-
1
-
-
84859266139
-
Small-angle X-ray scattering and single-molecule FRET spectroscopy produce highly divergent views of the low-denaturant unfolded state
-
Yoo TY, et al. (2012) Small-angle X-ray scattering and single-molecule FRET spectroscopy produce highly divergent views of the low-denaturant unfolded state. J Mol Biol 418(3-4):226-236.
-
(2012)
J Mol Biol
, vol.418
, Issue.3-4
, pp. 226-236
-
-
Yoo, T.Y.1
-
2
-
-
0017125145
-
Use of gel chromatography for the determination of the Stokes radii of proteins in the presence and absence of detergents. A reexamination
-
Nozaki Y, Schechter NM, Reynolds JA, Tanford C (1976) Use of gel chromatography for the determination of the Stokes radii of proteins in the presence and absence of detergents. A reexamination. Biochemistry 15(17):3884-3890.
-
(1976)
Biochemistry
, vol.15
, Issue.17
, pp. 3884-3890
-
-
Nozaki, Y.1
Schechter, N.M.2
Reynolds, J.A.3
Tanford, C.4
-
4
-
-
33744937937
-
Early events in protein folding explored by rapid mixing methods
-
DOI 10.1021/cr040430y
-
Roder H, Maki K, Cheng H (2006) Early events in protein folding explored by rapid mixing methods. Chem Rev 106(5):1836-1861. (Pubitemid 43840532)
-
(2006)
Chemical Reviews
, vol.106
, Issue.5
, pp. 1836-1861
-
-
Roder, H.1
Maki, K.2
Cheng, H.3
-
5
-
-
0030587856
-
Fast events in protein folding
-
Eaton WA, Thompson PA, Chan CK, Hage SJ, Hofrichter J (1996) Fast events in protein folding. Structure 4(10):1133-1139. (Pubitemid 27005381)
-
(1996)
Structure
, vol.4
, Issue.10
, pp. 1133-1139
-
-
Eaton, W.A.1
Thompson, P.A.2
Chan, C.-K.3
Hagen, S.J.4
Hofrichter, J.5
-
6
-
-
84867048390
-
Polymer scaling laws of unfolded and intrinsically disordered proteins quantified with single-molecule spectroscopy
-
Hofmann H, et al. (2012) Polymer scaling laws of unfolded and intrinsically disordered proteins quantified with single-molecule spectroscopy. Proc Natl Acad Sci USA 109(40):16155-16160.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.40
, pp. 16155-16160
-
-
Hofmann, H.1
-
7
-
-
84857774493
-
Structure and dynamics of an unfolded protein examined by molecular dynamics simulation
-
Lindorff-Larsen K, Trbovic N, Maragakis P, Piana S, Shaw DE (2012) Structure and dynamics of an unfolded protein examined by molecular dynamics simulation. J Am Chem Soc 134(8):3787-3791.
-
(2012)
J Am Chem Soc
, vol.134
, Issue.8
, pp. 3787-3791
-
-
Lindorff-Larsen, K.1
Trbovic, N.2
Maragakis, P.3
Piana, S.4
Shaw, D.E.5
-
8
-
-
0035909813
-
Apoflavodoxin folding mechanism: An alpha/beta protein with an essentially off-pathway intermediate
-
DOI 10.1021/bi010216t
-
Fernández-Recio J, Genzor CG, Sancho J (2001) Apoflavodoxin folding mechanism: An alpha/beta protein with an essentially off-pathway intermediate. Biochemistry 40(50):15234-15245. (Pubitemid 33151938)
-
(2001)
Biochemistry
, vol.40
, Issue.50
, pp. 15234-15245
-
-
Fernandez-Recio, J.1
Genzor, C.G.2
Sancho, J.3
-
10
-
-
50049118547
-
Subdomain competition, cooperativity, and topological frustration in the folding of CheY
-
Hills RD, Jr, Brooks CL, 3rd (2008) Subdomain competition, cooperativity, and topological frustration in the folding of CheY. J Mol Biol 382(2):485-495.
