assessment of gene function in the circadian clock using artificial microRNA in Arabidopsis mesophyll protoplasts. Plant Physiol. 2010, 154:611-621.
    • (2010) Plant Physiol. , vol.154 , pp. 611-621
    • Kim, J.1    Somers, D.E.2
  • 23
    • 84867667011 scopus 로고    scopus 로고
    • Transcriptional architecture and chromatin landscape of the core circadian clock in mammals
    • Koike N., Yoo S.H., Huang H.C., Kumar V., Lee C., Kim T.K., Takahashi J.S. Transcriptional architecture and chromatin landscape of the core circadian clock in mammals. Science 2012, 338:349-354.
    • (2012) Science , vol.338 , pp. 349-354
    • Koike, N.1    Yoo, S.H.2    Huang, H.C.3    Kumar, V.4    Lee, C.5    Kim, T.K.6    Takahashi, J.S.7
  • 24
    • 33644878620 scopus 로고    scopus 로고
    • DBD: a transcription factor prediction database
    • Kummerfeld S.K., Teichmann S.A. DBD: a transcription factor prediction database. Nucleic Acids Res. 2006, 34(Database issue):D74-D81.
    • (2006) Nucleic Acids Res. , vol.34 , Issue.Database issue
    • Kummerfeld, S.K.1    Teichmann, S.A.2
  • 27
    • 84865204375 scopus 로고    scopus 로고
    • Complexity in the wiring and regulation of plant circadian networks
    • Nagel D.H., Kay S.A. Complexity in the wiring and regulation of plant circadian networks. Curr. Biol. 2012, 22:R648-R657.
    • (2012) Curr. Biol. , vol.22
    • Nagel, D.H.1    Kay, S.A.2
  • 29
    • 77950452042 scopus 로고    scopus 로고
    • Linking genotype to phenotype using the Arabidopsis unimutant collection
    • O'Malley R.C., Ecker J.R. Linking genotype to phenotype using the Arabidopsis unimutant collection. Plant J. 2010, 61:928-940.
    • (2010) Plant J. , vol.61 , pp. 928-940
    • O'Malley, R.C.1    Ecker, J.R.2
  • 30
    • 43149086112 scopus 로고    scopus 로고
    • Global regulatory logic for specification of an embryonic cell lineage
    • Oliveri P., Tu Q., Davidson E.H. Global regulatory logic for specification of an embryonic cell lineage. Proc. Natl. Acad. Sci. USA 2008, 105:5955-5962.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 5955-5962
    • Oliveri, P.1    Tu, Q.2    Davidson, E.H.3
  • 31
    • 79957465982 scopus 로고    scopus 로고
    • A high-throughput screening system for Arabidopsis transcription factors and its application to Med25-dependent transcriptional regulation
    • Ou B., Yin K.Q., Liu S.N., Yang Y., Gu T., Wing Hui J.M., Zhang L., Miao J., Kondou Y., Matsui M., et al. A high-throughput screening system for Arabidopsis transcription factors and its application to Med25-dependent transcriptional regulation. Mol. Plant 2011, 4:546-555.
    • (2011) Mol. Plant , vol.4 , pp. 546-555
    • Ou, B.1    Yin, K.Q.2    Liu, S.N.3    Yang, Y.4    Gu, T.5    Wing Hui, J.M.6    Zhang, L.7    Miao, J.8    Kondou, Y.9    Matsui, M.10
  • 34
    • 77953293491 scopus 로고    scopus 로고
    • An expanding universe of circadian networks in higher plants
    • Pruneda-Paz J.L., Kay S.A. An expanding universe of circadian networks in higher plants. Trends Plant Sci. 2010, 15:259-265.
    • (2010) Trends Plant Sci. , vol.15 , pp. 259-265
    • Pruneda-Paz, J.L.1    Kay, S.A.2
  • 35
    • 62449114708 scopus 로고    scopus 로고
    • A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock
    • Pruneda-Paz J.L., Breton G., Para A., Kay S.A. A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock. Science 2009, 323:1481-1485.
    • (2009) Science , vol.323 , pp. 1481-1485
    • Pruneda-Paz, J.L.1    Breton, G.2    Para, A.3    Kay, S.A.4
  • 36
    • 84901386271 scopus 로고    scopus 로고
    • Synthetic nucleases for genome engineering in plants: prospects for a bright future
    • Puchta H., Fauser F. Synthetic nucleases for genome engineering in plants: prospects for a bright future. Plant J. 2014, 78:727-741.
    • (2014) Plant J. , vol.78 , pp. 727-741
    • Puchta, H.1    Fauser, F.2
  • 38
    • 79952261359 scopus 로고    scopus 로고
    • Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver
    • Rey G., Cesbron F., Rougemont J., Reinke H., Brunner M., Naef F. Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver. PLoS Biol. 2011, 9:e1000595.
