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Volumn 124, Issue 1, 2014, Pages 24-32

Whole-exome sequencing and functional studies identify RPS29 as a novel gene mutated in multicase Diamond-Blackfan anemia families

Author keywords

[No Author keywords available]

Indexed keywords

HEMOGLOBIN; RIBOSOME PROTEIN; RIBOSOME PROTEIN S29; RIBOSOME RNA; UNCLASSIFIED DRUG; RIBOSOMAL PROTEIN S29;

EID: 84903949048     PISSN: 00064971     EISSN: 15280020     Source Type: Journal    
DOI: 10.1182/blood-2013-11-540278     Document Type: Article
Times cited : (72)

References (43)
  • 1
    • 78649549671 scopus 로고    scopus 로고
    • The ribosomal basis of Diamond-Blackfan anemia: Mutation and database update
    • Boria I, Garelli E, Gazda HT, et al. The ribosomal basis of Diamond-Blackfan anemia: mutation and database update. Hum Mutat. 2010;31(12): 1269-1279.
    • (2010) Hum Mutat. , vol.31 , Issue.12 , pp. 1269-1279
    • Boria, I.1    Garelli, E.2    Gazda, H.T.3
  • 3
    • 84860338982 scopus 로고    scopus 로고
    • The incidence of neoplasia in Diamond Blackfan anemia: A report from the Diamond Blackfan Anemia Registry
    • Vlachos A, Rosenberg PS, Atsidaftos E, Alter BP, Lipton JM. The incidence of neoplasia in Diamond Blackfan anemia: a report from the Diamond Blackfan Anemia Registry. Blood. 2012;119(16): 3815-3819.
    • (2012) Blood , vol.119 , Issue.16 , pp. 3815-3819
    • Vlachos, A.1    Rosenberg, P.S.2    Atsidaftos, E.3    Alter, B.P.4    Lipton, J.M.5
  • 5
    • 79952773882 scopus 로고    scopus 로고
    • Untangling the phenotypic heterogeneity of Diamond Blackfan anemia
    • Farrar JE, Dahl N. Untangling the phenotypic heterogeneity of Diamond Blackfan anemia. Semin Hematol. 2011;48(2):124-135.
    • (2011) Semin Hematol. , vol.48 , Issue.2 , pp. 124-135
    • Farrar, J.E.1    Dahl, N.2
  • 6
    • 77951431225 scopus 로고    scopus 로고
    • Ribosomopathies: Human disorders of ribosome dysfunction
    • Narla A, Ebert BL. Ribosomopathies: human disorders of ribosome dysfunction. Blood. 2010; 115(16):3196-3205.
    • (2010) Blood , vol.115 , Issue.16 , pp. 3196-3205
    • Narla, A.1    Ebert, B.L.2
  • 9
    • 84455180412 scopus 로고    scopus 로고
    • Ribosomal protein gene deletions in Diamond-Blackfan anemia
    • Farrar JE, Vlachos A, Atsidaftos E, et al. Ribosomal protein gene deletions in Diamond-Blackfan anemia. Blood. 2011;118(26): 6943-6951.
    • (2011) Blood , vol.118 , Issue.26 , pp. 6943-6951
    • Farrar, J.E.1    Vlachos, A.2    Atsidaftos, E.3
  • 10
    • 84861892842 scopus 로고    scopus 로고
    • Frameshift mutation in p53 regulator RPL26 is associated with multiple physical abnormalities and a specific pre-ribosomal RNA processing defect in diamondblackfan anemia
    • Gazda HT, Preti M, Sheen MR, et al. Frameshift mutation in p53 regulator RPL26 is associated with multiple physical abnormalities and a specific pre-ribosomal RNA processing defect in diamondblackfan anemia. Hum Mutat. 2012;33(7): 1037-1044.
    • (2012) Hum Mutat. , vol.33 , Issue.7 , pp. 1037-1044
    • Gazda, H.T.1    Preti, M.2    Sheen, M.R.3
  • 11
    • 84863554398 scopus 로고    scopus 로고
    • Exome sequencing identifies GATA1 mutations resulting in Diamond-Blackfan anemia
    • Sankaran VG, Ghazvinian R, Do R, et al. Exome sequencing identifies GATA1 mutations resulting in Diamond-Blackfan anemia. J Clin Invest. 2012; 122(7):2439-2443.
    • (2012) J Clin Invest. , vol.122 , Issue.7 , pp. 2439-2443
    • Sankaran, V.G.1    Ghazvinian, R.2    Do, R.3
  • 13
    • 77954339095 scopus 로고    scopus 로고
    • Malignancies and survival patterns in the National Cancer Institute inherited bone marrow failure syndromes cohort study
