Rapid identification of viridans streptococci by mass spectrometric discrimination

Journal of Clinical Microbiology

Volumn 45, Issue 8, 2007, Pages 2392-2397

  Friedrichs, C ^a   Rodloff, A C ^a   Chhatwal, G S ^b   Schellenberger, W ^a   Eschrich, K ^a  

^a UNIVERSITY OF LEIPZIG   (Germany)

^b HELMHOLTZ CENTRE FOR INFECTION RESEARCH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ABSCESS; ALPHA HEMOLYTIC STREPTOCOCCUS; ARTICLE; BACTERIAL ENDOCARDITIS; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; GENOTYPE PHENOTYPE CORRELATION; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PRIORITY JOURNAL; RELIABILITY; SEPTICEMIA; STREPTOCOCCUS CONSTELLATUS; STREPTOCOCCUS GORDONII; STREPTOCOCCUS INTERMEDIUS; STREPTOCOCCUS MITIS; STREPTOCOCCUS MUTANS; STREPTOCOCCUS ORALIS; STREPTOCOCCUS PARASANGUINIS; STREPTOCOCCUS SALIVARIUS; STREPTOCOCCUS SANGUINIS; SYSTEMIC DISEASE;

BACTERIAL TYPING TECHNIQUES; HUMANS; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; STREPTOCOCCAL INFECTIONS; VIRIDANS STREPTOCOCCI;

STREPTOCOCCUS SALIVARIUS;

EID: 34548086791     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.00556-07     Document Type: Article

References (32)

