Lipid-protein nanodiscs offer new perspectives for structural and functional studies of water-soluble membrane-active peptides

Acta Naturae

Volumn 6, Issue 21, 2014, Pages 84-94

  Shenkarev, Z O ^a   Lyukmanova, E N ^a   Paramonov, A S ^a   Panteleev, P V ^a   Balandin, S V ^a   Shulepko, M A ^a,b   Mineev, K S ^a   Ovchinnikova, T V ^a,c   Kirpichnikov, M P ^a,b   Arseniev, A S ^a,c  

^a SHEMYAKIN OVCHINNIKOV INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^b MOSCOW STATE UNIVERSITY   (Russian Federation)

^c MOSCOW INSTITUTE OF PHYSICS AND TECHNOLOGY   (Russian Federation)

Author keywords

Antimicrobial peptides; High density lipoprotein particles; Lipid protein nanodiscs; Membrane mimetics; Membrane active peptides; Neurotoxins; NMR spectroscopy

Indexed keywords

EID: 84904752345     PISSN: 20758251     EISSN: None     Source Type: Journal    
DOI: 10.32607/20758251-2014-6-2-84-94     Document Type: Article

References (37)

1. Zasloff M. // Nature. 2002. V. 415. No 6870. P. 389-395.
2. Thomas L., Scheidt H.A., Bettio A., Beck-Sickinger A.G., Huster D., Zschörnig O. // Eur. Biophys. J. 2009. V. 38. No 5. P. 663-677.
3. Lee S.Y., MacKinnon R. // Nature. 2004. V. 430. No 6996. P. 232-235.
4. Mäler L. // Mol. Membr. Biol. 2012. V. 29. No 5. P. 155-176.
5. Oxenoid K., Chou J.J. // Curr. Opin. Struct. Biol. 2013. Doi: 10.1016/j.sbi.2013.03.010.
6. Chou J.J., Kaufman J.D., Stahl S.J., Wingfield P.T., Bax A. // J. Am. Chem. Soc. 2002. V. 124. No 11. P. 2450-2451.
7. Warschawski D.E., Arnold A.A., Beaugrand M., Gravel A., Chartrand É., Marcotte I. // Biochim. Biophys. Acta. 2011. V. 1808. No 8. P. 1957-1974.
8. Bayburt T.H., Sligar S.G. // FEBS Lett. 2010. V. 584. No 9. P. 1721-1727.
9. Denisov I.G., McLean M.A., Shaw A.W., Grinkova Y.V., Sligar S.G. // J Phys Chem B. 2005. V. 109. No 32. P. 15580- 15588.
10. Frauenfeld J., Gumbart J., Sluis E.O. van der, Funes S., Gartmann M., Beatrix B., Mielke T., Berninghausen O., Becker T., Schulten K., et al. // Nat Struct Mol Biol. 2011. V. 18. No 5. P. 614-621.
11. Katayama H., Wang J., Tama F., Chollet L., Gogol E.P., Collier R.J., Fisher M.T. // Proc.Natl.Acad.Sci U.S.A. 2010. V. 107. No 8. P. 3453-3457.
12. Lyukmanova E.N., Shenkarev Z.O., Paramonov A.S., Sobol A.G., Ovchinnikova T.V., Chupin V.V., Kirpichnikov M.P., Blommers M.J., Arseniev A.S. // J.Am.Chem.Soc. 2008. V. 130. No 7. P. 2140-2141.
13. Shenkarev Z.O., Lyukmanova E.N., Paramonov A.S., Shingarova L.N., Chupin V.V., Kirpichnikov M.P., Blommers M.J.J., Arseniev A.S. // J. Am. Chem. Soc. 2010. V. 132. No 16. P. 5628-5629.
14. Hagn F., Etzkorn M., Raschle T., Wagner G. // J. Am. Chem. Soc. 2013. V. 135. No 5. P. 1919-1925.
15. Shenkarev Z.O., Paramonov A.S., Lyukmanova E.N., Gizatullina A.K., Zhuravleva A.V., Tagaev A.A., Yakimenko Z.A., Telezhinskaya I.N., Kirpichnikov M.P., Ovchinnikova T.V., et al. // Chem. Biodivers. 2013. V. 10. No 5. P. 838-863.
16. Schuler M.A., Denisov I.G., Sligar S.G. // Methods Mol. Biol. 2013. V. 974. P. 415-433.