    • Alter BP, Giri N, Savage SA, et al. Malignancies and survival patterns in the National Cancer Institute inherited bone marrow failure syndromes cohort study. Br J Haematol. 2010;150(2): 179-188.
    • (2010) Br J Haematol. , vol.150 , Issue.2 , pp. 179-188
    • Alter, B.P.1    Giri, N.2    Savage, S.A.3
  • 14
    • 84873091956 scopus 로고    scopus 로고
    • Erythrocyte adenosine deaminase: Diagnostic value for Diamond-Blackfan anaemia
    • Fargo JH, Kratz CP, Giri N, et al. Erythrocyte adenosine deaminase: diagnostic value for Diamond-Blackfan anaemia. Br J Haematol. 2013;160(4):547-554.
    • (2013) Br J Haematol. , vol.160 , Issue.4 , pp. 547-554
    • Fargo, J.H.1    Kratz, C.P.2    Giri, N.3
  • 15
    • 84876503523 scopus 로고    scopus 로고
    • Germline mutations of regulator of telomere elongation helicase 1, RTEL1, in Dyskeratosis congenita
    • Ballew BJ, Yeager M, Jacobs K, et al. Germline mutations of regulator of telomere elongation helicase 1, RTEL1, in Dyskeratosis congenita. Hum Genet. 2013;132(4):473-480.
    • (2013) Hum Genet. , vol.132 , Issue.4 , pp. 473-480
    • Ballew, B.J.1    Yeager, M.2    Jacobs, K.3
  • 16
    • 79955483667 scopus 로고    scopus 로고
    • A framework for variation discovery and genotyping using next-generation DNA sequencing data
    • DePristo MA, Banks E, Poplin R, et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet. 2011;43(5):491-498.
    • (2011) Nat Genet. , vol.43 , Issue.5 , pp. 491-498
    • Depristo, M.A.1    Banks, E.2    Poplin, R.3
  • 19
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing [published correction appears in Nature. 2011;473(7348):544]
    • 1000 Genomes Project Consortium
    • Abecasis GR, Altshuler D, Auton A, et al; 1000 Genomes Project Consortium. A map of human genome variation from population-scale sequencing [published correction appears in Nature. 2011;473(7348):544]. Nature. 2010; 467(7319):1061-1073.
    • (2010) Nature , vol.467 , Issue.7319 , pp. 1061-1073
    • Abecasis, G.R.1    Altshuler, D.2    Auton, A.3
  • 20
    • 77951640946 scopus 로고    scopus 로고
    • A method and server for predicting damaging missense mutations
    • Adzhubei IA, Schmidt S, Peshkin L, et al. A method and server for predicting damaging missense mutations. Nat Methods. 2010;7(4): 248-249.
    • (2010) Nat Methods. , vol.7 , Issue.4 , pp. 248-249
    • Adzhubei, I.A.1    Schmidt, S.2    Peshkin, L.3
  • 21
    • 68149165614 scopus 로고    scopus 로고
    • Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
    • Kumar P, Henikoff S, Ng PC. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc. 2009;4(7):1073-1081.
    • (2009) Nat Protoc. , vol.4 , Issue.7 , pp. 1073-1081
    • Kumar, P.1    Henikoff, S.2    Ng, P.C.3
  • 22
    • 77955151784 scopus 로고    scopus 로고
    • MutationTaster evaluates diseasecausing potential of sequence alterations
    • Schwarz JM, Rödelsperger C, Schuelke M, Seelow D. MutationTaster evaluates diseasecausing potential of sequence alterations. Nat Methods. 2010;7(8):575-576.
    • (2010) Nat Methods. , vol.7 , Issue.8 , pp. 575-576
    • Schwarz, J.M.1    Rödelsperger, C.2    Schuelke, M.3    Seelow, D.4
  • 23
    • 66349086264 scopus 로고    scopus 로고
    • Identifying novel constrained elements by exploiting biased substitution patterns
    • Garber M, Guttman M, Clamp M, Zody MC, Friedman N, Xie X. Identifying novel constrained elements by exploiting biased substitution patterns. Bioinformatics. 2009;25(12):i54-i62.
    • (2009) Bioinformatics. , vol.25 , Issue.12
    • Garber, M.1    Guttman, M.2    Clamp, M.3    Zody, M.C.4    Friedman, N.5    Xie, X.6
  • 26
    • 84881613239 scopus 로고    scopus 로고
    • DbNSFP v2.0: A database of human non-synonymous SNVs and their functional predictions and annotations
