-
1
-
-
0002555635
-
Sandy beach ecology - A review
-
McLachlan A, Erasmus T, editors. The Hague: W. Junk
-
McLachlan A (1983) Sandy beach ecology - a review. In: McLachlan A, Erasmus T, editors. Sandy Beaches as Ecosystems: 1st International Symposium on Sandy Beaches, Port Elizabeth, South Africa, 17-21 January 1983 Developments in Hydrobiology, 19. The Hague: W. Junk. 321-380.
-
(1983)
Sandy Beaches As Ecosystems: 1st International Symposium on Sandy Beaches, Port Elizabeth, South Africa, 17-21 January 1983 Developments in Hydrobiology
, vol.19
, pp. 321-380
-
-
McLachlan, A.1
-
2
-
-
34547871633
-
Sandy beaches at the brink
-
DOI 10.1111/j.1472-4642.2007.00363.x
-
Schlacher TA, Dugan J, Schoeman DS, Lastra M, Jones A, et al. (2007) Sandy beaches at the brink. Divers Distrib 13: 556-560. (Pubitemid 47262883)
-
(2007)
Diversity and Distributions
, vol.13
, Issue.5
, pp. 556-560
-
-
Schlacher, T.A.1
Dugan, J.2
Schoeman, D.S.3
Lastra, M.4
Jones, A.5
Scapini, F.6
McLachlan, A.7
Defeo, O.8
-
3
-
-
57649233550
-
Threats to sandy beach ecosystems: A review
-
Defeo O, McLachlan A, Schoeman DS, Schlacher TA, Dugan J, et al. (2009) Threats to sandy beach ecosystems: A review. Estuar Coast Shelf Sci 81: 1-12.
-
(2009)
Estuar Coast Shelf Sci
, vol.81
, pp. 1-12
-
-
Defeo, O.1
McLachlan, A.2
Schoeman, D.S.3
Schlacher, T.A.4
Dugan, J.5
-
4
-
-
79955478104
-
The value of disappearing beaches: A hedonic pricing model with endogenous beach width
-
Gopalakrishnan S, Smith MD, Slott JM, Murray AB (2011) The value of disappearing beaches: A hedonic pricing model with endogenous beach width. J Environ Econ Manage 61: 297-310.
-
(2011)
J Environ Econ Manage
, vol.61
, pp. 297-310
-
-
Gopalakrishnan, S.1
Smith, M.D.2
Slott, J.M.3
Murray, A.B.4
-
5
-
-
84857121817
-
Diversity and dynamics of rare and of resident bacterial populations in coastal sands
-
Gobet A, Boer SI, Huse SM, van Beusekom JEE, Quince C, et al. (2012) Diversity and dynamics of rare and of resident bacterial populations in coastal sands. ISME J 6: 542-553.
-
(2012)
ISME J
, vol.6
, pp. 542-553
-
-
Gobet, A.1
Boer, S.I.2
Huse, S.M.3
Van Beusekom, J.E.E.4
Quince, C.5
-
6
-
-
83055184882
-
Hydrocarbon-degrading bacteria and the bacterial community response in Gulf of Mexico beach sands impacted by the Deepwater Horizon oil spill
-
Kostka JE, Prakash O, Overholt WA, Green SJ, Freyer G, et al. (2011) Hydrocarbon-degrading bacteria and the bacterial community response in Gulf of Mexico beach sands impacted by the Deepwater Horizon oil spill. Appl Environ Microbiol 77: 7962-7974.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 7962-7974
-
-
Kostka, J.E.1
Prakash, O.2
Overholt, W.A.3
Green, S.J.4
Freyer, G.5
-
7
-
-
33845230332
-
Effect of hydrocarbon pollution on the microbial properties of a sandy and a clay soil
-
DOI 10.1016/j.chemosphere.2006.08.021, PII S0045653506011507
-
Labud V, Garcia C, Hernandez T (2007) Effect of hydrocarbon pollution on the microbial properties of a sandy and a clay soil. Chemosphere 66: 1863-1871. (Pubitemid 44855837)
-
(2007)
Chemosphere
, vol.66
, Issue.10
, pp. 1863-1871
-
-
Labud, V.1
Garcia, C.2
Hernandez, T.3
-
8
-
-
34248351583
-
Physiological properties of bacteria inhabiting polluted and unpolluted marine sandy beaches (southern Baltic Sea)
-
Podgorska B, Mudryk ZJ (2007) Physiological properties of bacteria inhabiting polluted and unpolluted marine sandy beaches (Southern Baltic Sea). Ekologia Polska (Polish J Ecol) 55: 15-26. (Pubitemid 46732399)
-
(2007)
Polish Journal of Ecology
, vol.55
, Issue.1
, pp. 15-26
-
-
Podgorska, B.1
Mudryk, Z.J.2
-
9
-
-
84900415328
-
Permeable marine sediments: Overturning an old paradigm
-
Boudreau BP, Huettel M, Forster S, Jahnke RA, McLachlan A, et al. (2001) Permeable marine sediments: Overturning an old paradigm. Eos (Washington DC) 82: 133-136.
-
(2001)
Eos (Washington DC)
, vol.82
, pp. 133-136
-
-
Boudreau, B.P.1
Huettel, M.2
Forster, S.3
Jahnke, R.A.4
McLachlan, A.5
-
10
-
-
0033627383
-
Field observations on the variability of crude oil impact on indigenous hydrocarbon-degrading bacteria from sub-Antarctic intertidal sediments
-
DOI 10.1016/S0141-1136(99)00080-X, PII S014111369900080X
-
Delille D, Delille B (2000) Field observations on the variability of crude oil impact on indigenous hydrocarbon-degrading bacteria from sub-Antarctic intertidal sediments. Mar Environ Res 49: 403-417. (Pubitemid 30246040)
-
(2000)
Marine Environmental Research
, vol.49
, Issue.5
, pp. 403-417
-
-
Delille, D.1
Delille, B.2
-
11
-
-
0001165084
-
Laboratory study of disturbance in marine sediments: Response of microbial community
-
Findlay RH, Trexler MB, Guckert JB, White DC (1990) Laboratory study of disturbance in marine sediments: response of microbial community. Mar Ecol Prog Ser 62: 121-133.