17. Kyte J., Doolittle R.F. // J. Mol. Biol. 1982. V. 157. No 1. P. 105-132.
18. Shenkarev Z.O., Balandin S.V., Trunov K.I., Paramonov A.S., Sukhanov S.V., Barsukov L.I., Arseniev A.S., Ovchinnikova T.V. // Biochemistry. 2011. V. 50. No 28. P. 6255-6265.
19. Lesovoy D.M., Bocharov E.V., Lyukmanova E.N., Kosinsky Y.A., Shulepko M.A., Dolgikh D.A., Kirpichnikov M.P., Efremov R.G., Arseniev A.S. // Biophys. J. 2009. V. 97. No 7. P. 2089-2097.
20. Shenkarev Z.O., Lyukmanova E.N., Solozhenkin O.I., Gagnidze I.E., Nekrasova O.V., Chupin V.V., Tagaev A.A., Yakimenko Z.A., Ovchinnikova T.V., Kirpichnikov M.P., et al. // Biochemistry (Mosc.). 2009. V. 74. No 7. P. 756-765.
21. Ovchinnikova T.V., Shenkarev Z.O., Nadezhdin K.D., Balandin S.V., Zhmak M.N., Kudelina I.A., Finkina E.I., Kokryakov V.N., Arseniev A.S. // Biochem. Biophys. Res. Commun. 2007. V. 360. No 1. P. 156-162.
22. Lyukmanova E.N., Shenkarev Z.O., Schulga A.A., Ermolyuk Y.S., Mordvintsev D.Y., Utkin Y.N., Shoulepko M.A., Hogg R.C., Bertrand D., Dolgikh D.A., et al. // J. Biol. Chem. 2007. V. 282. No 34. P. 24784-24791.
23. Chill J.H., Louis J.M., Baber J.L., Bax A. // J.Biomol.NMR. 2006. V. 36. No 2. P. 123-136.
24. Andrä J., Jakovkin I., Grötzinger J., Hecht O., Krasnosdembskaya A.D., Goldmann T., Gutsmann T., Leippe M. // Biochem. J. 2008. V. 410. No 1. P. 113-122.
25. Nagle J.F., Tristram-Nagle S. // Biochim. Biophys. Acta. 2000. V. 1469. No 3. P. 159-195.
26. Lyukmanova E.N., Shenkarev Z.O., Khabibullina N.F., Kopeina G.S., Shulepko M.A., Paramonov A.S., Mineev K.S., Tikhonov R.V., Shingarova L.N., Petrovskaya L.E., et al. // Biochim. Biophys. Acta. 2012. V. 1818. No 3. P. 349-358.
27. Clay M.A., Pyle D.H., Rye K.-A., Barter P.J. // J. Biol. Chem. 2000. V. 275. No 12. P. 9019-9025.
28. Jayaraman S., Gantz D.L., Gursky O. // Biophys. J. 2005. V. 88. No 4. P. 2907-2918.
29. Huang H.W. // Biochim. Biophys. Acta. 2006. V. 1758. No 9. P. 1292-1302.
30. Sheng J.R., Grimme S., Bhattacharya P., Stowell M.H.B., Artinger M., Prabahakar B.S., Meriggioli M.N. // Exp. Neurol. 2010. V. 225. No 2. P. 320-327.
31. Jung H.J., Lee J.Y., Kim S.H., Eu Y.J., Shin S.Y., Milescu M., Swartz K.J., Kim J.I. // Biochemistry. 2005. V. 44. No 16. P. 6015-6023.
32. Schmidt D., MacKinnon R. // Proc.Natl.Acad.Sci U.S.A. 2008. V. 105. No 49. P. 19276-19281.
33. Shenkarev Z.O., Lyukmanova E.N., Butenko I.O., Petrovskaya L.E., Paramonov A.S., Shulepko M.A., Nekrasova O.V., Kirpichnikov M.P., Arseniev A.S. // Biochim. Biophys. Acta. 2013. V. 1828. No 2. P. 776-784.
34. Nakano M., Fukuda M., Kudo T., Miyazaki M., Wada Y., Matsuzaki N., Endo H., Handa T. // J. Am. Chem. Soc. 2009. V. 131. No 23. P. 8308-8312.
35. Golovanov A.P., Lomize A.L., Arseniev A.S., Utkin Y.N., Tsetlin V.I. // Eur. J. Biochem. 1993. V. 213. No 3. P. 1213- 1223.
36. Teixeira-Clerc F., Ménez A., Kessler P. // J. Biol. Chem. 2002. V. 277. No 28. P. 25741-25747.
37. Mazhab-Jafari M.T., Marshall C.B., Stathopulos P.B., Kobashigawa Y., Stambolic V., Kay L.E., Inagaki F., Ikura M. // J. Am. Chem. Soc. 2013. V. 135. No 9. P. 3367-3370.