-
(2008)
J Mol Biol
, vol.382
, Issue.2
, pp. 485-495
-
-
Hills Jr., R.D.1
Brooks III, C.L.2
-
11
-
-
77951711256
-
Topological frustration in beta alpha-repeat proteins: Sequence diversity modulates the conserved folding mechanisms of alpha/beta/alpha sandwich proteins
-
Hills RD, Jr, et al. (2010) Topological frustration in beta alpha-repeat proteins: Sequence diversity modulates the conserved folding mechanisms of alpha/beta/alpha sandwich proteins. J Mol Biol 398(2):332-350.
-
(2010)
J Mol Biol
, vol.398
, Issue.2
, pp. 332-350
-
-
Hills Jr., R.D.1
-
12
-
-
51649106422
-
Microsecond acquisition of heterogeneous structure in the folding of a TIM barrel protein
-
Wu Y, Kondrashkina E, Kayatekin C, Matthews CR, Bilsel O (2008) Microsecond acquisition of heterogeneous structure in the folding of a TIM barrel protein. Proc Natl Acad Sci USA 105(36):13367-13372.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.36
, pp. 13367-13372
-
-
Wu, Y.1
Kondrashkina, E.2
Kayatekin, C.3
Matthews, C.R.4
Bilsel, O.5
-
13
-
-
23244433815
-
Equilibrium and kinetic folding pathways of a TIM barrel with a funneled energy landscape
-
DOI 10.1529/biophysj.105.059147
-
Finke JM, Onuchic JN (2005) Equilibrium and kinetic folding pathways of a TIM barrel with a funneled energy landscape. Biophys J 89(1):488-505. (Pubitemid 41098303)
-
(2005)
Biophysical Journal
, vol.89
, Issue.1
, pp. 488-505
-
-
Finke, J.M.1
Onuchic, J.N.2
-
14
-
-
50049084050
-
Kinetic traps in the folding of beta alpha-repeat proteins: CheY initially misfolds before accessing the native conformation
-
Kathuria SV, Day IJ, Wallace LA, Matthews CR (2008) Kinetic traps in the folding of beta alpha-repeat proteins: CheY initially misfolds before accessing the native conformation. J Mol Biol 382(2):467-484.
-
(2008)
J Mol Biol
, vol.382
, Issue.2
, pp. 467-484
-
-
Kathuria, S.V.1
Day, I.J.2
Wallace, L.A.3
Matthews, C.R.4
-
15
-
-
58049200780
-
Extensive formation of off-pathway species during folding of an alpha-beta parallel protein is due to docking of (non)native structure elements in unfolded molecules
-
Nabuurs SM, Westphal AH, van Mierlo CPM (2008) Extensive formation of off-pathway species during folding of an alpha-beta parallel protein is due to docking of (non)native structure elements in unfolded molecules. J Am Chem Soc 130(50):16914-16920.
-
(2008)
J Am Chem Soc
, vol.130
, Issue.50
, pp. 16914-16920
-
-
Nabuurs, S.M.1
Westphal, A.H.2
Van Mierlo, C.P.M.3
-
16
-
-
33645217096
-
The folding energy landscape of apoflavodoxin is rugged: Hydrogen exchange reveals nonproductive misfolded intermediates
-
Bollen YJM, Kamphuis MB, van Mierlo CPM (2006) The folding energy landscape of apoflavodoxin is rugged: Hydrogen exchange reveals nonproductive misfolded intermediates. Proc Natl Acad Sci USA 103(11):4095-4100.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.11
, pp. 4095-4100
-
-
Bollen, Y.J.M.1
Kamphuis, M.B.2
Van Mierlo, C.P.M.3
-
17
-
-
79959830883
-
Single-molecule fluorescence reveals sequence-specific misfolding in multidomain proteins
-
Borgia MB, et al. (2011) Single-molecule fluorescence reveals sequence-specific misfolding in multidomain proteins. Nature 474(7353):662-665.