-
(1990)
Mar Ecol Prog Ser
, vol.62
, pp. 121-133
-
-
Findlay, R.H.1
Trexler, M.B.2
Guckert, J.B.3
White, D.C.4
-
12
-
-
49449088930
-
Anaerobic biodegradation of aromatic hydrocarbons: Pathways and prospects
-
Foght J (2008) Anaerobic biodegradation of aromatic hydrocarbons: Pathways and prospects. J Mol Microbiol Biotechnol 15: 93-120.
-
(2008)
J Mol Microbiol Biotechnol
, vol.15
, pp. 93-120
-
-
Foght, J.1
-
13
-
-
0025180428
-
Microbial degradation of hydrocarbons in the environment
-
Leahy JG, Colwell RR (1990) Microbial degradation of hydrocarbons in the environment. Microbiol Mol Biol Rev 54: 305-315.
-
(1990)
Microbiol Mol Biol Rev
, vol.54
, pp. 305-315
-
-
Leahy, J.G.1
Colwell, R.R.2
-
14
-
-
47749094350
-
Characterization of nitrifying, denitrifying, and overall bacterial communities in permeable marine sediments of the northeastern Gulf of Mexico
-
DOI 10.1128/AEM.02692-07
-
Mills HJ, Hunter E, Humphrys M, Kerkhof L, McGuinness L, et al. (2008) Characterizing of nitrifying, denitrifying, and overall bacterial communities in permeable marine sediments of the northeastern Gulf of Mexico. Appl Environ Microbiol 74: 4440-4453. (Pubitemid 352031026)
-
(2008)
Applied and Environmental Microbiology
, vol.74
, Issue.14
, pp. 4440-4453
-
-
Mills, H.J.1
Hunter, E.2
Humphrys, M.3
Kerkhof, L.4
McGuinness, L.5
Huettel, M.6
Kostka, J.E.7
-
15
-
-
84883765148
-
Shifts in the microbial community composition of Gulf Coast beaches following beach oiling
-
doi:74210.71371/journal.pone.0074265
-
Newton RJ, Huse SM, Morrison HG, Peake CS, Sogin ML, et al. (2013) Shifts in the microbial community composition of Gulf Coast beaches following beach oiling. PLoS One 8: e74265: doi:74210.71371/journal.pone.0074265.
-
(2013)
PLoS One
, vol.8
-
-
Newton, R.J.1
Huse, S.M.2
Morrison, H.G.3
Peake, C.S.4
Sogin, M.L.5
-
16
-
-
84863398035
-
Impact of the deepwater horizon oil spill on bioavailable polycyclic aromatic hydrocarbons in Gulf of Mexico Coastal waters
-
Allan SE, Smith BW, Anderson KA (2012) Impact of the deepwater horizon oil spill on bioavailable polycyclic aromatic hydrocarbons in Gulf of Mexico Coastal waters. Environ Sci Technol 46: 2033-2039.
-
(2012)
Environ Sci Technol
, vol.46
, pp. 2033-2039
-
-
Allan, S.E.1
Smith, B.W.2
Anderson, K.A.3
-
18
-
-
84878902097
-
Extent and degree of shoreline oiling: Deepwater Horizon oil spill, Gulf of Mexico
-
doi:65010.61371/journal.pone.0065087
-
Michel J, Owens EH, Zengel S, Graham A, Nixon Z, et al. (2013) Extent and degree of shoreline oiling: Deepwater Horizon oil spill, Gulf of Mexico. PLoS One 8: e65087. doi:65010.61371/journal.pone.0065087.
-
(2013)
PLoS One
, vol.8
-
-
Michel, J.1
Owens, E.H.2
Zengel, S.3
Graham, A.4
Nixon, Z.5
-
19
-
-
84904566799
-
Sand beach treatment studies and field trials conducted during the Deepwater Horizon-Macondo response operation
-
Owens EH, Taylor E, Graham A, Castle RW (2011) Sand beach treatment studies and field trials conducted during the Deepwater Horizon-Macondo response operation. 2011 International Oil Spill Conference, Portland, Oregon: 265.
-
(2011)
2011 International Oil Spill Conference, Portland, Oregon
, pp. 265
-
-
Owens, E.H.1
Taylor, E.2
Graham, A.3
Castle, R.W.4
-
20
-
-
0021561342
-
The role of disturbance in natural communities
-
Sousa WP (1984) The role of disturbance in natural communities. Annu Rev Ecol Syst 15: 353-391.
-
(1984)
Annu Rev Ecol Syst
, vol.15
, pp. 353-391
-
-
Sousa, W.P.1
-
21
-
-
0029660876
-
Sampling to differentiate between pulse and press perturbations
-
Glasby T, Underwood A (1996) Sampling to differentiate between pulse and press perturbations. Environ Monit Assess 42: 241-252.
-
(1996)
Environ Monit Assess
, vol.42
, pp. 241-252
-
-
Glasby, T.1
Underwood, A.2
-
22
-
-
50049126125
-
Resistance, resilience, and redundancy in microbial communities
-
Allison SD, Martiny JBH (2008) Resistance, resilience, and redundancy in microbial communities. Proc Natl Acad Sci USA 105: 11512-11519.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 11512-11519
-
-
Allison, S.D.1
Martiny, J.B.H.2
-
23
-
-
84875883112
-
Fundementals of microbial community resistance and resilience
-
Shade A, Peter H, Allison SD, Baho DL, Berga M, et al. (2012) Fundementals of microbial community resistance and resilience. Front Microbiol 3: 417.