1. Ahmed, R. A., T. J. Marrie, and J. Q. Huang. 2006. Thoracic empyema in patients with community-acquired pneumonia. Am. J. Med. 119:877-883.
2. Anhalt, J. P., and C. Fenselau. 1975. Identification of bacteria using mass spectrometry. Anal. Chem. 47:219-225.
3. Brigante, G., F. Luzzaro, and A. Bettaccini. 2006. Use of the Phoenix automated system for identification of Streptococcus and Enterococcus spp. J. Clin. Microbiol. 44:3263-3267.
4. Bright, J. J., M. A. Claydon, M. Soufian, and D. B. Gordon. 2002. Rapid typing of bacteria using matrix-assisted laser desorption ionisation time-of-flight mass spectrometry and pattern recognition software. J. Microbiol. Methods 48:127-138.
5. Brosius, J., T. J. Dull, D. D. Sleeter, and H. F. Noller. 1981. Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J. Mol. Biol. 148:107-127.
6. Cain, T. C., D. M. Lubman, and J. W. Weber. 1994. Differentiation of bacteria using protein profiles from matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Commun. Mass Spectrom. 8:1026-1030.
7. Chen, C. C., L. J. Teng, and T. C. Chang. 2004. Identification of clinically relevant viridans group streptococci by sequence analysis of the 16S-23S ribosomal DNA spacer region. J. Clin. Microbiol. 42:2651-2657.
8. Claydon, M. A., S. N. Davey, V. Edwards-Jones, and D. B. Gordon. 1996. The rapid identification of intact microorganisms using mass spectrometry. Nat. Biotechnol. 14:1584-1586.
9. Douglas, C. W., J. Heath, K. K. Hampton, and F. E. Preston. 1993. Identity of viridans streptococci isolated from cases of infective endocarditis. J. Med. Microbiol. 39:179-182.
10. Flynn, C. E., and K. L. Ruoff. 1995. Identification of "Streptococcus milleri" group isolates to the species level with a commercially available rapid test system. J. Clin. Microbiol. 33:2704-2706.
11. Garnier, F., G. Gerbaud, P. Courvalin, and M. Galimand. 1997. Identification of clinically relevant viridans group streptococci to the species level by PCR. J. Clin. Microbiol. 35:2337-2341.
12. Guo, J., H. Chen, Z. Sun, and Y. Lin. 2004. A novel method for protein secondary structure prediction using dual-layer SVM and profiles. Proteins 54:738-743.
13. Han, X. Y., M. Kamana, and K. V. Rolston. 2006. Viridans streptococci isolated by culture from blood of cancer patients: clinical and microbiologic analysis of 50 cases. J. Clin. Microbiol. 44:160-165.
14. Hoshino, T., M. Kawaguchi, N. Shimizu, N. Hoshino, T. Ooshima, and T. Fujiwara. 2004. PCR detection and identification of oral streptococci in saliva samples using gtf genes. Diagn. Microbiol. Infect. Dis. 48:195-199.
15. Jarman, K. H., S. T. Cebula, A. J. Saenz, C. E. Peterson, N. B. Valentine, M. T. Kingsley, and K. L. Wahl. 2000. An algorithm for automated bacterial identification using matrix-assisted laser desorption/ionisation mass spectrometry. Anal. Chem. 72:1217-1223.
16. Kawamura, Y., X. G. Hou, F. Sultana, H. Miura, and T. Ezaki. 1995. Determination of 16S rRNA sequences of Streptococcus mitis and Streptococcus gordonii and phylogenetic relationships among members of the genus Streptococcus. Int. J. Syst. Bacteriol. 45:406-408.
17. Kiymaz, N., and O. Demir. 2005. Spontaneous cervical paraspinal and epidural giant abscess in a child - case report. Neurol. Med. Chir. 45:540-542.
18. Kumar, M., P. Vairamani, M. Raju, N. P. Lobo, C. Anbumani, N. Girish Kumar, C. P. Menon, and S. Shanmugasundaram. 2004. Rapid discrimination between strains of beta haemolytic streptococci by intact cell mass spectrometry. Indian J. Med. Res. 119:283-288.
19. Lay, J. O., Jr. 2001. MALDI-TOF mass spectrometry of bacteria. Mass Spectrom. Rev. 20:172-194.
20. Magee, J. T., E. A. Randle, S. J. Gray, and S. K. Jackson. 1993. Pyrolysis mass spectrometry characterisation and numerical taxonomy of Aeromonas spp. Antoine Leeuwenhoek 64:315-323.
21. Pignone, M., K. M. Greth, J. Cooper, D. Emerson, and J. Tang. 2006. Identification of mycobacteria by matrix-assisted laser desorption ionization-time-of-flight mass spectrometry. J. Clin. Microbiol. 44:1963-1970.
22. Pineda, F. J., J. S. Lin, C. Fenselau, and P. A. Demirev. 2000. Testing the significance of microorganism identification by mass spectrometry and proteome database search. Anal. Chem. 72:3739-3744.
23. Poyart, C., G. Quesne, S. Coulon, P. Berche, and P. Trieu-Cuot. 1998. Identification of streptococci to species level by sequencing the gene encoding the manganese-dependent superoxide dismutase. J. Clin. Microbiol. 36:41-47.
24. Razonable, R. R., M. R. Litzow, Y. Khaliq, K. E. Piper, M. S. Rouse, and R. Patel. 2002. Bacteremia due to viridans group streptococci with diminished susceptibility to levofloxacin among neutropenic patients receiving levofloxacin prophylaxis. Clin. Infect. Dis. 34:1469-1474.
25. Rupf, S., K. Breitung, W. Schellenberger, K. Merte, S. Kneist, and K. Eschrich. 2005. Differentiation of mutans streptococci by intact cell matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Oral Microbiol. Immunol. 20:267-273.
26. Ryzhov, V., Y. Hathout, and C. Fenselau. 2000. Rapid characterization of spores of Bacillus cereus group bacteria by matrix-assisted laser desorption-ionization time-of-flight mass spectrometry. Appl. Environ. Microbiol. 66:3828-3834.
27. Takao, A., H. Nagamune, and N. Maeda. 2004. Identification of the anginosus group within the genus Streptococcus using polymerase chain reaction. FEMS Microbiol. Lett. 233:83-89.
28. Teng, L. J., P. R. Hsueh, J. C. Tsai, P. W. Chen, J. C. Hsu, H. C. Lai, C. N. Lee, and S. W. Ho. 2002. groESL sequence determination, phylogenetic analysis, and species differentiation for viridans group streptococci. J. Clin. Microbiol. 40:3172-3178.
29. Van Baar, B. L. M. 2000. Characterisation of bacteria by matrix-assisted laser desorption/ionisation and electrospray mass spectrometry. FEMS Microbiol. Rev. 24:193-219.
30. Vapnik, V. N. 1995. The nature of statistical learning theory. Springer-Verlag, Berlin, Germany.
31. Wieten, G., J. Haverkamp, H. W. Engel, and L. G. Berwarld. 1981. Application of pyrolysis mass spectrometry to the classification and identification of mycobacteria. Rev. Infect. Dis. 2:871-877.
32. Yao, Z. P., C. Afonso, and C. Fenselau. 2002. Rapid microorganism identification with on-slide proteolytic digestion followed by matrix-assisted laser desorption/ionization tandem mass spectrometry and database searching. Rapid Commun. Mass Spectrom. 16:1953-1956.