Neuronal circuits and computations: Pattern decorrelation in the olfactory bulb

FEBS Letters

Volumn 588, Issue 15, 2014, Pages 2504-2513

  Friedrich, Rainer W ^a,b   Wiechert, Martin T ^c,d  

^a FRIEDRICH MIESCHER INSTITUTE FOR BIOMEDICAL RESEARCH   (Switzerland)

^b UNIVERSITY OF BASEL   (Switzerland)

^c INSTITUT PASTEUR   (France)

^d CNRS   (France)

Author keywords

Activity pattern; Behavior; Computation; Decorrelation; Olfactory bulb; Zebrafish

Indexed keywords

BRAIN REGION; CELL INTERACTION; CLASSIFICATION; HUMAN; MITRAL CELL; NERVE CELL NETWORK; NONHUMAN; ODOR; OLFACTORY BULB; OLFACTORY DISCRIMINATION; OLFACTORY GLOMERULUS; OLFACTORY NERVOUS SYSTEM; PATTERN DECORRELATION; PRIORITY JOURNAL; REVIEW; STATISTICAL CONCEPTS; ZEBRA FISH;

DANIO RERIO;

ACTIVITY PATTERN; BEHAVIOR; COMPUTATION; DECORRELATION; OLFACTORY BULB; ZEBRAFISH;

ANIMALS; EVOKED POTENTIALS, SOMATOSENSORY; NERVE NET; NEURONS; OLFACTORY BULB; SMELL; ZEBRAFISH;

EID: 84904253278     PISSN: 00145793     EISSN: 18733468     Source Type: Journal    
DOI: 10.1016/j.febslet.2014.05.055     Document Type: Review

References (91)

