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Volumn 9, Issue 7, 2014, Pages

Rapid MALDI-TOF mass spectrometry strain typing during a large outbreak of Shiga-toxigenic Escherichia coli

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATE; CONTROLLED STUDY; CUS GENE; EPIDEMIC; GENE IDENTIFICATION; GENETIC DISTANCE; GENETIC SIMILARITY; GENETIC VARIABILITY; GENOME ANALYSIS; GENOTYPING TECHNIQUE; GERMANY; LIQUID CHROMATOGRAPHY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MEASUREMENT ACCURACY; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PREVALENCE; PROCESS OPTIMIZATION; RELIABILITY; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS; SHIGA TOXIN PRODUCING ESCHERICHIA COLI; SIL GENE; STRAIN IDENTIFICATION; TANDEM MASS SPECTROMETRY; BACTERIUM IDENTIFICATION; ESCHERICHIA COLI INFECTIONS; HUMAN; MASS SPECTROMETRY; METABOLISM; MICROBIOLOGY; REPRODUCIBILITY;

EID: 84903908190     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0101924     Document Type: Article
Times cited : (83)

References (37)
  • 1
    • 67651108596 scopus 로고    scopus 로고
    • Ongoing revolution in bacteriology: Routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry
    • Seng P, Drancourt M, Gouriet F, La Scola B, Fournier PE, et al. (2009) Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin Infect Dis 49: 543-551.
    • (2009) Clin Infect Dis , vol.49 , pp. 543-551
    • Seng, P.1    Drancourt, M.2    Gouriet, F.3    La Scola, B.4    Fournier, P.E.5
  • 2
    • 0029777367 scopus 로고    scopus 로고
    • Rapid identification of intact whole bacteria based on spectral patterns using matrix-assisted laser desorption/ionization with time-of-flight mass spectrometry
    • Holland RD, Wilkes JG, Rafii F, Sutherland JB, Persons CC, et al. (1996) Rapid identification of intact whole bacteria based on spectral patterns using matrix-assisted laser desorption/ionization with time-of-flight mass spectrometry. Rapid Commun Mass Spectrom 10: 1227-1232.
    • (1996) Rapid Commun Mass Spectrom , vol.10 , pp. 1227-1232
    • Holland, R.D.1    Wilkes, J.G.2    Rafii, F.3    Sutherland, J.B.4    Persons, C.C.5
  • 3
    • 50949126366 scopus 로고    scopus 로고
    • Classification and identification of bacteria by mass spectrometry and computational analysis
    • Sauer S, Freiwald A, Maier T, Kube M, Reinhardt R, et al. (2008) Classification and identification of bacteria by mass spectrometry and computational analysis. PLoS One 3: e2843.
    • (2008) PLoS One , vol.3
    • Sauer, S.1    Freiwald, A.2    Maier, T.3    Kube, M.4    Reinhardt, R.5
  • 4
    • 50949123272 scopus 로고    scopus 로고
    • Rapid identification and typing of listeria species by matrix-assisted laser desorption ionization-time of flight mass spectrometry
    • Barbuddhe SB, Maier T, Schwarz G, Kostrzewa M, Hof H, et al. (2008) Rapid identification and typing of listeria species by matrix-assisted laser desorption ionization-time of flight mass spectrometry. Appl Environ Microbiol 74: 5402-5407.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 5402-5407
    • Barbuddhe, S.B.1    Maier, T.2    Schwarz, G.3    Kostrzewa, M.4    Hof, H.5
  • 6
    • 50849133873 scopus 로고    scopus 로고
    • Challenging the problem of clostridial identification with matrix-assisted laser desorption and ionization-time-of-flight mass spectrometry (MALDI-TOF MS)
    • Grosse-Herrenthey A, Maier T, Gessler F, Schaumann R, Bohnel H, et al. (2008) Challenging the problem of clostridial identification with matrix-assisted laser desorption and ionization-time-of-flight mass spectrometry (MALDI-TOF MS). Anaerobe 14: 242-249.
