Erratum to: Antigenic variation of clade 2.1 H5N1 virus is determined by a few amino acid substitutions immediately adjacent to the receptor binding site (mBio, (2014), 5,3 (10.1128/mBio.01070-14));Antigenic variation of clade 2.1 H5N1 virus is determined by a few amino acid substitutions immediately adjacent to the receptor binding site

mBio

Volumn 5, Issue 3, 2014, Pages

  Koel, Björn F ^a   van der Vliet, Stefan ^a   Burke, David F ^b   Bestebroer, Theo M ^a   Bharoto, Eny E ^c   Yasa, I Wayan W ^c   Herliana, Inna ^c   Laksono, Brigitta M ^a,c   Xu, Kemin ^d   Skepner, Eugene ^b   Russell, Colin A ^b   Rimmelzwaan, Guus F ^a   Perez, Daniel R ^d   Osterhaus, Albert D M E ^a   Smith, Derek J ^a,b   Prajitno, Teguh Y ^c   Fouchier, Ron A M ^a  

^a ERASMUS MEDICAL CENTER   (Netherlands)

^b UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^c JAPFA Comfeed   (Indonesia)

^d UNIVERSITY OF MARYLAND   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBODY; INFLUENZA VIRUS HEMAGGLUTININ; VIRUS RECEPTOR;

AMINO ACID SUBSTITUTION; ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL TISSUE; ANTIGENIC VARIATION; ARTICLE; AVIAN INFLUENZA VIRUS; BINDING SITE; CHICKEN; CLADISTICS; CONTROLLED STUDY; FERRET; GENETIC DISTANCE; HEMAGGLUTINATION INHIBITION TEST; INDONESIA; INFLUENZA VIRUS A H5N1; MOLECULAR RECOGNITION; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; RECEPTOR BINDING; SITE DIRECTED MUTAGENESIS; VIRUS CELL INTERACTION; VIRUS DETECTION; VIRUS MUTANT; VIRUS NEUTRALIZATION; VIRUS VIRULENCE; ZOONOSIS; AMINO ACID SEQUENCE; ANIMAL; AVIAN INFLUENZA; BIRD DISEASE; CHEMISTRY; CLASSIFICATION; GENETICS; HUMAN; IMMUNOLOGY; INFLUENZA; MOLECULAR GENETICS; VIROLOGY;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ANIMALS; ANTIGENIC VARIATION; BINDING SITES; CHICKENS; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; HUMANS; INFLUENZA A VIRUS, H5N1 SUBTYPE; INFLUENZA IN BIRDS; INFLUENZA, HUMAN; MOLECULAR SEQUENCE DATA; PHYLOGENY; POULTRY DISEASES; RECEPTORS, VIRUS;

EID: 84904015625     PISSN: 21612129     EISSN: 21507511     Source Type: Journal    
DOI: 10.1128/mBio.01645-14     Document Type: Erratum

References (37)