1. S.Y. Takemura et al. A visual motion detection circuit suggested by Drosophila connectomics Nature 500 2013 175 181
2. G.M. Shepherd The Synaptic Organization of the Brain 2004 Oxford University Press New York
3. W. Maass, P. Joshi, and E.D. Sontag Computational aspects of feedback in neural circuits PLoS Comput. Biol. 3 2007 e165
4. D.J. Heeger Normalization of cell responses in cat striate cortex Vis. Neurosci. 9 1992 181 197
5. M. Carandini, and D.J. Heeger Normalization as a canonical neural computation Nat. Rev. Neurosci. 13 2011 51 62
6. K.D. Harris, and T.D. Mrsic-Flogel Cortical connectivity and sensory coding Nature 503 2013 51 58
7. B.L. McNaughton, and R.G.M. Morris Hippocampal synaptic enhancement and information storage within a distributed memory system Trends Neurosci. 10 1987 408 415
8. J.G. White, E. Southgate, J.N. Thomson, and S. Brenner The structure of the nervous system of the nematode Caenorhabditis elegans Philos. Trans. R. Soc. London B Biol. Sci. 314 1986 1 340
9. K.L. Briggman, M. Helmstaedter, and W. Denk Wiring specificity in the direction-selectivity circuit of the retina Nature 471 2011 183 188
10. M. Helmstaedter, K.L. Briggman, S.C. Turaga, V. Jain, H.S. Seung, and W. Denk Connectomic reconstruction of the inner plexiform layer in the mouse retina Nature 500 2013 168 174
11. J.J. Hopfield Neural networks and physical systems with emergent collective computational abilities Proc. Natl. Acad. Sci. USA 79 1982 2554 2558
12. V. Itskov, and L.F. Abbott Pattern capacity of a perceptron for sparse discrimination Phys. Rev. Lett. 101 2008 018101
13. R.M. French Catastrophic forgetting in connectionist networks Trends Cogn. Sci. 3 1999 128 135
14. D. Marr A theory of cerebellar cortex J. Physiol. 202 1969 437 470
15. P. Kanerva Sparse Distributed Memory 1988 MIT Press Cambridge, MA
16. D. Marr A theory for cerebral neocortex Proc. R. Soc. London B Biol. Sci. 176 1970 161 234
17. T. Kohonen Self-organization and Associative Memory 1984 Springer Berlin
18. J.K. Leutgeb, S. Leutgeb, M.B. Moser, and E.I. Moser Pattern separation in the dentate gyrus and CA3 of the hippocampus Science 315 2007 961 966
19. T.J. McHugh et al. Dentate gyrus NMDA receptors mediate rapid pattern separation in the hippocampal network Science 317 2007 94 99
20. E.T. Rolls, and R.P. Kesner A computational theory of hippocampal function, and empirical tests of the theory Prog. Neurobiol. 79 2006 1 48
21. A. Treves, A. Tashiro, M.E. Witter, and E.I. Moser What is the mammalian dentate gyrus good for? Neuroscience 154 2008 1155 1172
22. R.W. Friedrich Information processing in the olfactory system of zebrafish Annu. Rev. Neurosci. 36 2013 383 402
23. R.W. Friedrich, C.J. Habermann, and G. Laurent Multiplexing using synchrony in the zebrafish olfactory bulb Nat. Neurosci. 7 2004 862 871
24. R.W. Friedrich, and G. Laurent Dynamic optimization of odor representations in the olfactory bulb by slow temporal patterning of mitral cell activity Science 291 2001 889 894
25. R.W. Friedrich, and G. Laurent Dynamics of olfactory bulb input and output activity during odor stimulation in zebrafish J. Neurophysiol. 91 2004 2658 2669
26. J. Niessing, and R.W. Friedrich Olfactory pattern classification by discrete neuronal network states Nature 465 2010 47 52
27. D.A. Wilson, and R.M. Sullivan Cortical processing of odor objects Neuron 72 2011 506 519
28. L.B. Haberly Parallel-distributed processing in olfactory cortex: new insights from morphological and physiological analysis of neuronal circuitry Chem. Senses 26 2001 551 576
29. M.E. Hasselmo, M.A. Wilson, B.P. Anderson, and J.M. Bower Associative memory function in piriform (olfactory) cortex: computational modeling and neuropharmacology Cold Spring Harb. Symp. Quant. Biol. 55 1990 599 610
30. L.B. Buck The molecular architecture of odor and pheromone sensing in mammals Cell 100 2000 611 618
31. R.W. Friedrich, and S.I. Korsching Combinatorial and chemotopic odorant coding in the zebrafish olfactory bulb visualized by optical imaging Neuron 18 1997 737 752
32. G.M. Shepherd, W.R. Chen, and C.A. Greer Olfactory bulb G.M. Shepherd, The Synaptic Organization of the Brain 2004 Oxford University Press Oxford 165 216
33. K. Kosaka, and T. Kosaka Synaptic organization of the glomerulus in the main olfactory bulb: compartments of the glomerulus and heterogeneity of the periglomerular cells Anat. Sci. Int. 80 2005 80 90