-
(2011)
Nature
, vol.474
, Issue.7353
, pp. 662-665
-
-
Borgia, M.B.1
-
18
-
-
0034687123
-
Topology, stability, sequence, and length: Defining the determinants of two-state protein folding kinetics
-
Plaxco KW, Simons KT, Ruczinski I, Baker D (2000) Topology, stability, sequence, and length: defining the determinants of two-state protein folding kinetics. Biochemistry 39(37):11177-11183.
-
(2000)
Biochemistry
, vol.39
, Issue.37
, pp. 11177-11183
-
-
Plaxco, K.W.1
Simons, K.T.2
Ruczinski, I.3
Baker, D.4
-
19
-
-
0036710147
-
An NMR view of the folding process of a CheY mutant at the residue level
-
DOI 10.1016/S0969-2126(02)00804-3, PII S0969212602008043
-
Garcia P, Serrano L, Rico M, Bruix M (2002) An NMR view of the folding process of a CheY mutant at the residue level. Structure 10(9):1173-1185. (Pubitemid 35254006)
-
(2002)
Structure
, vol.10
, Issue.9
, pp. 1173-1185
-
-
Garcia, P.1
Serrano, L.2
Rico, M.3
Bruix, M.4
-
20
-
-
0028176281
-
Kinetic characterization of the chemotactic protein from Escherichia coli, CheY. Kinetic analysis of the inverse hydrophobic effect
-
Muñoz V, Lopez EM, Jager M, Serrano L (1994) Kinetic characterization of the chemotactic protein from Escherichia coli, CheY. Kinetic analysis of the inverse hydrophobic effect. Biochemistry 33(19):5858-5866.
-
(1994)
Biochemistry
, vol.33
, Issue.19
, pp. 5858-5866
-
-
Muñoz, V.1
Lopez, E.M.2
Jager, M.3
Serrano, L.4
-
21
-
-
0030334834
-
Structure of the transition state for folding of the 129 aa protein CheY resembles that of a smaller protein, Cl-2
-
López-Hernández E, Serrano L (1996) Structure of the transition state for folding of the 129 aa protein CheY resembles that of a smaller protein, CI-2. Fold Des 1(1):43-55. (Pubitemid 126748158)
-
(1996)
Folding and Design
, vol.1
, Issue.1
, pp. 43-55
-
-
Lopez-Hernandez, E.1
Serrano, L.2
-
22
-
-
63449129633
-
Insights from coarse-grained Gō models for protein folding and dynamics
-
Hills RD, Jr, Brooks CL, 3rd (2009) Insights from coarse-grained Gō models for protein folding and dynamics. Int J Mol Sci 10(3):889-905.
-
(2009)
Int J Mol Sci
, vol.10
, Issue.3
, pp. 889-905
-
-
Hills Jr., R.D.1
Brooks III, C.L.2
-
23
-
-
0022555885
-
Determination and analysis of urea and guanidine hydrochloride denaturation curves
-
Pace CN (1986) Determination and analysis of urea and guanidine hydrochloride denaturation curves. Methods Enzymol 131:266-280.
-
(1986)
Methods Enzymol
, vol.131
, pp. 266-280
-
-
Pace, C.N.1
-
24
-
-
0028820703
-
Denaturant m values and heat capacity changes: Relation to changes in accessible surface areas of protein unfolding
-
Myers JK, Pace CN, Scholtz JM (1995) Denaturant m values and heat capacity changes: Relation to changes in accessible surface areas of protein unfolding. Protein Sci 4(10):2138-2148.
