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Volumn 588, Issue 15, 2014, Pages 2464-2469

Isostericity and tautomerism of base pairs in nucleic acids

Author keywords

anticodon; base modifications; base pair; decoding; fidelity; isostericity; ribosome; tautomerism

Indexed keywords

CARBON; NUCLEIC ACID; NUCLEIC ACID BASE;

EID: 84904246134     PISSN: 00145793     EISSN: 18733468     Source Type: Journal    
DOI: 10.1016/j.febslet.2014.06.031     Document Type: Review
Times cited : (47)

References (37)
  • 1
    • 0035010211 scopus 로고    scopus 로고
    • Geometric nomenclature and classification of RNA base pairs
    • N.B. Leontis, and E. Westhof Geometric nomenclature and classification of RNA base pairs RNA 7 2001 499 512
    • (2001) RNA , vol.7 , pp. 499-512
    • Leontis, N.B.1    Westhof, E.2
  • 3
    • 79957851139 scopus 로고    scopus 로고
    • Sequence-based identification of 3D structural modules in RNA with RMDetect
    • J.A. Cruz, and E. Westhof Sequence-based identification of 3D structural modules in RNA with RMDetect Nat. Methods 8 2011 513 521
    • (2011) Nat. Methods , vol.8 , pp. 513-521
    • Cruz, J.A.1    Westhof, E.2
  • 6
    • 0014674282 scopus 로고
    • Tautomeric equilibria in inosine and adenosine
    • R.V. Wolfenden Tautomeric equilibria in inosine and adenosine J. Mol. Biol. 40 1969 307 310
    • (1969) J. Mol. Biol. , vol.40 , pp. 307-310
    • Wolfenden, R.V.1
  • 8
    • 0017130640 scopus 로고
    • Tautomerism in cytosine and 3-methylcytosine. A thermodynamic and kinetic study
    • M. Dreyfus, O. Bensaude, G. Dodin, and J.E. Dubois Tautomerism in cytosine and 3-methylcytosine. A thermodynamic and kinetic study J. Am. Chem. Soc. 98 1976 6338 6349
    • (1976) J. Am. Chem. Soc. , vol.98 , pp. 6338-6349
    • Dreyfus, M.1    Bensaude, O.2    Dodin, G.3    Dubois, J.E.4
  • 9
    • 37049052682 scopus 로고
    • Tautomeric axines. Part I. The tautomerism of 1-methyluracil and 5-bromo-1-methyluracil
    • A.R. Katritzky, and A.J. Waring Tautomeric axines. Part I. The tautomerism of 1-methyluracil and 5-bromo-1-methyluracil J. Chem. Soc. 1962 1540 1544
    • (1962) J. Chem. Soc. , pp. 1540-1544
    • Katritzky, A.R.1    Waring, A.J.2
  • 10
    • 0027492904 scopus 로고
    • Enzymatic recognition of the base pair between isocytidine and isoguanosine
    • C.Y. Switzer, S.E. Moroney, and S.A. Benner Enzymatic recognition of the base pair between isocytidine and isoguanosine Biochemistry 32 1993 10489 10496
    • (1993) Biochemistry , vol.32 , pp. 10489-10496
    • Switzer, C.Y.1    Moroney, S.E.2    Benner, S.A.3
  • 11
    • 0017148262 scopus 로고
    • Complementary base pairing and the origin of substitution mutations
    • M.D. Topal, and J.R. Fresco Complementary base pairing and the origin of substitution mutations Nature 263 1976 285 289
    • (1976) Nature , vol.263 , pp. 285-289
    • Topal, M.D.1    Fresco, J.R.2
  • 12
    • 0017144665 scopus 로고
    • Base pairing and fidelity in codon-anticodon interaction
    • M.D. Topal, and J.R. Fresco Base pairing and fidelity in codon-anticodon interaction Nature 263 1976 289 293
    • (1976) Nature , vol.263 , pp. 289-293
    • Topal, M.D.1    Fresco, J.R.2
  • 13
    • 84859593945 scopus 로고    scopus 로고