    • (2008) Anaerobe , vol.14 , pp. 242-249
    • Grosse-Herrenthey, A.1    Maier, T.2    Gessler, F.3    Schaumann, R.4    Bohnel, H.5
  • 7
    • 80053560148 scopus 로고    scopus 로고
    • Rapid species specific identification and subtyping of Yersinia enterocolitica by MALDI-TOF mass spectrometry
    • Stephan R, Cernela N, Ziegler D, Pfluger V, Tonolla M, et al. (2011) Rapid species specific identification and subtyping of Yersinia enterocolitica by MALDI-TOF mass spectrometry. J Microbiol Methods 87: 150-153.
    • (2011) J Microbiol Methods , vol.87 , pp. 150-153
    • Stephan, R.1    Cernela, N.2    Ziegler, D.3    Pfluger, V.4    Tonolla, M.5
  • 8
    • 79551471850 scopus 로고    scopus 로고
    • Determination of serotypes of Shiga toxin-producing Escherichia coli isolates by intact cell matrix-assisted laser desorption ionization-time of flight mass spectrometry
    • Karger A, Ziller M, Bettin B, Mintel B, Schares S, et al. (2011) Determination of serotypes of Shiga toxin-producing Escherichia coli isolates by intact cell matrix-assisted laser desorption ionization-time of flight mass spectrometry. Appl Environ Microbiol 77: 896-905.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 896-905
    • Karger, A.1    Ziller, M.2    Bettin, B.3    Mintel, B.4    Schares, S.5
  • 9
    • 79960081828 scopus 로고    scopus 로고
    • Rapid screening of epidemiologically important Salmonella enterica subsp. Enterica serovars by whole-cell matrix-assisted laser desorption ionization-time of flight mass spectrometry
    • Dieckmann R, Malorny B (2011) Rapid screening of epidemiologically important Salmonella enterica subsp. enterica serovars by whole-cell matrix-assisted laser desorption ionization-time of flight mass spectrometry. Appl Environ Microbiol 77: 4136-4146.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 4136-4146
    • Dieckmann, R.1    Malorny, B.2
  • 10
    • 85027939468 scopus 로고    scopus 로고
    • Recognition of Clostridium difficile PCR-ribotypes 001, 027 and 126/078 using an extended MALDI-TOF MS system
    • Reil M, Erhard M, Kuijper EJ, Kist M, Zaiss H, et al. (2011) Recognition of Clostridium difficile PCR-ribotypes 001, 027 and 126/078 using an extended MALDI-TOF MS system. Eur J Clin Microbiol Infect Dis 30: 1431-1436.
    • (2011) Eur J Clin Microbiol Infect Dis , vol.30 , pp. 1431-1436
    • Reil, M.1    Erhard, M.2    Kuijper, E.J.3    Kist, M.4    Zaiss, H.5
  • 11
    • 78649634917 scopus 로고    scopus 로고
    • MALDI-TOF MS fingerprinting allows for discrimination of major methicillinresistant Staphylococcus aureus lineages
    • Wolters M, Rohde H, Maier T, Belmar-Campos C, Franke G, et al. (2011) MALDI-TOF MS fingerprinting allows for discrimination of major methicillinresistant Staphylococcus aureus lineages. Int J Med Microbiol 301: 64-68.
    • (2011) Int J Med Microbiol , vol.301 , pp. 64-68
    • Wolters, M.1    Rohde, H.2    Maier, T.3    Belmar-Campos, C.4    Franke, G.5
  • 12
    • 84859842102 scopus 로고    scopus 로고
    • Characterization of a Staphylococcus aureus USA300 protein signature using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
    • Boggs SR, Cazares LH, Drake R (2012) Characterization of a Staphylococcus aureus USA300 protein signature using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. J Med Microbiol 61: 640-644.
    • (2012) J Med Microbiol , vol.61 , pp. 640-644
    • Boggs, S.R.1    Cazares, L.H.2    Drake, R.3
  • 13
    • 80955168000 scopus 로고    scopus 로고
    • Epidemic profile of Shiga-toxin-producing Escherichia coli O104:H4 outbreak in Germany
    • Frank C, Werber D, Cramer JP, Askar M, Faber M, et al. (2011) Epidemic profile of Shiga-toxin-producing Escherichia coli O104:H4 outbreak in Germany. N Engl J Med 365: 1771-1780.