1. WHO/OIE/FAO H5N1 Evolution Working Group. 2008. Toward a unified nomenclature system for highly pathogenic avian influenza virus (H5N1). Emerg. Infect. Dis. 14: e1. http://dx. doi. org/10. 3201/eid1407. 071681.
2. WHO/OIE/FAO H5N1 Evolution Working Group. 2009. Continuing progress towards a unified nomenclature for the highly pathogenic H5N1 avian influenza viruses: divergence of clade 2. 2 viruses. Influenza Other Respir. Viruses 3: 59-62. http://dx. doi. org/10. 1111/j. 1750-2659. 2009. 00078. x.
3. WHO/OIE/FAO H5N1 Evolution Working Group. 2012. Continued evolution of highly pathogenic avian influenza A (H5N1): updated nomenclature. Influenza Other Respir. Viruses 6: 1-5. http://dx. doi. org/10. 1111/j. 1750-2659. 2011. 00298. x.
4. Lam TT, Hon CC, Lemey P, Pybus OG, Shi M, Tun HM, Li J, Jiang J, Holmes EC, Leung FC. 2012. Phylodynamics of H5N1 avian influenza virus in Indonesia. Mol. Ecol. 21: 3062-3077. http://dx. doi. org/10. 1111/j. 1365-294X. 2012. 05577. x.
5. Smith GJ, Naipospos TS, Nguyen TD, de Jong MD, Vijaykrishna D, Usman TB, Hassan SS, Nguyen TV, Dao TV, Bui NA, Leung YH, Cheung CL, Rayner JM, Zhang JX, Zhang LJ, Poon LL, Li KS, Nguyen VC, Hien TT, Farrar J, Webster RG, Chen H, Peiris JS, Guan Y. 2006. Evolution and adaptation of H5N1 influenza virus in avian and human hosts in Indonesia and Vietnam. Virology 350: 258-268. http://dx. doi. org/10. 1016/j. virol. 2006. 03. 048.
6. Rahma SM. 2010. The role of NGOs in combating avian influenza in Indonesia: a Muhammadiyah case study. NTS-Asia research paper no. 2. RSIS Centre for Non-Traditional Security (NTS) Studies, Singapore.
7. Kandun IN, Wibisono H, Sedyaningsih ER, Yusharmen, MD, Hadisoedarsuno W, Purba W, Santoso H, Septiawati C, Tresnaningsih E, Heriyanto B, Yuwono D, Harun S, Soeroso S, Giriputra S, Blair PJ, Jeremijenko A, Kosasih H, Putnam SD, Samaan G, Silitonga M, Chan KH, Poon LL, Lim W, Klimov A, Lindstrom S, Guan Y, Donis R, Katz J, Cox N, Peiris M, Uyeki TM. 2006. Three Indonesian clusters of H5N1 virus infection in 2005. N. Engl. J. Med. 355: 2186-2194. http://dx. doi. org/10. 1056/NEJMoa060930.
8. World Health Organization. July 2013. Cumulative number of confirmed human cases for avian influenza A (H5N1) reported to WHO, 2003-2013. World Health Organization, Geneva, Switzerland. http://www. who. int/influenza/human_animal_interface/EN_GIP_20130705CumulativeNumberH5N1cases_2. pdf.
9. Food and Agriculture Organization of the United Nations. June 2010. OFFLU assists Indonesia to combat avian influenza. Food and Agriculture Organization of the United Nations, Rome, Italy. http://www. fao. org/avianflu/en/news/indonesia_OFFLU_hpai. html.
10. Sumiarto BA. 2008. Overview on poultry sector and HPAI situation for Indonesia with special emphasis on the island of Java. Africa/Indonesia Region Report no. 3. International Food Policy Research Institute, Washington, DC. http://www. ifpri. org/publication/overview-poultry-sector-and-hpai-situation-indonesia-special-emphasis-island-java.
11. World Health Organization. October 2011. Updated unified nomenclature system for the highly pathogenic H5N1 avian influenza viruses. http://www. who. int/influenza/gisrs_laboratory/h5n1_nomenclature/en/.
12. Wilson IA, Cox NJ. 1990. Structural basis of immune recognition of influenza virus hemagglutinin. Annu. Rev. Immunol. 8: 737-771. http://dx. doi. org/10. 1146/annurev. iy. 08. 040190. 003513.