    • A new understanding of the decoding principle on the ribosome
    • N. Demeshkina, L. Jenner, E. Westhof, M. Yusupov, and G. Yusupova A new understanding of the decoding principle on the ribosome Nature 484 2012 256 259
    • (2012) Nature , vol.484 , pp. 256-259
    • Demeshkina, N.1    Jenner, L.2    Westhof, E.3    Yusupov, M.4    Yusupova, G.5
  • 14
    • 84878947991 scopus 로고    scopus 로고
    • New structural insights into the decoding mechanism: Translation infidelity via a G.U pair with Watson-Crick geometry
    • N. Demeshkina, L. Jenner, E. Westhof, M. Yusupov, and G. Yusupova New structural insights into the decoding mechanism: translation infidelity via a G.U pair with Watson-Crick geometry FEBS Lett. 587 2013 1848 1857
    • (2013) FEBS Lett. , vol.587 , pp. 1848-1857
    • Demeshkina, N.1    Jenner, L.2    Westhof, E.3    Yusupov, M.4    Yusupova, G.5
  • 15
    • 0030802234 scopus 로고    scopus 로고
    • Intron-dependent enzymatic formation of modified nucleosides in eukaryotic tRNAs: A review
    • H. Grosjean, Z. Szweykowska-Kulinska, Y. Motorin, F. Fasiolo, and G. Simos Intron-dependent enzymatic formation of modified nucleosides in eukaryotic tRNAs: a review Biochimie 79 1997 293 302
    • (1997) Biochimie , vol.79 , pp. 293-302
    • Grosjean, H.1    Szweykowska-Kulinska, Z.2    Motorin, Y.3    Fasiolo, F.4    Simos, G.5
  • 16
    • 84881477474 scopus 로고    scopus 로고
    • Unusual base pairing during the decoding of a stop codon by the ribosome
    • I.S. Fernandez, C.L. Ng, A.C. Kelley, G. Wu, Y.T. Yu, and V. Ramakrishnan Unusual base pairing during the decoding of a stop codon by the ribosome Nature 500 2013 107 110
    • (2013) Nature , vol.500 , pp. 107-110
    • Fernandez, I.S.1    Ng, C.L.2    Kelley, A.C.3    Wu, G.4    Yu, Y.T.5    Ramakrishnan, V.6
  • 17
    • 0035958587 scopus 로고    scopus 로고
    • The path of messenger RNA through the ribosome
    • G.Z. Yusupova, M.M. Yusupov, J.H. Cate, and H.F. Noller The path of messenger RNA through the ribosome Cell 106 2001 233 241
    • (2001) Cell , vol.106 , pp. 233-241
    • Yusupova, G.Z.1    Yusupov, M.M.2    Cate, J.H.3    Noller, H.F.4
  • 19
    • 0033985575 scopus 로고    scopus 로고
    • On the wobble GoU and related pairs
    • B. Masquida, and E. Westhof On the wobble GoU and related pairs RNA 6 2000 9 15
    • (2000) RNA , vol.6 , pp. 9-15
    • Masquida, B.1    Westhof, E.2
  • 20
    • 0016304026 scopus 로고
    • Structures for the polynucleotide complexes poly(dA) with poly (dT) and poly(dT) with poly(dA) with poly (dT)
    • S. Arnott, and E. Selsing Structures for the polynucleotide complexes poly(dA) with poly (dT) and poly(dT) with poly(dA) with poly (dT) J. Mol. Biol. 88 1974 509 521
    • (1974) J. Mol. Biol. , vol.88 , pp. 509-521
    • Arnott, S.1    Selsing, E.2
  • 21
    • 84904256710 scopus 로고
    • X-ray diffraction studies of synthetic polynucleotides
    • R. Langridge, and A. Rich X-ray diffraction studies of synthetic polynucleotides Acta Crystallogr. 13 1960 1052
    • (1960) Acta Crystallogr. , vol.13 , pp. 1052
    • Langridge, R.1    Rich, A.2
  • 22
    • 0014964418 scopus 로고
    • Some misconceptions on fourier analysis and Watson-Crick base pairing