    • (2011) N Engl J Med , vol.365 , pp. 1771-1780
    • Frank, C.1    Werber, D.2    Cramer, J.P.3    Askar, M.4    Faber, M.5
  • 14
    • 80052173621 scopus 로고    scopus 로고
    • Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4
    • Rohde H, Qin J, Cui Y, Li D, Loman NJ, et al. (2011) Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. N Engl J Med 365: 718-724.
    • (2011) N Engl J Med , vol.365 , pp. 718-724
    • Rohde, H.1    Qin, J.2    Cui, Y.3    Li, D.4    Loman, N.J.5
  • 15
    • 67649392794 scopus 로고    scopus 로고
    • Phylogenetic classification and identification of bacteria by mass spectrometry
    • Freiwald A, Sauer S (2009) Phylogenetic classification and identification of bacteria by mass spectrometry. Nat Protoc 4: 732-742.
    • (2009) Nat Protoc , vol.4 , pp. 732-742
    • Freiwald, A.1    Sauer, S.2
  • 16
    • 84865548780 scopus 로고    scopus 로고
    • MALDIquant: A versatile R package for the analysis of mass spectrometry data
    • Gibb S, Strimmer K (2012) MALDIquant: a versatile R package for the analysis of mass spectrometry data. Bioinformatics 28: 2270-2271.
    • (2012) Bioinformatics , vol.28 , pp. 2270-2271
    • Gibb, S.1    Strimmer, K.2
  • 19
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins DN, Pappin DJ, Creasy DM, Cottrell JS (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20: 3551-3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 21
    • 79960609901 scopus 로고    scopus 로고
    • Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology
    • Mellmann A, Harmsen D, Cummings CA, Zentz EB, Leopold SR, et al. (2011) Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology. PLoS One 6: e22751.
    • (2011) PLoS One , vol.6
    • Mellmann, A.1    Harmsen, D.2    Cummings, C.A.3    Zentz, E.B.4    Leopold, S.R.5
  • 22
    • 80051804184 scopus 로고    scopus 로고
    • Characterisation of the Escherichia coli strain associated with an outbreak of haemolytic uraemic syndrome in Germany, 2011: A microbiological study
    • Bielaszewska M, Mellmann A, Zhang W, Kock R, Fruth A, et al. (2011) Characterisation of the Escherichia coli strain associated with an outbreak of haemolytic uraemic syndrome in Germany, 2011: a microbiological study. Lancet Infect Dis 11: 671-676.
    • (2011) Lancet Infect Dis , vol.11 , pp. 671-676
    • Bielaszewska, M.1    Mellmann, A.2    Zhang, W.3    Kock, R.4    Fruth, A.5
  • 23
    • 80052225195 scopus 로고    scopus 로고
    • Identification of the Shiga toxin-producing Escherichia coli O104:H4 strain responsible for a food poisoning outbreak in Germany by PCR
    • Qin J, Cui Y, Zhao X, Rohde H, Liang T, et al. (2011) Identification of the Shiga toxin-producing Escherichia coli O104:H4 strain responsible for a food poisoning outbreak in Germany by PCR. J Clin Microbiol 49: 3439-3440.
    • (2011) J Clin Microbiol , vol.49 , pp. 3439-3440
    • Qin, J.1    Cui, Y.2    Zhao, X.3    Rohde, H.4    Liang, T.5
  • 24
    • 41749108874 scopus 로고    scopus 로고
    • Shiga toxin-mediated hemolytic uremic syndrome: Time to change the diagnostic paradigm?
    • Bielaszewska M, Kock R, Friedrich AW, von Eiff C, Zimmerhackl LB, et al. (2007) Shiga toxin-mediated hemolytic uremic syndrome: time to change the diagnostic paradigm? PLoS One 2: e1024.