13. Wiley DC, Wilson IA, Skehel JJ. 1981. Structural identification of the antibody-binding sites of Hong Kong influenza haemagglutinin and their involvement in antigenic variation. Nature 289: 373-378. http://dx. doi. org/10. 1038/289373a0.
14. Caton AJ, Brownlee GG, Yewdell JW, Gerhard W. 1982. The antigenic structure of the influenza virus A/PR/8/34 hemagglutinin (H1 subtype). Cell 31: 417-427. http://dx. doi. org/10. 1016/0092-8674(82)90135-0.
15. Kaverin NV, Rudneva IA, Ilyushina NA, Varich NL, Lipatov AS, Smirnov YA, Govorkova EA, Gitelman AK, Lvov DK, Webster RG. 2002. Structure of antigenic sites on the haemagglutinin molecule of H5 avian influenza virus and phenotypic variation of escape mutants. J. Gen. Virol. 83: 2497-2505.
16. Kaverin NV, Rudneva IA, Govorkova EA, Timofeeva TA, Shilov AA, Kochergin-Nikitsky KS, Krylov PS, Webster RG. 2007. Epitope mapping of the hemagglutinin molecule of a highly pathogenic H5N1 influenza virus by using monoclonal antibodies. J. Virol. 81: 12911-12917. http://dx. doi. org/10. 1128/JVI. 01522-07.
17. Cattoli G, Milani A, Temperton N, Zecchin B, Buratin A, Molesti E, Aly MM, Arafa A, Capua I. 2011. Antigenic drift in H5N1 avian influenza virus in poultry is driven by mutations in major antigenic sites of the hemagglutinin molecule analogous to those for human influenza virus. J. Virol. 85: 8718-8724. http://dx. doi. org/10. 1128/JVI. 02403-10.
18. Koel BF, Burke DF, Bestebroer TM, van der Vliet S, Zondag GC, Vervaet G, Skepner E, Lewis NS, Spronken MI, Russell CA, Eropkin MY, Hurt AC, Barr IG, de Jong JC, Rimmelzwaan GF, Osterhaus AD, Fouchier RA, Smith DJ. 2013. Substitutions near the receptor binding site determine major antigenic change during influenza virus evolution. Science 342: 976-979. http://dx. doi. org/10. 1126/science. 1244730.
19. Wibawa H, Henning J, Wong F, Selleck P, Junaidi A, Bingham J, Daniels P, Meers J. 2011. A molecular and antigenic survey of H5N1 highly pathogenic avian influenza virus isolates from smallholder duck farms in Central Java, Indonesia during 2007-2008. Virol. J. 8: 425. http://dx. doi. org/10. 1186/1743-422X-8-425.
20. World Health Organization. 2013. Summary of status of development and availability of A(H5N1) candidate vaccine viruses and potency testing reagents. http://www. who. int/influenza/vaccines/virus/candidates_reagents/summary_a_h5n1_cvv_20130813. pdf.
21. de Wit E, Spronken MI, Vervaet G, Rimmelzwaan GF, Osterhaus AD, Fouchier RA. 2007. A reverse-genetics system for influenza A virus using T7 RNA polymerase. J. Gen. Virol. 88: 1281-1287. http://dx. doi. org/10. 1099/vir. 0. 82452-0.
22. Watanabe Y, Ibrahim MS, Ellakany HF, Kawashita N, Mizuike R, Hiramatsu H, Sriwilaijaroen N, Takagi T, Suzuki Y, Ikuta K. 2011. Acquisition of human-type receptor binding specificity by new H5N1 influenza virus sublineages during their emergence in birds in Egypt. PLoS Pathog. 7: e1002068. http://dx. doi. org/10. 1371/journal. ppat. 1002068.
23. Skehel JJ, Stevens DJ, Daniels RS, Douglas AR, Knossow M, Wilson IA, Wiley DC. 1984. A carbohydrate side chain on hemagglutinins of Hong Kong influenza viruses inhibits recognition by a monoclonal antibody. Proc. Natl. Acad. Sci. U. S. A. 81: 1779-1783. http://dx. doi. org/10. 1073/pnas. 81. 6. 1779.
24. Abe Y, Takashita E, Sugawara K, Matsuzaki Y, Muraki Y, Hongo S. 2004. Effect of the addition of oligosaccharides on the biological activities and antigenicity of influenza A/H3N2 virus hemagglutinin. J. Virol. 78: 9605-9611. http://dx. doi. org/10. 1128/JVI. 78. 18. 9605-9611. 2004.