    • M.H. Wilkins, S. Arnott, D.A. Marvin, and L.D. Hamilton Some misconceptions on fourier analysis and Watson-Crick base pairing Science 167 1970 1693 1694
    • (1970) Science , vol.167 , pp. 1693-1694
    • Wilkins, M.H.1    Arnott, S.2    Marvin, D.A.3    Hamilton, L.D.4
  • 23
    • 0032300804 scopus 로고    scopus 로고
    • Conserved geometrical base-pairing patterns in RNA
    • N.B. Leontis, and E. Westhof Conserved geometrical base-pairing patterns in RNA Q. Rev. Biophys. 31 1998 399 455
    • (1998) Q. Rev. Biophys. , vol.31 , pp. 399-455
    • Leontis, N.B.1    Westhof, E.2
  • 30
    • 0037470560 scopus 로고    scopus 로고
    • Crystal structure of geneticin bound to a bacterial 16S ribosomal RNA A site oligonucleotide
    • Q. Vicens, and E. Westhof Crystal structure of geneticin bound to a bacterial 16S ribosomal RNA A site oligonucleotide J. Mol. Biol. 326 2003 1175 1188
    • (2003) J. Mol. Biol. , vol.326 , pp. 1175-1188
    • Vicens, Q.1    Westhof, E.2
  • 32
    • 0028206986 scopus 로고
    • Structure of a mispaired RNA double helix at 1.6-A resolution and implications for the prediction of RNA secondary structure
    • W.B. Cruse, P. Saludjian, E. Biala, P. Strazewski, T. Prange, and O. Kennard Structure of a mispaired RNA double helix at 1.6-A resolution and implications for the prediction of RNA secondary structure Proc. Natl. Acad. Sci. U.S.A. 91 1994 4160 4164
    • (1994) Proc. Natl. Acad. Sci. U.S.A. , vol.91 , pp. 4160-4164
    • Cruse, W.B.1    Saludjian, P.2    Biala, E.3    Strazewski, P.4    Prange, T.5    Kennard, O.6
  • 33
    • 18844413446 scopus 로고    scopus 로고
    • Structural insights into translational fidelity
    • J.M. Ogle, and V. Ramakrishnan Structural insights into translational fidelity Annu. Rev. Biochem. 74 2005 129 177
    • (2005) Annu. Rev. Biochem. , vol.74 , pp. 129-177
    • Ogle, J.M.1    Ramakrishnan, V.2
  • 34
    • 0030816674 scopus 로고    scopus 로고
    • The modified wobble base inosine in yeast tRNAIle is a positive determinant for aminoacylation by isoleucyl-tRNA synthetase
    • B. Senger, S. Auxilien, U. Englisch, F. Cramer, and F. Fasiolo The modified wobble base inosine in yeast tRNAIle is a positive determinant for aminoacylation by isoleucyl-tRNA synthetase Biochemistry 36 1997 8269 8275
    • (1997) Biochemistry , vol.36 , pp. 8269-8275
    • Senger, B.1    Auxilien, S.2    Englisch, U.3    Cramer, F.4    Fasiolo, F.5
  • 35
    • 0026485424 scopus 로고
    • Pseudouridine in the anticodon G psi A of plant cytoplasmic tRNA(Tyr) is required for UAG and UAA suppression in the TMV-specific context
    • K. Zerfass, and H. Beier Pseudouridine in the anticodon G psi A of plant cytoplasmic tRNA(Tyr) is required for UAG and UAA suppression in the TMV-specific context Nucleic Acids Res. 20 1992 5911 5918
    • (1992) Nucleic Acids Res. , vol.20 , pp. 5911-5918
    • Zerfass, K.1    Beier, H.2
  • 37
    • 79959284255 scopus 로고    scopus 로고
    • Converting nonsense codons into sense codons by targeted pseudouridylation
    • J. Karijolich, and Y.T. Yu Converting nonsense codons into sense codons by targeted pseudouridylation Nature 474 2011 395 398
    • (2011) Nature , vol.474 , pp. 395-398
    • Karijolich, J.1    Yu, Y.T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.