    • (2007) PLoS One , vol.2
    • Bielaszewska, M.1    Kock, R.2    Friedrich, A.W.3    Von Eiff, C.4    Zimmerhackl, L.B.5
  • 25
    • 33745282930 scopus 로고    scopus 로고
    • Sex and virulence in Escherichia coli: An evolutionary perspective
    • Wirth T, Falush D, Lan R, Colles F, Mensa P, et al. (2006) Sex and virulence in Escherichia coli: an evolutionary perspective. Mol Microbiol 60: 1136-1151.
    • (2006) Mol Microbiol , vol.60 , pp. 1136-1151
    • Wirth, T.1    Falush, D.2    Lan, R.3    Colles, F.4    Mensa, P.5
  • 26
    • 79952709519 scopus 로고    scopus 로고
    • pROC: An open-source package for R and S+ to analyze and compare ROC curves
    • Robin X, Turck N, Hainard A, Tiberti N, Lisacek F, et al. (2011) pROC: an open-source package for R and S+ to analyze and compare ROC curves. BMC Bioinformatics 12: 77.
    • (2011) BMC Bioinformatics , vol.12 , pp. 77
    • Robin, X.1    Turck, N.2    Hainard, A.3    Tiberti, N.4    Lisacek, F.5
  • 27
    • 80053345905 scopus 로고    scopus 로고
    • SignalP 4.0: Discriminating signal peptides from transmembrane regions
    • Petersen TN, Brunak S, von Heijne G, Nielsen H (2011) SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 8: 785-786.
    • (2011) Nat Methods , vol.8 , pp. 785-786
    • Petersen, T.N.1    Brunak, S.2    Von Heijne, G.3    Nielsen, H.4
  • 28
    • 77954199597 scopus 로고    scopus 로고
    • PSORTb 3.0: Improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
    • Yu NY, Wagner JR, Laird MR, Melli G, Rey S, et al. (2010) PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinformatics 26: 1608-1615.
    • (2010) Bioinformatics , vol.26 , pp. 1608-1615
    • Yu, N.Y.1    Wagner, J.R.2    Laird, M.R.3    Melli, G.4    Rey, S.5
  • 29
    • 0037701544 scopus 로고    scopus 로고
    • Molecular analysis of the copper-transporting efflux system CusCFBA of Escherichia coli
    • Franke S, Grass G, Rensing C, Nies DH (2003) Molecular analysis of the copper-transporting efflux system CusCFBA of Escherichia coli. J Bacteriol 185: 3804-3812.
    • (2003) J Bacteriol , vol.185 , pp. 3804-3812
    • Franke, S.1    Grass, G.2    Rensing, C.3    Nies, D.H.4
  • 30
    • 79951680941 scopus 로고    scopus 로고
    • Ribosomal protein profiling by matrix-assisted laser desorption/ ionization time-of-flight mass spectrometry for phylogenety-based subspecies resolution of Bifidobacterium longum
    • Sato H, Teramoto K, Ishii Y, Watanabe K, Benno Y (2011) Ribosomal protein profiling by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for phylogenety-based subspecies resolution of Bifidobacterium longum. Syst Appl Microbiol 34: 76-80.
    • (2011) Syst Appl Microbiol , vol.34 , pp. 76-80
    • Sato, H.1    Teramoto, K.2    Ishii, Y.3    Watanabe, K.4    Benno, Y.5
  • 31
    • 79951681083 scopus 로고    scopus 로고
    • Evaluation of matrix-assisted laser desorption ionization-time of flight whole cell profiles for assessing the cultivable diversity of aerobic and moderately halophilic prokaryotes thriving in solar saltern sediments
    • Munoz R, Lopez-Lopez A, Urdiain M, Moore ER, Rossello-Mora R (2011) Evaluation of matrix-assisted laser desorption ionization-time of flight whole cell profiles for assessing the cultivable diversity of aerobic and moderately halophilic prokaryotes thriving in solar saltern sediments. Syst Appl Microbiol 34: 69-75.