34. E. Kiyokage et al. Molecular identity of periglomerular and short axon cells J. Neurosci. 30 2010 1185 1196
35. P. Zhu, T. Frank, and R.W. Friedrich Equalization of odor representations by a network of electrically coupled inhibitory interneurons Nat. Neurosci. 16 2013 1678 1686
36. G. Laurent Olfactory network dynamics and the coding of multidimensional signals Nat. Rev. Neurosci. 3 2002 884 895
37. P. Zhu, O. Fajardo, J. Shum, Y.-P. Zhang Schärer, and R.W. Friedrich High-resolution optical control of spatiotemporal neuronal activity patterns in zebrafish using a digital micromirror device Nat. Protoc. 7 2012 1410 1425
38. R.W. Friedrich, G.A. Jacobson, and P. Zhu Circuit neuroscience in zebrafish Curr. Biol. 20 2010 R371 R381
39. R.W. Friedrich, C. Genoud, and A.A. Wanner Analyzing the structure and function of neuronal circuits in zebrafish Front. Neural Circuits 7 2013 71
40. R.W. Friedrich, and S.I. Korsching Chemotopic, combinatorial and non-combinatorial odorant representations in the olfactory bulb revealed using a voltage-sensitive axon tracer J. Neurosci. 18 1998 9977 9988
41. M. Wachowiak, and L.B. Cohen Representation of odorants by receptor neuron input to the mouse olfactory bulb Neuron 32 2001 723 735
42. H. Spors, M. Wachowiak, L.B. Cohen, and R.W. Friedrich Temporal dynamics and latency patterns of receptor neuron input to the olfactory bulb J. Neurosci. 26 2006 1247 1259
43. R.W. Friedrich, E. Yaksi, B. Judkewitz, and M.T. Wiechert Processing of odor representations by neuronal circuits in the olfactory bulb Ann. NY Acad. Sci. 1170 2009 293 297
44. E. Yaksi, B. Judkewitz, and R.W. Friedrich Topological reorganization of odor representations in the olfactory bulb PLoS Biol. 5 2007 e178
45. 2+ imaging Nat. Methods 3 2006 377 383
46. R. Tabor, E. Yaksi, J.M. Weislogel, and R.W. Friedrich Processing of odor mixtures in the zebrafish olfactory bulb J. Neurosci. 24 2004 6611 6620
47. F. Blumhagen, P. Zhu, J. Shum, Y.-P. Zhang Schärer, E. Yaksi, K. Deisseroth, and R.W. Friedrich Neuronal filtering of multiplexed odour representations Nature 479 2011 493 498
48. E. Yaksi, F. von Saint Paul, J. Niessing, S.T. Bundschuh, and R.W. Friedrich Transformation of odor representations in target areas of the olfactory bulb Nat. Neurosci. 12 2009 474 482
49. R. Tabor, E. Yaksi, and R.W. Friedrich Multiple functions of GABA(A) and GABA(B) receptors during pattern processing in the zebrafish olfactory bulb Eur. J. Neurosci. 28 2008 117 127
50. T. Mueller, Z. Dong, M.A. Berberoglu, and S. Guo The dorsal pallium in zebrafish, Danio rerio (Cyprinidae, Teleostei) Brain Res. 1381 2011 95 105
51. M.S. Lewicki Efficient coding of natural sounds Nat. Neurosci. 5 2002 356 363
52. B.A. Olshausen, and D.J. Field Emergence of simple-cell receptive field properties by learning a sparse code for natural images Nature 381 1996 607 609
53. A.J. Bell, and T.J. Sejnowski The "independent components" of natural scenes are edge filters Vision Res. 37 1997 3327 3338
54. M.T. Wiechert, B. Judkewitz, H. Riecke, and R.W. Friedrich Mechanisms of pattern decorrelation by recurrent neuronal circuits Nat. Neurosci. 13 2010 1003 1010
55. W.E. Vinje, and J.L. Gallant Sparse coding and decorrelation in primary visual cortex during natural vision Science 287 2000 1273 1276
56. J. Perez-Orive, O. Mazor, G.C. Turner, S. Cassenaer, R.I. Wilson, and G. Laurent Oscillations and sparsening of odor representations in the mushroom body Science 297 2002 359 365
57. H.B. Barlow Possible principles underlying the transformations of sensory messages W.A. Rosenblith, Sensory Communication 1961 MIT Press Cambridge, MA 217 234
58. H. Barlow Redundancy reduction revisited Network 12 2001 241 253
59. S. Amari, A. Cichocki, H.H. Yang, Recurrent neural networks for blind separation of sources, in: International Symposium on Non-linear Theory and its Applications, NOLTA'95, Las Vegas, 1995, pp. 37-42.
60. E. Weinstein, M. Feder, and A.V. Oppenheim Multi-channel signal separation by decorrelation IEEE Trans. Speech Audio Process. 1 1993 405 413
61. G.D. Brown, S. Yamada, and T.J. Sejnowski Independent component analysis at the neural cocktail party Trends Neurosci. 24 2001 54 63
62. L.C. Parra, and C.D. Spence Separation of non-stationary natural signals S. Roberts, R. Everson, Independent Component Analysis: Principles and Practice 2001 Cambridge University Press Cambridge, MA 135 157