-
(2012)
Front Microbiol
, vol.3
, pp. 417
-
-
Shade, A.1
Peter, H.2
Allison, S.D.3
Baho, D.L.4
Berga, M.5
-
24
-
-
80555156620
-
Remediation technologies for marine oil spills: A critical review and comparative analysis
-
Dave D, Ghaly AE (2011) Remediation technologies for marine oil spills: A critical review and comparative analysis. Am J Environ Sci 7: 423-440.
-
(2011)
Am J Environ Sci
, vol.7
, pp. 423-440
-
-
Dave, D.1
Ghaly, A.E.2
-
25
-
-
84904575890
-
Dauphin Island's beach and barrier island restoration and protection
-
Dixon CR, Douglass SL, Buhring TJ, Thomson G, Collier J (2011) Dauphin Island's beach and barrier island restoration and protection; American Shore & Beach Preservation Association Conference, October 19-21; New Orleans, Louisiana.
-
(2011)
American Shore & Beach Preservation Association Conference, October 19-21; New Orleans, Louisiana
-
-
Dixon, C.R.1
Douglass, S.L.2
Buhring, T.J.3
Thomson, G.4
Collier, J.5
-
27
-
-
84904564831
-
-
US EPA (2010) National List of Beaches. http://water.epa.gov/type/oceb/ beaches/list-index.cfm. 165.
-
(2010)
National List of Beaches
, pp. 165
-
-
-
28
-
-
84867454001
-
High numbers of Vibrio vulnificus in tar balls collected from oiled areas of the north-central Gulf of Mexico following the 2010 BP Deepwater Horizon oil spill
-
Tao Z, Bullard S, Arias C (2011) High numbers of Vibrio vulnificus in tar balls collected from oiled areas of the north-central Gulf of Mexico following the 2010 BP Deepwater Horizon oil spill. Ecohealth 4: 507-511.
-
(2011)
Ecohealth
, vol.4
, pp. 507-511
-
-
Tao, Z.1
Bullard, S.2
Arias, C.3
-
30
-
-
0345579681
-
Grand Isle: A barrier island in the Gulf of Mexico
-
Conatser WE (1971) Grand Isle: A barrier island in the Gulf of Mexico. Geol Soc Am Bull 82: 3049-3068.
-
(1971)
Geol Soc Am Bull
, vol.82
, pp. 3049-3068
-
-
Conatser, W.E.1
-
31
-
-
0004126304
-
-
NOAA Seattle: Office of Response and Restoration, HAZMAT Report 2000-1
-
NOAA (2000) Shoreline Assessment Manual, 3rd edition. Seattle: Office of Response and Restoration, HAZMAT Report 2000-1.
-
(2000)
Shoreline Assessment Manual, 3rd Edition
-
-
-
32
-
-
84889002764
-
Distribution of surficial and buried oil contaminants across sandy beaches along NW Florida and Alabama coasts following the Deepwater Horizon oil spill in 2010
-
Wang P, Roberts TM (2013) Distribution of surficial and buried oil contaminants across sandy beaches along NW Florida and Alabama coasts following the Deepwater Horizon oil spill in 2010. J Coastal Res 29: 144-155.
-
(2013)
J Coastal Res
, vol.29
, pp. 144-155
-
-
Wang, P.1
Roberts, T.M.2
-
33
-
-
2342523541
-
Baseline concentrations of hydrocarbons in barrier-island quartz sand, northeastern Gulf of Mexico
-
Palacas JG, Gerrild PM, Love AH, Roberts AA (1976) Baseline concentrations of hydrocarbons in barrier-island quartz sand, northeastern Gulf of Mexico. Geol 4: 81-84.
-
(1976)
Geol
, vol.4
, pp. 81-84
-
-
Palacas, J.G.1
Gerrild, P.M.2
Love, A.H.3
Roberts, A.A.4
-
34
-
-
0028608323
-
Beach erosion and deposition on Dauphin Island, Alabama, U.S.A
-
Douglass SI (1994) Beach erosion and deposition on Dauphin Island, Alabama, U.S.A. J Coastal Res 16: 306-328.
-
(1994)
J Coastal Res
, vol.16
, pp. 306-328
-
-
Douglass, S.I.1
-
36
-
-
57849100080
-
Historical changes in the Mississippi-Alabama barrier-island chain and the roles of extreme storms, sea level, and human activities
-
Morton RA (2008) Historical changes in the Mississippi-Alabama barrier-island chain and the roles of extreme storms, sea level, and human activities. J Coastal Res 24: 1587-1600.
-
(2008)
J Coastal Res
, vol.24
, pp. 1587-1600
-
-
Morton, R.A.1
-
40
-
-
84904561054
-
-
Louisiana Department of Health and Hospitals, Office of Public Health, Center for Environmental Health, Baton Rouge, LA
-
Louisiana Department of Health and Hospitals (LDHH) (2010) Louisiana BEACH Grant Report 2009 Swimming Season, U.S. Environmental Protection Agency in Partial Fulfillment of Federal Assistance Agreement Number CU-97606401-0, CU-976992-01 and CU-96667101-0 for Development of Coastal Recreation Water Monitoring and Public Notification. Louisiana Department of Health and Hospitals, Office of Public Health, Center for Environmental Health, Baton Rouge, LA. http://new.dhh. louisiana.gov/assets/oph/Center-EH/sanitarian/beach/ 2009AnnualReport-Final.pdf. 118 p.
-
(2010)
Louisiana BEACH Grant Report 2009 Swimming Season, U.S. Environmental Protection Agency in Partial Fulfillment of Federal Assistance Agreement Number CU-97606401-0, CU-976992-01 and CU-96667101-0 for Development of Coastal Recreation Water Monitoring and Public Notification
, pp. 118
-
-
-
42
-
-
84904543222
-
-
Louisiana Department of Health and Hospitals, Office of Public Health, Center for Environmental Health, Baton Rouge, LA
-
Louisiana Department of Health and Hospitals (LDHH) (2012) Louisiana BEACH Grant Report 2011 Swimming Season, U.S. Environmental Protection Agency in Partial Fulfillment of Federal Assistance Agreement Number CU-00F09802-0 for Development of Coastal Recreation Water Monitoring and Public Notification. Louisiana Department of Health and Hospitals, Office of Public Health, Center for Environmental Health, Baton Rouge, LA. http://new.dhh.louisiana.gov/assets/ oph/Center-EH/sanitarian/beach/LA2011AnnualBeachReport.pdf. 110 p.