25. Smith DJ, Lapedes AS, de Jong JC, Bestebroer TM, Rimmelzwaan GF, Osterhaus AD, Fouchier RA. 2004. Mapping the antigenic and genetic evolution of influenza virus. Science 305: 371-376. http://dx. doi. org/10. 1126/science. 1097211.
26. de Jong JC, Smith DJ, Lapedes AS, Donatelli I, Campitelli L, Barigazzi G, Van Reeth K, Jones TC, Rimmelzwaan GF, Osterhaus AD, Fouchier RA. 2007. Antigenic and genetic evolution of swine influenza A (H3N2) viruses in Europe. J. Virol. 81: 4315-4322. http://dx. doi. org/10. 1128/JVI. 02458-06.
27. Russell CA, Jones TC, Barr IG, Cox NJ, Garten RJ, Gregory V, Gust ID, Hampson AW, Hay AJ, Hurt AC, de Jong JC, Kelso A, Klimov AI, Kageyama T, Komadina N, Lapedes AS, Lin YP, Mosterin A, Obuchi M, Odagiri T, Osterhaus AD, Rimmelzwaan GF, Shaw MW, Skepner E, Stohr K, Tashiro M, Fouchier RA, Smith DJ. 2008. The global circulation of seasonal influenza A (H3N2) viruses. Science 320: 340-346. http://dx. doi. org/10. 1126/science. 1154137.
28. Bett B, McLaws M, Jost C, Schoonman L, Unger F, Poole J, Lapar ML, Siregar ES, Azhar M, Hidayat MM, Dunkle SE, Mariner J. 2013. The effectiveness of preventative mass vaccination regimes against the incidence of highly pathogenic avian influenza on Java Island, Indonesia. Transbound. Emerg. Dis. http://dx. doi. org/10. 1111/tbed. 12101.
29. Jadhao SJ, Lee CW, Sylte M, Suarez DL. 2009. Comparative efficacy of North American and antigenically matched reverse genetics derived H5N9 DIVA marker vaccines against highly pathogenic Asian H5N1 avian influenza viruses in chickens. Vaccine 27: 6247-6260. http://dx. doi. org/10. 1016/j. vaccine. 2009. 07. 110.
30. Cattoli G, Fusaro A, Monne I, Coven F, Joannis T, El-Hamid HS, Hussein AA, Cornelius C, Amarin NM, Mancin M, Holmes EC, Capua I. 2011. Evidence for differing evolutionary dynamics of A/H5N1 viruses among countries applying or not applying avian influenza vaccination in poultry. Vaccine 29: 9368-9375. http://dx. doi. org/10. 1016/j. vaccine. 2011. 09. 127.
31. World Health Organization. September 2011. Antigenic and genetic characteristics of zoonotic influenza viruses and development of candidate vaccine viruses for pandemic preparedness. http://www. who. int/influenza/resources/documents/2011_09_h5_h9_vaccinevirusupdate. pdf.
32. Swofford D. 2003. AUP*: phylogenetic analysis using parsimony (* and other methods), 4. 0 ed. Sinauer Associates, Sunderland, MA.
33. Posada D, Crandall KA. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818. http://dx. doi. org/10. 1093/bioinformatics/14. 9. 817.
34. de Wit E, Spronken MI, Bestebroer TM, Rimmelzwaan GF, Osterhaus AD, Fouchier RA. 2004. Efficient generation and growth of influenza virus A/PR/8/34 from eight cDNA fragments. Virus Res. 103: 155-161. http://dx. doi. org/10. 1016/j. virusres. 2004. 02. 028.
35. Hoffmann E, Neumann G, Kawaoka Y, Hobom G, Webster RG. 2000. A DNA transfection system for generation of influenza A virus from eight plasmids. Proc. Natl. Acad. Sci. U. S. A. 97: 6108-6113. http://dx. doi. org/10. 1073/pnas. 100133697.
36. Hirst GK. 1943. Studies of antigenic differences among strains of influenza A by means of red cell agglutination. J. Exp. Med. 78: 407-423. http://dx. doi. org/10. 1084/jem. 78. 5. 407.
37. Zhang W, Shi Y, Lu X, Shu Y, Qi J, Gao GF. 2013. An airborne transmissible avian influenza H5 hemagglutinin seen at the atomic level. Science 340: 1463-1467. http://dx. doi. org/10. 1126/science. 1236787.