    • Liu X, Jian X, Boerwinkle E. dbNSFP v2.0: a database of human non-synonymous SNVs and their functional predictions and annotations. Hum Mutat. 2013;34(9):E2393-E2402.
    • (2013) Hum Mutat. , vol.34 , Issue.9
    • Liu, X.1    Jian, X.2    Boerwinkle, E.3
  • 27
    • 79960763462 scopus 로고    scopus 로고
    • DbNSFP: A lightweight database of human nonsynonymous SNPs and their functional predictions
    • Liu X, Jian X, Boerwinkle E. dbNSFP: a lightweight database of human nonsynonymous SNPs and their functional predictions. Hum Mutat. 2011;32(8):894-899.
    • (2011) Hum Mutat. , vol.32 , Issue.8 , pp. 894-899
    • Liu, X.1    Jian, X.2    Boerwinkle, E.3
  • 28
    • 17444412589 scopus 로고    scopus 로고
    • Detecting amino acid sites under positive selection and purifying selection
    • DOI 10.1534/genetics.104.032144
    • Massingham T, Goldman N. Detecting amino acid sites under positive selection and purifying selection. Genetics. 2005;169(3):1753-1762. (Pubitemid 40547480)
    • (2005) Genetics , vol.169 , Issue.3 , pp. 1753-1762
    • Massingham, T.1    Goldman, N.2
  • 29
    • 33644847172 scopus 로고    scopus 로고
    • Prediction of protein stability changes for single-site mutations using support vector machines
    • DOI 10.1002/prot.20810
    • Cheng J, Randall A, Baldi P. Prediction of protein stability changes for single-site mutations using support vector machines. Proteins. 2006;62(4): 1125-1132. (Pubitemid 43364175)
    • (2006) Proteins: Structure, Function and Genetics , vol.62 , Issue.4 , pp. 1125-1132
    • Cheng, J.1    Randall, A.2    Baldi, P.3
  • 30
    • 27544469800 scopus 로고    scopus 로고
    • Predicting protein stability changes from sequences using support vector machines
    • DOI 10.1093/bioinformatics/bti1109
    • Capriotti E, Fariselli P, Calabrese R, Casadio R. Predicting protein stability changes from sequences using support vector machines. Bioinformatics. 2005;21(suppl 2):ii54-ii58. (Pubitemid 41535428)
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 2
    • Capriotti, E.1    Fariselli, P.2    Calabrese, R.3    Casadio, R.4
  • 31
    • 23144461249 scopus 로고    scopus 로고
    • I-Mutant2.0: Predicting stability changes upon mutation from the protein sequence or structure
    • DOI 10.1093/nar/gki375
    • Capriotti E, Fariselli P, Casadio R. I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure. Nucleic Acids Res. 2005;33(suppl 2):W306-W310. (Pubitemid 44529932)
    • (2005) Nucleic Acids Research , vol.33 , Issue.WEB. SERV. ISS.
    • Capriotti, E.1    Fariselli, P.2    Casadio, R.3
  • 32
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novel method for fast and accurate multiple sequence alignment
    • Notredame C, Higgins DG, Heringa J. T-Coffee: a novel method for fast and accurate multiple sequence alignment. J Mol Biol. 2000;302(1): 205-217.
    • (2000) J Mol Biol. , vol.302 , Issue.1 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3
  • 33
    • 65449188232 scopus 로고    scopus 로고
    • Jalview Version 2 - A multiple sequence alignment editor and analysis workbench
    • Waterhouse AM, Procter JB, Martin DMA, Clamp M, Barton GJ. Jalview Version 2 - a multiple sequence alignment editor and analysis workbench. Bioinformatics. 2009;25(9): 1189-1191.
    • (2009) Bioinformatics. , vol.25 , Issue.9 , pp. 1189-1191
    • Waterhouse, A.M.1    Procter, J.B.2    Martin, D.M.A.3    Clamp, M.4    Barton, G.J.5
  • 34
    • 4444221565 scopus 로고    scopus 로고
    • UCSF Chimera - A visualization system for exploratory research and analysis
    • Pettersen EF, Goddard TD, Huang CC, et al. UCSF Chimera - a visualization system for exploratory research and analysis. J Comput Chem. 2004;25(13):1605-1612.