-
(2012)
Louisiana BEACH Grant Report 2011 Swimming Season, U.S. Environmental Protection Agency in Partial Fulfillment of Federal Assistance Agreement Number CU-00F09802-0 for Development of Coastal Recreation Water Monitoring and Public Notification
, pp. 110
-
-
-
43
-
-
84904542623
-
-
Louisiana Department of Health and Hospitals, Office of Public Health, Center for Environmental Health, Baton Rouge, LA
-
Louisiana Department of Health and Hospitals (LDHH) (2011) Louisiana's Beach Program Quality Assurance Project Plan, U.S. Environmental Protection Agency In Partial Fulfillment of Federal Assistance Agreement Number CU-00F09801-0 for Development of Coastal Recreation Water Monitoring and Public Notification Louisiana Department of Health and Hospitals, Office of Public Health, Center for Environmental Health, Baton Rouge, LA. http://new.dhh. louisiana.gov/assets/oph/Center-EH/sanitarian/beach/LaBeachQAPPJan2011wsig.pdf. 38 p.
-
(2011)
Louisiana's Beach Program Quality Assurance Project Plan, U.S. Environmental Protection Agency in Partial Fulfillment of Federal Assistance Agreement Number CU-00F09801-0 for Development of Coastal Recreation Water Monitoring and Public Notification
, pp. 38
-
-
-
47
-
-
0003505334
-
-
US Environmental Protection Agency, American Public Health Association, the American Water Works Association, and the Water Environmental Federation
-
Clesceri LS, Greenberg AE, Eaton AD (1998) Standard Methods for the Examination of Water and Wastewater, 20th ed.: US Environmental Protection Agency, American Public Health Association, the American Water Works Association, and the Water Environmental Federation.
-
(1998)
Standard Methods for the Examination of Water and Wastewater, 20th Ed.
-
-
Clesceri, L.S.1
Greenberg, A.E.2
Eaton, A.D.3
-
48
-
-
0035084579
-
Loss on ignition as a method for estimating organic and carbonate content in sediments: Reproducibility and comparability of results
-
DOI 10.1023/A:1008119611481
-
Heiri O, Lotter AF, Lemcke G (2001) Loss on ignition as a method for estimating organic and carbonate content in sediments: reproducibility and comparability of results. J Paleolimnol 25: 101-110. (Pubitemid 32235122)
-
(2001)
Journal of Paleolimnology
, vol.25
, Issue.1
, pp. 101-110
-
-
Heiri, O.1
Lotter, A.F.2
Lemcke, G.3
-
49
-
-
0035475557
-
Gradistat: A grain size distribution and statistics package for the analysis of unconsolidated sediments
-
DOI 10.1002/esp.261
-
Blott SJ, Pye K (2001) GRADISTAT: A grain size distribution and statistics package for the analysis of unconsolidated sediments. Earth Surf Proc Land 26: 1237-1248. (Pubitemid 32980826)
-
(2001)
Earth Surface Processes and Landforms
, vol.26
, Issue.11
, pp. 1237-1248
-
-
Blott, S.J.1
Pye, K.2
-
50
-
-
0024638977
-
Simple, rapid method for direct isolation of nucleic acids from aquatic environments
-
Somerville CC, Knight IT, Straube WL, Colwell RR (1989) Simple, rapid method for direct isolation of nucleic acids from aquatic environments. App Environ Microbiol 55: 548-554.
-
(1989)
App Environ Microbiol
, vol.55
, pp. 548-554
-
-
Somerville, C.C.1
Knight, I.T.2
Straube, W.L.3
Colwell, R.R.4
-
52
-
-
51649098690
-
A comparison of methods for total community DNA preservation and extraction from various thermal environments
-
Mitchell K, Takacs-Vesbach C (2008) A comparison of methods for total community DNA preservation and extraction from various thermal environments. J Ind Microbiol Biotechnol 35: 1139-1147.
-
(2008)
J Ind Microbiol Biotechnol
, vol.35
, pp. 1139-1147
-
-
Mitchell, K.1
Takacs-Vesbach, C.2
-
53
-
-
49549107771
-
Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)
-
doi: 110.1186/1471-2180-1188-1125
-
Dowd SE, Callaway TR, Wolcott RD, Sun Y, McKeehan T, et al. (2008) Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP). BMC Microbiol 8: 125, doi: 110.1186/1471-2180-1188-1125.