63. S.D. Wick, M.T. Wiechert, R.W. Friedrich, and H. Riecke Pattern orthogonalization via channel decorrelation by adaptive networks J. Comput. Neurosci. 28 2010 29 45
64. S.H. DeVries, and D.A. Baylor Synaptic circuitry of the retina and olfactory bulb Cell 72 Suppl 1993 139 149
65. M. Yokoi, K. Mori, and S. Nakanishi Refinement of odor molecule tuning by dendrodendritic synaptic inhibition in the olfactory bulb Proc. Natl. Acad. Sci. USA 92 1995 3371 3375
66. K. Mori, and G.M. Shepherd Emerging principles of molecular signal processing by mitral/tufted cells in the olfactory bulb Stem Cell Biol. 5 1994 65 74
67. E.R. Soucy, D.F. Albeanu, A.L. Fantana, V.N. Murthy, and M. Meister Precision and diversity in an odor map on the olfactory bulb Nat. Neurosci. 12 2009 210 220
68. A.L. Fantana, E.R. Soucy, and M. Meister Rat olfactory bulb mitral cells receive sparse glomerular inputs Neuron 59 2008 802 814
69. M. Wachowiak, and M.T. Shipley Coding and synaptic processing of sensory information in the glomerular layer of the olfactory bulb Semin. Cell Dev. Biol. 17 2006 411 423
70. G. Laurent A systems perspective on early olfactory coding Science 286 1999 723 728
71. T.A. Cleland, and P. Sethupathy Non-topographical contrast enhancement in the olfactory bulb BMC Neurosci. 7 2006 7
72. A.C. Arevian, V. Kapoor, and N.N. Urban Activity-dependent gating of lateral inhibition in the mouse olfactory bulb Nat. Neurosci. 11 2008 80 87
73. T.A. Cleland, B.A. Johnson, M. Leon, and C. Linster Relational representation in the olfactory system Proc. Natl. Acad. Sci. USA 104 2007 1953 1958
74. S.T. Bundschuh, P. Zhu, Y.-P. Zhang Schärer, and R.W. Friedrich Dopaminergic modulation of mitral cells and odor responses in the zebrafish olfactory bulb J. Neurosci. 32 2012 6830 6840
75. J. de la Rocha, B. Doiron, E. Shea-Brown, K. Josic, and A. Reyes Correlation between neural spike trains increases with firing rate Nature 448 2007 802 806
76. R.H. Hahnloser, H.S. Seung, and J.J. Slotine Permitted and forbidden sets in symmetric threshold-linear networks Neural Comput. 15 2003 621 638
77. D.C. Willhite, K.T. Nguyen, A.V. Masurkar, C.A. Greer, G.M. Shepherd, and W.R. Chen Viral tracing identifies distributed columnar organization in the olfactory bulb Proc. Natl. Acad. Sci. USA 103 2006 12592 12597
78. R.W. Friedrich Mechanisms of odor discrimination: neurophysiological and behavioral approaches Trends Neurosci. 29 2006 40 47
79. J. Chapuis, and D.A. Wilson Bidirectional plasticity of cortical pattern recognition and behavioral sensory acuity Nat. Neurosci. 15 2011 155 161
80. J.A. Gottfried Function follows form: ecological constraints on odor codes and olfactory percepts Curr. Opin. Neurobiol. 19 2009 422 429
81. M.D. Rabin Experience facilitates olfactory quality discrimination Percept. Psychophys. 44 1988 532 540
82. W. Li, J.D. Howard, T.B. Parrish, and J.A. Gottfried Aversive learning enhances perceptual and cortical discrimination of indiscriminable odor cues Science 319 2008 1842 1845
83. N. Uchida, and Z.F. Mainen Speed and accuracy of olfactory discrimination in the rat Nat. Neurosci. 6 2003 1224 1229
84. N.M. Abraham, H. Spors, A. Carleton, T.W. Margrie, T. Kuner, and A.T. Schaefer Maintaining accuracy at the expense of speed: stimulus similarity defines odor discrimination time in mice Neuron 44 2004 865 876
85. D. Rinberg, A. Koulakov, and A. Gelperin Speed-accuracy tradeoff in olfaction Neuron 51 2006 351 358
86. P. Miklavc, and T. Valentinčič Chemotopy of amino acids on the olfactory bulb predicts olfactory discrimination capabilities of zebrafish Danio rerio Chem. Senses 37 2012 65 75
87. S.R. Olsen, V. Bhandawat, and R.I. Wilson Divisive normalization in olfactory population codes Neuron 66 2010 287 299
88. O. Mazor, and G. Laurent Transient dynamics versus fixed points in odor representations by locust antennal lobe projection neurons Neuron 48 2005 661 673
89. J.S. Isaacson Mechanisms governing dendritic gamma-aminobutyric acid (GABA) release in the rat olfactory bulb Proc. Natl. Acad. Sci. USA 98 2001 337 342
90. W. Denk, K.L. Briggman, and M. Helmstaedter Structural neurobiology: missing link to a mechanistic understanding of neural computation Nat. Rev. Neurosci. 13 2012 351 358
91. R. Tabor, and R.W. Friedrich Pharmacological analysis of ionotropic glutamate receptor function in neuronal circuits of the zebrafish olfactory bulb PLoS One 3 2008 e1416