Identification of Fungal Pathogens by Visible Microarray System in Combination with Isothermal Gene Amplification

Mycopathologia

Volumn 178, Issue 1-2, 2014, Pages 11-26

  Sakai, Kanae ^a,c   Trabasso, Plinio ^b,c   Moretti, Maria Luiza ^b,c   Mikami, Yuzuru ^a,c   Kamei, Katsuhiko ^a,c   Gonoi, Tohru ^a,c  

^a CHIBA UNIVERSITY   (Japan)

^b UNIVERSITY OF CAMPINAS   (Brazil)

^c JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

Diagnosis; Fungal infection; Isothermal amplification; Microarray

Indexed keywords

FUNGI;

FUNGAL DNA; RIBOSOMAL SPACER DNA;

CLASSIFICATION; FUNGUS; GENETICS; HUMAN; ISOLATION AND PURIFICATION; MICROARRAY ANALYSIS; MICROBIOLOGY; MOLECULAR DIAGNOSIS; MYCOSES; NUCLEIC ACID AMPLIFICATION; PROCEDURES; SENSITIVITY AND SPECIFICITY;

DNA, FUNGAL; DNA, RIBOSOMAL SPACER; FUNGI; HUMANS; MICROARRAY ANALYSIS; MOLECULAR DIAGNOSTIC TECHNIQUES; MYCOSES; NUCLEIC ACID AMPLIFICATION TECHNIQUES; SENSITIVITY AND SPECIFICITY;

EID: 84904396031     PISSN: 0301486X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11046-014-9756-2     Document Type: Article

References (21)

1. Kume H, Yamazaki T, Togano T. Epidemiology of visceral mycoses in autopsy cases in Japan: comparison of the data from 1989, 1993, 1997, 2001, 2005 and 2007 in annual of pathological autopsy cases in Japan. Med Mycol J. 2011;52: 117-27.
2. Fujita S. Serologic diagnosis of fungal infections. Nihon Rinsho. 2008;66: 2313-8.
3. Su C, Lei L, Duan Y, Zhang KQ, Yang J. Culture-independent methods for studying environmental microorganisms: methods, application, and perspective. Appl Microbiol Biotechnol. 2012;93: 993-1003.
4. Hong BX, Jiang LF, Hu YS, Fang DY, Guo HY. Application of oligonucleotide array technology for the rapid detection of pathogenic bacteria of foodborne infections. J Microbiol Methods. 2004;58: 403-11.
5. Spiess B, Seifarth W, Hummel M, et al. DNA microarray-based detection and identification of fungal pathogens in clinical samples from neutropenic patients. J Clin Microbiol. 2007;45: 3743-53.
6. Sato T, Takayanagi A, Nagao K, et al. Simple PCR-based DNA microarray system to identify human pathogenic fungi in skin. J Clin Microbiol. 2010;48: 2357-64.
7. Hung WT, Su SL, Shiu LY, Chang TC. Rapid identification of allergenic and pathogenic molds in environmental air by an oligonucleotide array. BMC Infect Dis. 2011;11: 91-9.
8. Sakai T, Kohzaki K, Watanabe A, Tsuneoka H, Shimadzu M. Use of DNA microarray analysis in diagnosis of bacterial and fungal endophthalmitis. Clin Ophthalmol. 2012;6: 321-6.
9. Vincent M, Xu Y, Kong H. Helicase-dependent isothermal DNA amplification. EMBO Rep. 2004;5: 795-800.
10. Gill P, Ghaemi A. Nucleic acid isothermal amplification technologies: a review. Nucleosides Nucleotides Nucleic Acids. 2008;27: 224-43.
11. Mori Y, Notomi T. Loop-mediated isothermal amplification (LAMP): a rapid, accurate, and cost-effective diagnostic method for infectious diseases. J Infect Chemother. 2009;15: 62-9.
12. Uemori T, Mukai H, Takeda O, et al. Investigation of the molecular mechanism of ICAN, a novel gene amplification method. J Biochem. 2007;142: 283-92.
13. Euler M, Wang Y, Otto P, et al. Recombinase polymerase amplification assay for rapid detection of Francisella tularensis. J Clin Microbiol. 2012;50: 2234-8.
14. Kimura N. One-step immobilization of poly(dT)-modified DNA onto non-modified plastic substrates by UV irradiation for microarrays. Biochem Biophys Res Commun. 2006;347: 477-84.
15. White TJ, Bruns T, Lee S, Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, editors. PCR Protocols: a guide to methods and applications. San Diego: Academic Press Inc.; 1990. p. 315-22.
16. Rubtsova MY, Ulyashova MM, Edelstein MV, Egorov AM. Oligonucleotide microarrays with horseradish peroxidase-based detection for the identification of extended-spectrum β-lactamases. Biosens Bioelectron. 2010;26: 1252-60.
17. Huguenin A, Moutte L, Renois F, et al. Broad respiratory virus detection in infants hospitalized for bronchiolitis by use of a multiplex RT-PCR DNA microarray system. J Med Virol. 2012;84: 979-85.
18. Hamid B, Sybren GDH, Ilse C, et al. In vitro activities of eight drugs against 70 clinical and environmental isolates of Alternaria species. J Antimicrob Chemother. 2009;63: 1295-7.
19. Wang SB, Li LY, Yu J. Identification and susceptibility of Rhizomucor spp. isolated from patients with cutaneous zygomycosis in China. Med Mycol. 2011;49: 799-805.
20. Vitale RG, de Hoog GS, Schwarz P, et al. Antifungal susceptibility and phylogeny of opportunistic members of the order mucorales. J Clin Microbiol. 2012;50: 66-75.
21. Guo LN, Xiano M, Kong F, et al. Tree-locus identification, genotyping, and antifungal susceptibilities of medically important Trichosporon species from China. J Clin Microbiol. 2011;49(11): 3805-11.