-
(2008)
BMC Microbiol
, vol.8
, pp. 125
-
-
Dowd, S.E.1
Callaway, T.R.2
Wolcott, R.D.3
Sun, Y.4
McKeehan, T.5
-
54
-
-
58149200948
-
The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
-
Cole JR, Wang Q, Cardenas E, Fish J, Chai B, et al. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-D145.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
-
56
-
-
35148888609
-
Microbial population structures in the deep marine biosphere
-
DOI 10.1126/science.1146689
-
Huber JA, Welch DBM, Morrison HG, Huse SM, Neal PR, et al. (2007) Microbial population structures in the deep marine biosphere. Science 318: 97-100. (Pubitemid 47538040)
-
(2007)
Science
, vol.318
, Issue.5847
, pp. 97-100
-
-
Huber, J.A.1
Mark, W.D.B.2
Morrison, H.G.3
Huse, S.M.4
Neal, P.R.5
Butterfield, D.A.6
Sogin, M.L.7
-
57
-
-
80052300610
-
Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering
-
Sul WJ, Cole JR, de C. Jesus E, Wang Q, Farris RJ, et al. (2011) Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering. Proc Natl Acad Sci USA 108: 14637-14642.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 14637-14642
-
-
Sul, W.J.1
Cole, J.R.2
De Jesus, E.C.3
Wang, Q.4
Farris, R.J.5
-
58
-
-
77955251092
-
Ironing out the wrinkles in the rare biosphere through improved OTU clustering
-
Huse SM, Welch DM, Morrison HG, Sogin ML (2010) Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ Microbiol 12: 1889-1898.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1889-1898
-
-
Huse, S.M.1
Welch, D.M.2
Morrison, H.G.3
Sogin, M.L.4
-
59
-
-
79251565226
-
Removing noise from pyrosequenced amplicons
-
doi:10.1186/1471-2105-1112-1138
-
Quince C, Lanzen A, Davenport RJ, Turnbaugh PJ (2011) Removing noise from pyrosequenced amplicons. BMC Bioinformatics 12: 38, doi:10.1186/1471-2105-1112- 1138.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 38
-
-
Quince, C.1
Lanzen, A.2
Davenport, R.J.3
Turnbaugh, P.J.4
-
60
-
-
67249096511
-
ESPRIT: Estimating species richness using large collections of 16SrRNA pyrosequences
-
M
-
Sun Y, Cai Y, Liu L, Yu F, MFarrell ML, et al. (2009) ESPRIT: estimating species richness using large collections of 16SrRNA pyrosequences. Nucleic Acids Res 37: e76.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Sun, Y.1
Cai, Y.2
Liu, L.3
Yu, F.4
Farrell, M.L.5
-
61
-
-
0035487318
-
Counting the Uncountable: Statistical Approaches to Estimating Microbial Diversity
-
DOI 10.1128/AEM.67.10.4399-4406.2001
-
Hughes JB, Hellmann JJ, Ricketts TH, Bohannan BJM (2001) Counting the uncountable: statistical approaches to estimating microbial diversity. ApplEnviron Microbiol 67: 4399-4406. (Pubitemid 33646064)
-
(2001)
Applied and Environmental Microbiology
, vol.67
, Issue.10
, pp. 4399-4406
-
-
Hughes, J.B.1
Hellmann, J.J.2
Ricketts, T.H.3
Bohannan, B.J.M.4
-
62
-
-
0037314132
-
Using ecological diversity measures with bacterial communities
-
DOI 10.1016/S0168-6496(02)00449-X, PII S016864960200449X
-
Hill TCJ, Walsh KA, Harris JA, Moffett BF (2003) Using ecological diversity measures with bacterial communities. FEMS Microbiol Ecol 43: 1-11. (Pubitemid 36173508)
-
(2003)
FEMS Microbiology Ecology
, vol.43
, Issue.1
, pp. 1-11
-
-
Hill, T.C.J.1
Walsh, K.A.2
Harris, J.A.3
Moffett, B.F.4
-
63
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microb 75: 7537-7541.
-
(2009)
Appl Environ Microb
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
-
64
-
-
0001463548
-
Non-parametric estimation of the number of classes in a population
-
Chao A (1984) Non-parametric estimation of the number of classes in a population. Scand J Stat 11: 265-270.
-
(1984)
Scand J Stat
, vol.11
, pp. 265-270
-
-
Chao, A.1
-
65
-
-
34748886657
-
PAST: Paleontological statistics software package for education and data analysis
-
Hammer O, Harper DAT, Ryan PD (2001) PAST: Paleontological statistics software package for education and data analysis. Palaeontol Electron 4: 1-9.
-
(2001)
Palaeontol Electron
, vol.4
, pp. 1-9
-
-
Hammer, O.1
Harper, D.A.T.2
Ryan, P.D.3
-
66
-
-
0027804103
-
Non-parametric multivariate analyses of changes in community structure
-
Clarke KR (1993) Non-parametric multivariate analyses of changes in community structure. Aust Ecol 18: 117-143.
-
(1993)
Aust Ecol
, vol.18
, pp. 117-143
-
-
Clarke, K.R.1
-
67
-
-
0027332774
-
Putting things in even better order: The advantages of canonical correspondence analysis
-
Palmer MW (1993) Putting things in even better order: The advantages of canonical correspondence analysis. Ecol 74: 2215-2230.
-
(1993)
Ecol
, vol.74
, pp. 2215-2230
-
-
Palmer, M.W.1
-
68
-
-
0042815050
-
Canonical analysis of principal coordinates: A useful method of constrained ordination for ecology
-
Anderson MJ, Willis TJ (2003) Canonical analysis of principle coordinates: A useful method of constrained ordination for ecology. Ecol 84: 511-525. (Pubitemid 36893087)
-
(2003)
Ecology
, vol.84
, Issue.2
, pp. 511-525
-
-
Anderson, M.J.1
Willis, T.J.2
-
69
-
-
35348933745
-
Multivariate analysis in microbial ecology
-
Ramette A (2007) Multivariate analysis in microbial ecology. FEMS Microbiol Ecol 42: 142-160.
-
(2007)
FEMS Microbiol Ecol
, vol.42
, pp. 142-160
-
-
Ramette, A.1
-
70
-
-
70350292688
-
Biodiversity of benthic microbial communities in bioturbated coastal sediments is controlled by geochemical microniches
-
Bertics VJ, Ziebis W (2009) Biodiversity of benthic microbial communities in bioturbated coastal sediments is controlled by geochemical microniches. ISME J 3: 1269-1285.
-
(2009)
ISME J
, vol.3
, pp. 1269-1285
-
-
Bertics, V.J.1
Ziebis, W.2
-
71
-
-
0002154022
-
A new method for non-parametric multivariate analysis of variance
-
Anderson MJ (2001) A new method for non-parametric multivariate analysis of variance. Aust Ecol 26: 32-46.
-
(2001)
Aust Ecol
, vol.26
, pp. 32-46
-
-
Anderson, M.J.1
-
72
-
-
84981759061
-
The relationship between sand size and beach face slope
-
Bascom WN (1959) The relationship between sand size and beach face slope. Trans Am Geophys Union 32: 866-874.