    • (2011) PLoS Biol. , vol.9
    • Rey, G.1    Cesbron, F.2    Rougemont, J.3    Reinke, H.4    Brunner, M.5    Naef, F.6
  • 39
    • 0037249498 scopus 로고    scopus 로고
    • The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community
    • Rhee S.Y., Beavis W., Berardini T.Z., Chen G., Dixon D., Doyle A., Garcia-Hernandez M., Huala E., Lander G., Montoya M., et al. The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Res. 2003, 31:224-228.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 224-228
    • Rhee, S.Y.1    Beavis, W.2    Berardini, T.Z.3    Chen, G.4    Dixon, D.5    Doyle, A.6    Garcia-Hernandez, M.7    Huala, E.8    Lander, G.9    Montoya, M.10
  • 42
    • 33644794386 scopus 로고    scopus 로고
    • Transcription factor families have much higher expansion rates in plants than in animals
    • Shiu S.H., Shih M.C., Li W.H. Transcription factor families have much higher expansion rates in plants than in animals. Plant Physiol. 2005, 139:18-26.
    • (2005) Plant Physiol. , vol.139 , pp. 18-26
    • Shiu, S.H.1    Shih, M.C.2    Li, W.H.3
  • 46
    • 33645525430 scopus 로고    scopus 로고
    • Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations
    • Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P. Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations. Plant Biotechnol. J. 2006, 4:317-324.
    • (2006) Plant Biotechnol. J. , vol.4 , pp. 317-324
    • Underwood, B.A.1    Vanderhaeghen, R.2    Whitford, R.3    Town, C.D.4    Hilson, P.5
  • 47
    • 0034854563 scopus 로고    scopus 로고
    • High-throughput yeast two-hybrid assays for large-scale protein interaction mapping
    • Walhout A.J., Vidal M. High-throughput yeast two-hybrid assays for large-scale protein interaction mapping. Methods 2001, 24:297-306.
    • (2001) Methods , vol.24 , pp. 297-306
    • Walhout, A.J.1    Vidal, M.2
  • 48
    • 84872209940 scopus 로고    scopus 로고
    • Molecular screening tools to study Arabidopsis transcription factors
    • Wehner N., Weiste C., Dröge-Laser W. Molecular screening tools to study Arabidopsis transcription factors. Front Plant Sci 2011, 2:68.
    • (2011) Front Plant Sci , vol.2 , pp. 68
    • Wehner, N.1    Weiste, C.2    Dröge-Laser, W.3
  • 49
    • 84856660311 scopus 로고    scopus 로고
    • A catalogue of eukaryotic transcription factor types, their evolutionary origin, and species distribution
    • Weirauch M.T., Hughes T.R. A catalogue of eukaryotic transcription factor types, their evolutionary origin, and species distribution. Subcell. Biochem. 2011, 52:25-73.
    • (2011) Subcell. Biochem. , vol.52 , pp. 25-73
    • Weirauch, M.T.1    Hughes, T.R.2
  • 50
    • 73449139768 scopus 로고    scopus 로고
    • Tape-Arabidopsis Sandwich - a simpler Arabidopsis protoplast isolation method
    • Wu F.H., Shen S.C., Lee L.Y., Lee S.H., Chan M.T., Lin C.S. Tape-Arabidopsis Sandwich - a simpler Arabidopsis protoplast isolation method. Plant Methods 2009, 5:16.
    • (2009) Plant Methods , vol.5 , pp. 16
    • Wu, F.H.1    Shen, S.C.2    Lee, L.Y.3    Lee, S.H.4    Chan, M.T.5    Lin, C.S.6
  • 52
    • 77958504804 scopus 로고    scopus 로고
    • Clocks not winding down: unravelling circadian networks
    • Zhang E.E., Kay S.A. Clocks not winding down: unravelling circadian networks. Nat. Rev. Mol. Cell Biol. 2010, 11:764-776.
    • (2010) Nat. Rev. Mol. Cell Biol. , vol.11 , pp. 764-776
    • Zhang, E.E.1    Kay, S.A.2
  • 53
    • 33845435000 scopus 로고    scopus 로고
    • Agrobacterium-mediated transformation of Arabidopsis thaliana using the floral dip method
    • Zhang X., Henriques R., Lin S.S., Niu Q.W., Chua N.H. Agrobacterium-mediated transformation of Arabidopsis thaliana using the floral dip method. Nat. Protoc. 2006, 1:641-646.
    • (2006) Nat. Protoc. , vol.1 , pp. 641-646
    • Zhang, X.1    Henriques, R.2    Lin, S.S.3    Niu, Q.W.4    Chua, N.H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.