-
1
-
-
0036330894
-
Genome sequence of Yersinia pestis KIM
-
Deng W, Burland V, Plunkett G, III, Boutin A, Mayhew GF, Liss P, Perna NT, Rose DJ, Mau B, Zhou S, Schwartz DC, Fetherston JD, Lindler LE, Brubaker RR, Plano GV, Straley SC, McDonough KA, Nilles ML, Matson JS, Blattner FR, Perry RD. 2002. Genome sequence of Yersinia pestis KIM. J. Bacteriol. 184:4601-4611.
-
(2002)
J. Bacteriol
, vol.184
, pp. 4601-4611
-
-
Deng, W.1
Burland, V.2
Plunkett, G.3
Boutin, A.4
Mayhew, G.F.5
Liss, P.6
Perna, N.T.7
Rose, D.J.8
Mau, B.9
Zhou, S.10
Schwartz, D.C.11
Fetherston, J.D.12
Lindler, L.E.13
Brubaker, R.R.14
Plano, G.V.15
Straley, S.C.16
McDonough, K.A.17
Nilles, M.L.18
Matson, J.S.19
Blattner, F.R.20
Perry, R.D.21
more..
-
2
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat. Methods 9:357-359.
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
3
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup. 2009. The sequence alignment/map format and SAMtools. Bioinformatics 25:2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
5
-
-
40549120596
-
The RAST server: rapid annotations using subsystems technology
-
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
DeJongh, M.4
Disz, T.5
Edwards, R.A.6
Formsma, K.7
Gerdes, S.8
Glass, E.M.9
Kubal, M.10
Meyer, F.11
Olsen, G.J.12
Olson, R.13
Osterman, A.L.14
Overbeek, R.A.15
McNeil, L.K.16
Paarmann, D.17
Paczian, T.18
Parrello, B.19
Pusch, G.D.20
Reich, C.21
Stevens, R.22
Vassieva, O.23
Vonstein, V.24
Wilke, A.25
Zagnitko, O.26
more..
-
6
-
-
0035807385
-
Genome sequence of Yersinia pestis, the causative agent of plague
-
Parkhill J, Wren BW, Thomson NR, Titball RW, Holden MT, Prentice MB, Sebaihia M, James KD, Churcher C, Mungall KL, Baker S, Basham D, Bentley SD, Brooks K, Cerdeño-Tárraga AM, Chillingworth T, Cronin A, Davies RM, Davis P, Dougan G, Feltwell T, Hamlin N, Holroyd S, Jagels K, Karlyshev AV, Leather S, Moule S, Oyston PC, Quail M, Rutherford K, Simmonds M, Skelton J, Stevens K, Whitehead S, Barrell BG. 2001. Genome sequence of Yersinia pestis, the causative agent of plague. Nature 413:523-527.
-
(2001)
Nature
, vol.413
, pp. 523-527
-
-
Parkhill, J.1
Wren, B.W.2
Thomson, N.R.3
Titball, R.W.4
Holden, M.T.5
Prentice, M.B.6
Sebaihia, M.7
James, K.D.8
Churcher, C.9
Mungall, K.L.10
Baker, S.11
Basham, D.12
Bentley, S.D.13
Brooks, K.14
Cerdeño-Tárraga, A.M.15
Chillingworth, T.16
Cronin, A.17
Davies, R.M.18
Davis, P.19
Dougan, G.20
Feltwell, T.21
Hamlin, N.22
Holroyd, S.23
Jagels, K.24
Karlyshev, A.V.25
Leather, S.26
Moule, S.27
Oyston, P.C.28
Quail, M.29
Rutherford, K.30
Simmonds, M.31
Skelton, J.32
Stevens, K.33
Whitehead, S.34
Barrell, B.G.35
more..