-
(1959)
Trans Am Geophys Union
, vol.32
, pp. 866-874
-
-
Bascom, W.N.1
-
73
-
-
0037530010
-
Grain size distribution and composition of modern dune and beach sediments, Malindi Bay coast, Kenya
-
Abuodha JOZ (2003) Grain size distribution and composition of modern dune and beach sediments, Malindi Bay coast, Kenya. J Afr Earth Sci 36: 41-54.
-
(2003)
J Afr Earth Sci
, vol.36
, pp. 41-54
-
-
Abuodha, J.O.Z.1
-
75
-
-
83655181784
-
Fecal indicators in sand, sand contact, and risk of enteric illness among beachgoers
-
Heaney CD, Sams E, Dufour AP, Brenner KP, Haugland RA, et al. (2012) Fecal indicators in sand, sand contact, and risk of enteric illness among beachgoers. Epidemiol 23: 95-106.
-
(2012)
Epidemiol
, vol.23
, pp. 95-106
-
-
Heaney, C.D.1
Sams, E.2
Dufour, A.P.3
Brenner, K.P.4
Haugland, R.A.5
-
76
-
-
84855958621
-
Defining seasonal marine microbial community dynamics
-
Gilbert JA, Steele JA, Caporaso JG, Steinbruck L, Reeder J, et al. (2012) Defining seasonal marine microbial community dynamics. ISME J 6: 298-308.
-
(2012)
ISME J
, vol.6
, pp. 298-308
-
-
Gilbert, J.A.1
Steele, J.A.2
Caporaso, J.G.3
Steinbruck, L.4
Reeder, J.5
-
77
-
-
0029667757
-
Physical factors in benthic ecology: Effects of changing sand particle size on beach fauna
-
McLachlan A (1996) Physical factors in benthic ecology: effects of changing sand particle size on beach fauna. Mar Ecol Prog Ser 131: 205-217.
-
(1996)
Mar Ecol Prog Ser
, vol.131
, pp. 205-217
-
-
McLachlan, A.1
-
78
-
-
67949105086
-
Time- and sediment depth-related variations in bacterial diversity and community structure in subtidal sands
-
Boer SI, Hedtkamp SIC, van Beusekom JEE, Fuhrman JA, Boetius A, et al. (2009) Time- and sediment depth-related variations in bacterial diversity and community structure in subtidal sands. ISME J 3: 780-791.
-
(2009)
ISME J
, vol.3
, pp. 780-791
-
-
Boer, S.I.1
Hedtkamp, S.I.C.2
Van Beusekom, J.E.E.3
Fuhrman, J.A.4
Boetius, A.5
-
79
-
-
0345148769
-
Grain size and depth constraints on microbial variability in coastal plain subsurface sediments
-
Zhang C, Palumbo AV, Phelps TJ, Beauchamp JJ, Brockman FJ, et al. (1998) Grain size and depth constraints on microbial variability in coastal plain subsurface sediments. Geomicrobiol J 15: 171-185. (Pubitemid 29026478)
-
(1998)
Geomicrobiology Journal
, vol.15
, Issue.3
, pp. 171-185
-
-
Zhang, C.1
Palumbo, A.V.2
Phelps, T.J.3
Johnjbeauchamp4
Brockman, F.J.5
Murray, C.J.6
Parsons, B.S.7
Swift, D.J.P.8
-
80
-
-
0036270789
-
Microbial diversity and function in soil: From genes to ecosystems
-
DOI 10.1016/S1369-5274(02)00324-7
-
Torsvik V, Ovreas L (2002) Microbial diversity and function in soil: from genes to ecosystems. Curr Opin Microbiol 5: 240-245. (Pubitemid 34614934)
-
(2002)
Current Opinion in Microbiology
, vol.5
, Issue.3
, pp. 240-245
-
-
Torsvik, V.1
Ovreas, L.2
-
81
-
-
0001368611
-
Micro-organisms attached to marine and freshwater sand grains
-
Meadows P, Anderson J (1966) Micro-organisms attached to marine and freshwater sand grains. Nature 212: 1059-1060.
-
(1966)
Nature
, vol.212
, pp. 1059-1060
-
-
Meadows, P.1
Anderson, J.2
-
82
-
-
84888823641
-
Effects of full-scale beach renovation on fecal indicator levels in shoreline sand and water
-
Hernandez RJ, Hernandez Y, Jimenez NH, Piggot AM, Klaus JS, et al. (2014) Effects of full-scale beach renovation on fecal indicator levels in shoreline sand and water. Water Res 48: 579-591.
-
(2014)
Water Res
, vol.48
, pp. 579-591
-
-
Hernandez, R.J.1
Hernandez, Y.2
Jimenez, N.H.3
Piggot, A.M.4
Klaus, J.S.5
-
83
-
-
0018005221
-
Vulnerability of coastal environments to oil spill impacts
-
Gundlach ER, Hayes MO (1978) Vulnerability of coastal environments to oil spill impacts. Mar Technol Soc J 12: 18-27. (Pubitemid 9098400)
-
(1978)
Marine Technology Society Journal
, vol.12
, Issue.4
, pp. 18-27
-
-
Gundlach, E.R.1
Hayes, M.O.2
-
84
-
-
34547218739
-
-
NOAA Technical Memorandum NOS OR&R 11
-
Petersen J, Michel J, Zengel S, White M, Lord C, et al. (2002) Environmental Sensitivity Index Guidelines version 3.0. NOAA Technical Memorandum NOS OR&R 11. 192 p.
-
(2002)
Environmental Sensitivity Index Guidelines Version 3.0
, pp. 192
-
-
Petersen, J.1
Michel, J.2
Zengel, S.3
White, M.4
Lord, C.5
-
85
-
-
82755189279
-
Impacts of diverted freshwater on dissolved organic matter and microbial communities in Barataria Bay, Louisiana, U.S.A
-
Bianchi TS, Cook RL, Perdue EM, Kolic PE, Green N, et al. (2011) Impacts of diverted freshwater on dissolved organic matter and microbial communities in Barataria Bay, Louisiana, U.S.A. Mar Environ Res 72: 248-257.