    • (2011) Syst Appl Microbiol , vol.34 , pp. 69-75
    • Munoz, R.1    Lopez-Lopez, A.2    Urdiain, M.3    Moore, E.R.4    Rossello-Mora, R.5
  • 32
    • 84858702154 scopus 로고    scopus 로고
    • Taxonomic characterisation of Pseudomonas strain L48 and formal proposal of Pseudomonas entomophila sp. Nov
    • Mulet M, Gomila M, Lemaitre B, Lalucat J, Garcia-Valdes E (2012) Taxonomic characterisation of Pseudomonas strain L48 and formal proposal of Pseudomonas entomophila sp. nov. Syst Appl Microbiol 35: 145-149.
    • (2012) Syst Appl Microbiol , vol.35 , pp. 145-149
    • Mulet, M.1    Gomila, M.2    Lemaitre, B.3    Lalucat, J.4    Garcia-Valdes, E.5
  • 33
    • 84863097942 scopus 로고    scopus 로고
    • Rapid Discrimination of Salmonella enterica Serovar Typhi from Other Serovars by MALDI-TOF Mass Spectrometry
    • Kuhns M, Zautner AE, Rabsch W, Zimmermann O, Weig M, et al. (2012) Rapid Discrimination of Salmonella enterica Serovar Typhi from Other Serovars by MALDI-TOF Mass Spectrometry. PLoS One 7: e40004.
    • (2012) PLoS One , vol.7
    • Kuhns, M.1    Zautner, A.E.2    Rabsch, W.3    Zimmermann, O.4    Weig, M.5
  • 34
    • 77950436748 scopus 로고    scopus 로고
    • Rapid identification of protein biomarkers of Escherichia coli O157:H7 by matrix-assisted laser desorption ionization-time-of-flight-time-of-flight mass spectrometry and top-down proteomics
    • Fagerquist CK, Garbus BR, Miller WG, Williams KE, Yee E, et al. (2010) Rapid identification of protein biomarkers of Escherichia coli O157:H7 by matrix-assisted laser desorption ionization-time-of-flight-time-of-flight mass spectrometry and top-down proteomics. Anal Chem 82: 2717-2725.
    • (2010) Anal Chem , vol.82 , pp. 2717-2725
    • Fagerquist, C.K.1    Garbus, B.R.2    Miller, W.G.3    Williams, K.E.4    Yee, E.5
  • 35
    • 0035865172 scopus 로고    scopus 로고
    • Characterization of the protein subset desorbed by MALDI from whole bacterial cells
    • Ryzhov V, Fenselau C (2001) Characterization of the protein subset desorbed by MALDI from whole bacterial cells. Anal Chem 73: 746-750.
    • (2001) Anal Chem , vol.73 , pp. 746-750
    • Ryzhov, V.1    Fenselau, C.2
  • 36
    • 84859324209 scopus 로고    scopus 로고
    • Alignment-free design of highly discriminatory diagnostic primer sets for Escherichia coli O104:H4 outbreak strains
    • Pritchard L, Holden NJ, Bielaszewska M, Karch H, Toth IK (2012) Alignment-free design of highly discriminatory diagnostic primer sets for Escherichia coli O104:H4 outbreak strains. PLoS One 7: e34498.
    • (2012) PLoS One , vol.7
    • Pritchard, L.1    Holden, N.J.2    Bielaszewska, M.3    Karch, H.4    Toth, I.K.5
  • 37
    • 84865180022 scopus 로고    scopus 로고
    • Use of matrix-assisted laser desorption ionization-time of flight mass spectrometry to identify vancomycin-resistant enterococci and investigate the epidemiology of an outbreak
    • Griffin PM, Price GR, Schooneveldt JM, Schlebusch S, Tilse MH, et al. (2012) Use of matrix-assisted laser desorption ionization-time of flight mass spectrometry to identify vancomycin-resistant enterococci and investigate the epidemiology of an outbreak. J Clin Microbiol 50: 2918-2931.
    • (2012) J Clin Microbiol , vol.50 , pp. 2918-2931
    • Griffin, P.M.1    Price, G.R.2    Schooneveldt, J.M.3    Schlebusch, S.4    Tilse, M.H.5


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