-
(1995)
Protein Sci
, vol.4
, Issue.10
, pp. 2138-2148
-
-
Myers, J.K.1
Pace, C.N.2
Scholtz, J.M.3
-
25
-
-
4344716256
-
Random-coil behavior and the dimensions of chemically unfolded proteins
-
DOI 10.1073/pnas.0403643101
-
Kohn JE, et al. (2004) Random-coil behavior and the dimensions of chemically unfolded proteins. Proc Natl Acad Sci USA 101(34):12491-12496. (Pubitemid 39122051)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.34
, pp. 12491-12496
-
-
Kohn, J.E.1
Millett, I.S.2
Jacob, J.3
Zagrovic, B.4
Dillon, T.M.5
Cingel, N.6
Dothager, R.S.7
Seifert, S.8
Thiyagarajan, P.9
Sosnick, T.R.10
Hasan, M.Z.11
Pande, V.S.12
Ruczinski, I.13
Doniach, S.14
Plaxco, K.W.15
-
26
-
-
84904681341
-
Protein Dynamics: Methods and Protocols
-
Methods in Molecular Biology, ed Livesay DR (Humana, Totowa, NJ)
-
Hills RD, Jr (2014) Protein Dynamics: Methods and Protocols, Methods in Molecular Biology, Methods in Molecular Biology, ed Livesay DR (Humana, Totowa, NJ), pp 123-140.
-
(2014)
Methods in Molecular Biology
, pp. 123-140
-
-
Hills Jr., R.D.1
-
27
-
-
0035943433
-
Prediction of folding mechanism for circular-permuted proteins
-
DOI 10.1006/jmbi.2001.4871
-
Clementi C, Jennings PA, Onuchic JN (2001) Prediction of folding mechanism for circular-permuted proteins. J Mol Biol 311(4):879-890. (Pubitemid 32803742)
-
(2001)
Journal of Molecular Biology
, vol.311
, Issue.4
, pp. 879-890
-
-
Clementi, C.1
Jennings, P.A.2
Onuchic, J.N.3
-
28
-
-
84898007206
-
Microsecond barrier-limited chain collapse observed by time-resolved FRET and SAXS
-
Kathuria SV, et al. (2014) Microsecond barrier-limited chain collapse observed by time-resolved FRET and SAXS. J Mol Biol 426(9):1980-1994.
-
(2014)
J Mol Biol
, vol.426
, Issue.9
, pp. 1980-1994
-
-
Kathuria, S.V.1
-
29
-
-
84885586093
-
Sub-millisecond time-resolved SAXS using a continuous-flow mixer and X-ray micro-beam
-
Graceffa R, et al. (2013) Sub-millisecond time-resolved SAXS using a continuous-flow mixer and X-ray micro-beam. J Synchrotron Radiat 20:1-6.
-
(2013)
J Synchrotron Radiat
, vol.20
, pp. 1-6
-
-
Graceffa, R.1
-
30
-
-
0025741662
-
Crystal structure of Escherichia coli CheY refined at 1.7-A resolution
-
Volz K, Matsumura P (1991) Crystal structure of Escherichia coli CheY refined at 1.7-A resolution. J Biol Chem 266(23):15511-15519. (Pubitemid 21907678)
-
(1991)
Journal of Biological Chemistry
, vol.266
, Issue.23
, pp. 15511-15519
-
-
Volz, K.1
Matsumura, P.2
-
31
-
-
0036785556
-
The origins of asymmetry in the folding transition states of protein L and protein G
-
Karanicolas J, Brooks CL, 3rd (2002) The origins of asymmetry in the folding transition states of protein L and protein G. Protein Sci 11(10):2351-2361.
-
(2002)
Protein Sci
, vol.11
, Issue.10
, pp. 2351-2361
-
-
Karanicolas, J.1
Brooks III, C.L.2
-
32
-
-
67650500988
-
CHARMM: The biomolecular simulation program
-
Brooks BR, et al. (2009) CHARMM: The biomolecular simulation program. J Comput Chem 30(10):1545-1614.
-
(2009)
J Comput Chem
, vol.30
, Issue.10
, pp. 1545-1614
-
-
Brooks, B.R.1
|