-
(2011)
Mar Environ Res
, vol.72
, pp. 248-257
-
-
Bianchi, T.S.1
Cook, R.L.2
Perdue, E.M.3
Kolic, P.E.4
Green, N.5
-
86
-
-
84904557770
-
A survey of alterations in microbial community diversity in marine sediments in response to oil from the Deepwater Horizon spill: Northern Gulf of Mexico shoreline, Texas to Florida: A preliminary report to the U.S. Coast Guard, Part 1
-
Lisle J (2011) A survey of alterations in microbial community diversity in marine sediments in response to oil from the Deepwater Horizon spill: northern Gulf of Mexico shoreline, Texas to Florida: a preliminary report to the U.S. Coast Guard, Part 1. USGS Open-File Report 2011-1059. 28 p.
-
(2011)
USGS Open-File Report 2011-1059
, pp. 28
-
-
Lisle, J.1
-
87
-
-
84904536292
-
A survey of microbial community diversity in marine sediments impacted by petroleum hydrocarbons from the Gulf of Mexico and Atlantic shorelines, Texas to Florida: A preliminary report to the U.S. Coast Guard, Part 2
-
Lisle J, Stellick S (2011) A survey of microbial community diversity in marine sediments impacted by petroleum hydrocarbons from the Gulf of Mexico and Atlantic shorelines, Texas to Florida: A preliminary report to the U.S. Coast Guard, Part 2. USGS Open-File Report 2011-115.
-
(2011)
USGS Open-File Report 2011-115
-
-
Lisle, J.1
Stellick, S.2
-
88
-
-
84855964551
-
Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume
-
Lu Z, Deng Y, Van Nostrand JD, He Z, Voordeckers J, et al. (2011) Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume ISME J 6: 451-460.
-
(2011)
ISME J
, vol.6
, pp. 451-460
-
-
Lu, Z.1
Deng, Y.2
Van Nostrand, J.D.3
He, Z.4
Voordeckers, J.5
-
89
-
-
84864020539
-
Microbial community analysis of a coastal salt marsh affected by the Deepwater Horizon oil spill
-
Beazley MJ, Martinez RJ, Rajan S, Powell J, Piceno YM, et al. (2012) Microbial community analysis of a coastal salt marsh affected by the Deepwater Horizon oil spill. PloS One 7: e41305.
-
(2012)
PloS One
, vol.7
-
-
Beazley, M.J.1
Martinez, R.J.2
Rajan, S.3
Powell, J.4
Piceno, Y.M.5
-
90
-
-
84875868629
-
Microbial reponse to the MC-252 oil and Corexit 9500 in the Gulf of Mexico
-
doi: 310.3389/fmicb.2012.00357
-
Chakraborty R, Borglin SE, Dubinsky EA, Andersen GL, Hazen TC (2012) Microbial reponse to the MC-252 oil and Corexit 9500 in the Gulf of Mexico. Front Microbiol 3: 357: doi: 310.3389/fmicb.2012.00357.
-
(2012)
Front Microbiol
, vol.3
, pp. 357
-
-
Chakraborty, R.1
Borglin, S.E.2
Dubinsky, E.A.3
Andersen, G.L.4
Hazen, T.C.5
-
91
-
-
84862185045
-
Seasonal monitoring of hydrocarbon degraders in Alabama marine ecosystems following the Deepwater Horizon oil spill
-
Horel A, Mortazavi B, Sobecky P (2012) Seasonal monitoring of hydrocarbon degraders in Alabama marine ecosystems following the Deepwater Horizon oil spill. Water Air Soil Poll 223: 3145-3154.
-
(2012)
Water Air Soil Poll
, vol.223
, pp. 3145-3154
-
-
Horel, A.1
Mortazavi, B.2
Sobecky, P.3
-
92
-
-
84859837701
-
Responses of microbial community from northern Gulf of Mexico sandy sediments following exposure to Deepwater Horizon crude oil
-
Horel A, Mortazavi B, Sobecky PA (2012) Responses of microbial community from northern Gulf of Mexico sandy sediments following exposure to Deepwater Horizon crude oil. Environ Toxicol Chem 31: 1004-1011.
-
(2012)
Environ Toxicol Chem
, vol.31
, pp. 1004-1011
-
-
Horel, A.1
Mortazavi, B.2
Sobecky, P.A.3
-
93
-
-
84865318505
-
Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
-
Mason OU, Hazen TC, Borglin S, Chain PS, Dubinsky EA, et al. (2012) Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill. ISME J 6: 1715-1727.
-
(2012)
ISME J
, vol.6
, pp. 1715-1727
-
-
Mason, O.U.1
Hazen, T.C.2
Borglin, S.3
Chain, P.S.4
Dubinsky, E.A.5
-
94
-
-
84886695738
-
Microbial community analysis of Deepwater Horizon oil-spill impacted sites along the Gulf coast using functional and phylogenetic markers
-
Looper JK, Cotto A, Kim B-Y, Lee M-K, Liles MR, et al. (2013) Microbial community analysis of Deepwater Horizon oil-spill impacted sites along the Gulf coast using functional and phylogenetic markers. Environ Sci Proc Impact 5: 2068-2079.
-
(2013)
Environ Sci Proc Impact
, vol.5
, pp. 2068-2079
-
-
Looper, J.K.1
Cotto, A.2
Kim, B.-Y.3
Lee, M.-K.4
Liles, M.R.5
-
95
-
-
84872608173
-
Intrinsic rates of petroleum hydrocarbon biodegradation in Gulf of Mexico intertidal sandy sediments and its enhancement by organic substrates
-
Mortazavi B, Horel A, Beazley MJ, Sobecky PA (2013) Intrinsic rates of petroleum hydrocarbon biodegradation in Gulf of Mexico intertidal sandy sediments and its enhancement by organic substrates. J Hazard Mater 244-245: 537-544.