    • (2004) J Comput Chem. , vol.25 , Issue.13 , pp. 1605-1612
    • Pettersen, E.F.1    Goddard, T.D.2    Huang, C.C.3
  • 35
    • 84877310529 scopus 로고    scopus 로고
    • Structures of the human and Drosophila 80S ribosome
    • Anger AM, Armache J-P, Berninghausen O, et al. Structures of the human and Drosophila 80S ribosome. Nature. 2013;497(7447):80-85.
    • (2013) Nature , vol.497 , Issue.7447 , pp. 80-85
    • Anger, A.M.1    Armache, J.-P.2    Berninghausen, O.3
  • 36
    • 19344366193 scopus 로고    scopus 로고
    • Many ribosomal protein genes are cancer genes in zebrafish
    • Amsterdam A, Sadler KC, Lai K, et al. Many ribosomal protein genes are cancer genes in zebrafish. PLoS Biol. 2004;2(5):E139.
    • (2004) PLoS Biol. , vol.2 , Issue.5
    • Amsterdam, A.1    Sadler, K.C.2    Lai, K.3
  • 37
    • 16644377902 scopus 로고    scopus 로고
    • Analysis of hematopoietic development in the zebrafish
    • In: Baron MH, ed Totowa, NJ: Humana Press
    • Paffett-Lugassy NN, Zon LI. Analysis of hematopoietic development in the zebrafish. In: Baron MH, ed. Developmental Hematopoiesis: Methods and Protocols. Totowa, NJ: Humana Press; 2005:171-198.
    • (2005) Developmental Hematopoiesis: Methods and Protocols , pp. 171-198
    • Paffett-Lugassy, N.N.1    Zon, L.I.2
  • 38
    • 77956380533 scopus 로고    scopus 로고
    • Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits
    • O'Donohue M-F, Choesmel V, Faubladier M, Fichant G, Gleizes P-E. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. J Cell Biol. 2010;190(5):853-866.
    • (2010) J Cell Biol. , vol.190 , Issue.5 , pp. 853-866
    • O'Donohue, M.-F.1    Choesmel, V.2    Faubladier, M.3    Fichant, G.4    Gleizes, P.-E.5
  • 39
    • 67651099088 scopus 로고    scopus 로고
    • A genetic screen in zebrafish defines a hierarchical network of pathways required for hematopoietic stem cell emergence
    • Burns CE, Galloway JL, Smith ACH, et al. A genetic screen in zebrafish defines a hierarchical network of pathways required for hematopoietic stem cell emergence. Blood. 2009;113(23): 5776-5782.
    • (2009) Blood , vol.113 , Issue.23 , pp. 5776-5782
    • Burns, C.E.1    Galloway, J.L.2    Smith, A.C.H.3
  • 40
    • 57649107153 scopus 로고    scopus 로고
    • Ribosomal protein S19 deficiency in zebrafish leads to developmental abnormalities and defective erythropoiesis through activation of p53 protein family
    • Danilova N, Sakamoto KM, Lin S. Ribosomal protein S19 deficiency in zebrafish leads to developmental abnormalities and defective erythropoiesis through activation of p53 protein family. Blood. 2008;112(13): 5228-5237.
    • (2008) Blood , vol.112 , Issue.13 , pp. 5228-5237
    • Danilova, N.1    Sakamoto, K.M.2    Lin, S.3
  • 41
    • 48249117726 scopus 로고    scopus 로고
    • Ribosomal mutations cause p53-mediated dark skin and pleiotropic effects
    • McGowan KA, Li JZ, Park CY, et al. Ribosomal mutations cause p53-mediated dark skin and pleiotropic effects. Nat Genet. 2008;40(8): 963-970.
    • (2008) Nat Genet. , vol.40 , Issue.8 , pp. 963-970
    • McGowan, K.A.1    Li, J.Z.2    Park, C.Y.3
  • 43
    • 58149250110 scopus 로고    scopus 로고
    • Many ribosomal protein mutations are associated with growth impairment and tumor predisposition in zebrafish
    • Lai K, Amsterdam A, Farrington S, Bronson RT, Hopkins N, Lees JA. Many ribosomal protein mutations are associated with growth impairment and tumor predisposition in zebrafish. Dev Dyn. 2009;238(1):76-85.
    • (2009) Dev Dyn. , vol.238 , Issue.1 , pp. 76-85
    • Lai, K.1    Amsterdam, A.2    Farrington, S.3    Bronson, R.T.4    Hopkins, N.5    Lees, J.A.6


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