-
7
-
-
18744372450
-
SNPsFinder-a web-based application for genome-wide discovery of single nucleotide polymorphisms in microbial genomes
-
Song J, Xu Y, White S, Miller KW, Wolinsky M. 2005. SNPsFinder-a web-based application for genome-wide discovery of single nucleotide polymorphisms in microbial genomes. Bioinformatics 21:2083-2084.
-
(2005)
Bioinformatics
, vol.21
, pp. 2083-2084
-
-
Song, J.1
Xu, Y.2
White, S.3
Miller, K.W.4
Wolinsky, M.5
-
9
-
-
14244257879
-
Detection of 5'-and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli
-
Kawano M, Reynolds AA, Miranda-Rios J, Storz G. 2005. Detection of 5'-and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli. Nucleic Acids Res. 33:1040-1050.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1040-1050
-
-
Kawano, M.1
Reynolds, A.A.2
Miranda-Rios, J.3
Storz, G.4
-
10
-
-
0036157034
-
Genetic variability of Yersinia pestis isolates as predicted by PCR-based IS100 genotyping and analysis of structural genes encoding glycerol-3-phosphate dehydrogenase (glpD)
-
Motin VL, Georgescu AM, Elliott JM, Hu P, Worsham PL, Ott LL, Slezak TR, Sokhansanj BA, Regala WM, Brubaker RR, Garcia E. 2002. Genetic variability of Yersinia pestis isolates as predicted by PCR-based IS100 genotyping and analysis of structural genes encoding glycerol-3-phosphate dehydrogenase (glpD). J. Bacteriol. 184:1019-1027.
-
(2002)
J. Bacteriol
, vol.184
, pp. 1019-1027
-
-
Motin, V.L.1
Georgescu, A.M.2
Elliott, J.M.3
Hu, P.4
Worsham, P.L.5
Ott, L.L.6
Slezak, T.R.7
Sokhansanj, B.A.8
Regala, W.M.9
Brubaker, R.R.10
Garcia, E.11
-
11
-
-
79953868820
-
Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing
-
Cummings CA, Bormann Chung CA, Fang R, Barker M, Brzoska P, Williamson PC, Beaudry J, Matthews M, Schupp J, Wagner DM, Birdsell D, Vogler AJ, Furtado MR, Keim P, Budowle B. 2010. Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing. Investig. Genet. 1:5.
-
(2010)
Investig. Genet
, vol.1
, pp. 5
-
-
Cummings, C.A.1
Bormann Chung, C.A.2
Fang, R.3
Barker, M.4
Brzoska, P.5
Williamson, P.C.6
Beaudry, J.7
Matthews, M.8
Schupp, J.9
Wagner, D.M.10
Birdsell, D.11
Vogler, A.J.12
Furtado, M.R.13
Keim, P.14
Budowle, B.15
-
12
-
-
78649470145
-
Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity
-
Morelli G, Song Y, Mazzoni CJ, Eppinger M, Roumagnac P, Wagner DM, Feldkamp M, Kusecek B, Vogler AJ, Li Y, Cui Y, Thomson NR, Jombart T, Leblois R, Lichtner P, Rahalison L, Petersen JM, Balloux F, Keim P, Wirth T, Ravel J, Yang R, Carniel E, Achtman M. 2010. Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nat. Genet. 42:1140-1143.
-
(2010)
Nat. Genet
, vol.42
, pp. 1140-1143
-
-
Morelli, G.1
Song, Y.2
Mazzoni, C.J.3
Eppinger, M.4
Roumagnac, P.5
Wagner, D.M.6
Feldkamp, M.7
Kusecek, B.8
Vogler, A.J.9
Li, Y.10
Cui, Y.11
Thomson, N.R.12
Jombart, T.13
Leblois, R.14
Lichtner, P.15
Rahalison, L.16
Petersen, J.M.17
Balloux, F.18
Keim, P.19
Wirth, T.20
Ravel, J.21
Yang, R.22
Carniel, E.23
Achtman, M.24
more..
|