-
(2013)
J Hazard Mater
, vol.244-245
, pp. 537-544
-
-
Mortazavi, B.1
Horel, A.2
Beazley, M.J.3
Sobecky, P.A.4
-
96
-
-
81355122650
-
Relationships between sand and water quality at recreational beaches
-
Phillips MC, Solo-Gabriele HM, Piggot AM, Klaus JS, Zhang Y (2011) Relationships between sand and water quality at recreational beaches. Water Res 45: 6763-6769.
-
(2011)
Water Res
, vol.45
, pp. 6763-6769
-
-
Phillips, M.C.1
Solo-Gabriele, H.M.2
Piggot, A.M.3
Klaus, J.S.4
Zhang, Y.5
-
97
-
-
84866149275
-
Relationship between enterococcal levels and sediment biofilms at recreational beaches in South Florida
-
Piggot AM, Klaus JS, Johnson S, Phillips MC, Solo-Gabriele HM (2012) Relationship between enterococcal levels and sediment biofilms at recreational beaches in South Florida. Appl Environ Microbiol 78: 5973-5982.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 5973-5982
-
-
Piggot, A.M.1
Klaus, J.S.2
Johnson, S.3
Phillips, M.C.4
Solo-Gabriele, H.M.5
-
98
-
-
78651381286
-
Bacteria in beach sands: An emerging challenge in protecting coastal water quality and bather health
-
Halliday E, Gast RJ (2011) Bacteria in beach sands: An emerging challenge in protecting coastal water quality and bather health. Environ Sci Technol 45: 370-379.
-
(2011)
Environ Sci Technol
, vol.45
, pp. 370-379
-
-
Halliday, E.1
Gast, R.J.2
-
99
-
-
0033025652
-
Presence of campylobacter and salmonella in sand from bathing beaches
-
DOI 10.1017/S0950268898001915
-
Bolton FJ, Surman SB, Martin K, Wareing DRA, Humphrey TJ (1999) Presence of Campylobacter and Salmonella in sand from bathing beaches. Epidemiol Inf 122: 7-13. (Pubitemid 29080397)
-
(1999)
Epidemiology and Infection
, vol.122
, Issue.1
, pp. 7-13
-
-
Bolton, F.J.1
Surman, S.B.2
Martin, K.3
Wareing, D.R.A.4
Humphrey, T.J.5
-
100
-
-
78650051882
-
Oceanospirillales ord. nov.
-
Brenner DJ, Krieg NR, Staley JT, Garrity GM, Boone DR et al., editors. Springer US
-
Garrity GM, Bell JA, Lilburn T (2005) Oceanospirillales ord. nov. In: Brenner DJ, Krieg NR, Staley JT, Garrity GM, Boone DR et al., editors. Bergey's Manual (R) of Systematic Bacteriology Volume Two: The Proteobacteria, Part B The Gammaproteobacteria: Springer US. 270-323.
-
(2005)
Bergey's Manual (R) of Systematic Bacteriology Volume Two: The Proteobacteria, Part B the Gammaproteobacteria
, pp. 270-323
-
-
Garrity, G.M.1
Bell, J.A.2
Lilburn, T.3
-
101
-
-
77956299931
-
Deep-sea oil plume enriches indigenous oil-degrading bacteria
-
Hazen TC, Dubinsky EA, DeSantis TZ, Andersen GL, Piceno YM, et al. (2010) Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science 330: 204-208.
-
(2010)
Science
, vol.330
, pp. 204-208
-
-
Hazen, T.C.1
Dubinsky, E.A.2
DeSantis, T.Z.3
Andersen, G.L.4
Piceno, Y.M.5
-
102
-
-
36849002602
-
Chromatiales ord. nov.
-
Brenner DJ, Krieg NR, Staley JT, Garrity GM, Boone DR et al., editors. Springer US
-
Imhoff JF (2005) Chromatiales ord. nov. In: Brenner DJ, Krieg NR, Staley JT, Garrity GM, Boone DR et al., editors. Bergey's Manual (R) of Systematic Bacteriology Volume Two: The Proteobacteria, Part B The Gammaproteobacteria: Springer US. 1-59.
-
(2005)
Bergey's Manual (R) of Systematic Bacteriology Volume Two: The Proteobacteria, Part B the Gammaproteobacteria
, pp. 1-59
-
-
Imhoff, J.F.1
-
104
-
-
84858668887
-
Artificial modifications of the coast in response to the Deepwater Horizon oil spill: Quick solutions or long-term liabilities
-
doi:http://dx.doi.org/10.1890/100151
-
Martinez ML, Feagin RA, Yeager KM, Day J, Costanza R, et al. (2011) Artificial modifications of the coast in response to the Deepwater Horizon oil spill: quick solutions or long-term liabilities. Front Ecol Environ doi:http://dx.doi.org/10.1890/100151.
-
(2011)
Front Ecol Environ
-
-
Martinez, M.L.1
Feagin, R.A.2
Yeager, K.M.3
Day, J.4
Costanza, R.5
-
105
-
-
0242629042
-
Catastrophic regime shifts in ecosystems: Linking theory to observation
-
Scheffer M, Carpenter SR (2003) Catastrophic regime shifts in ecosystems: linking theory to observation. Trends Ecol Evol 18.
-
(2003)
Trends Ecol Evol
, pp. 18
-
-
Scheffer, M.1
Carpenter, S.R.2
-
106
-
-
2142708264
-
Regime shifts: Can ecological theory illuminate the mechanisms?
-
DOI 10.1016/j.pocean.2004.02.013, PII S0079661104000321
-
Collie JS, Richardon K, Steele JH (2004) Regime shifts: Can ecological theory illuminate the mechanisms? Prog Oceanogr 60: 281-302. (Pubitemid 38537090)
-
(2004)
Progress in Oceanography
, vol.60
, Issue.2-4
, pp. 281-302
-
-
Collie, J.S.1
Richardson, K.2
Steele, J.H.3
|