메뉴 건너뛰기




Volumn 98, Issue 12, 2014, Pages 5685-5696

Occurrence and diversity of nitrite-dependent anaerobic methane oxidation bacteria in the sediments of the South China Sea revealed by amplification of both 16S rRNA and pmoA genes

Author keywords

Anaerobic methane oxidation; Distribution; Diversity; Marine; n damo; pmoA gene; South China Sea

Indexed keywords

GENES; OXIDATION; RNA; SOCIAL SCIENCES;

EID: 84903818313     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-014-5733-4     Document Type: Article
Times cited : (92)

References (48)
  • 1
    • 12344260827 scopus 로고    scopus 로고
    • Temporal and spatial changes in plankton respiration and biomass in the Canary Islands region: The effect of mesoscale variability
    • DOI 10.1016/j.jmarsys.2004.07.004, PII S0924796304002088
    • Aristegui J, Montero MF (2005) Temporal and spatial changes in plankton respiration and biomass in the Canary Islands region: the effect of mesoscale variability. J Mar Syst 54:65-82 (Pubitemid 40118298)
    • (2005) Journal of Marine Systems , vol.54 , Issue.1-4 SPEC. ISS. , pp. 65-82
    • Aristegui, J.1    Montero, M.F.2
  • 2
    • 17844377909 scopus 로고    scopus 로고
    • Anoxic carbon degradation in Arctic sediments: Microbial transformations of complex substrates
    • DOI 10.1016/j.gca.2004.11.011, PII S0016703704008877
    • Arnosti C, Finke N, Larsen O, Ghobrial S (2005) Anoxic carbon degradation in Arctic sediments: microbial transformations of complex substrates. Geochim Cosmochim Acta 69:2309-2320 (Pubitemid 40595472)
    • (2005) Geochimica et Cosmochimica Acta , vol.69 , Issue.9 , pp. 2309-2320
    • Arnosti, C.1    Finke, N.2    Larsen, O.3    Ghobrial, S.4
  • 3
    • 84883315635 scopus 로고    scopus 로고
    • Seafloor oxygen consumption fuelled by methane from cold seeps
    • Boetius A, Wenzhofer F (2013) Seafloor oxygen consumption fuelled by methane from cold seeps. Nat Geosci 6:725-734
    • (2013) Nat Geosci , vol.6 , pp. 725-734
    • Boetius, A.1    Wenzhofer, F.2
  • 6
    • 0001463548 scopus 로고
    • Non-parametric estimation of the number of classes in a population
    • Chao A (1984) Non-parametric estimation of the number of classes in a population. Scand J Stat 11:265-270
    • (1984) Scand J Stat , vol.11 , pp. 265-270
    • Chao, A.1
  • 7
    • 84903816380 scopus 로고    scopus 로고
    • Existence of novel phylotypes of nitrite-dependent anaerobic methane-oxidizing bacteria in surface and subsurface sediments of the South China Sea
    • In press
    • Chen J, Jiang XW, Gu JD (2014) Existence of novel phylotypes of nitrite-dependent anaerobic methane-oxidizing bacteria in surface and subsurface sediments of the South China Sea. Geomicrobiol J (In press)
    • (2014) Geomicrobiol J
    • Chen, J.1    Jiang, X.W.2    Gu, J.D.3
  • 8
    • 0037191822 scopus 로고    scopus 로고
    • Respiration in the open ocean
    • del Giorgio PA, Duarte CM(2002) Respiration in the open ocean. Nature 420:379-384
    • (2002) Nature , vol.420 , pp. 379-384
    • Del Giorgio, P.A.1    Duarte, C.M.2
  • 10
    • 79960100830 scopus 로고    scopus 로고
    • Anaerobic oxidation of methane in sediments of Lake Constance, an oligotrophic freshwater lake
    • Deutzmann JS, Schink B (2011) Anaerobic oxidation of methane in sediments of Lake Constance, an oligotrophic freshwater lake. Appl Environ Microbiol 77:4429-4436
    • (2011) Appl Environ Microbiol , vol.77 , pp. 4429-4436
    • Deutzmann, J.S.1    Schink, B.2
  • 14
    • 34748886657 scopus 로고    scopus 로고
    • PAST: Paleontological statistics software package for education and data analysis
    • Hammer Ø, Harper DAT, Ryan PD (2001) PAST: paleontological statistics software package for education and data analysis. Paleontol Electron 4:9
    • (2001) Paleontol Electron , vol.4 , pp. 9
    • Hammer, Ø.1    Harper, D.A.T.2    Ryan, P.D.3
  • 15
    • 84888203780 scopus 로고    scopus 로고
    • A newly designed degenerate PCR primer based on pmoA gene for detection of nitrite-dependent anaerobic methaneoxidizing bacteria from different ecological niches
    • Han P, Gu JD (2013) A newly designed degenerate PCR primer based on pmoA gene for detection of nitrite-dependent anaerobic methaneoxidizing bacteria from different ecological niches. Appl Microbiol Biotechnol 97:10155-10162
    • (2013) Appl Microbiol Biotechnol , vol.97 , pp. 10155-10162
    • Han, P.1    Gu, J.D.2
  • 17
    • 84883325422 scopus 로고    scopus 로고
    • Mdodeling a nitrite-dependent anaerobic methane oxidation process: Parameters identification and model evaluation
    • He Z, Cai C, Geng S, Lou L, Xu X, Zheng P, Hu B (2013) Mdodeling a nitrite-dependent anaerobic methane oxidation process: parameters identification and model evaluation. Bioresour Technol 147:315-320
    • (2013) Bioresour Technol , vol.147 , pp. 315-320
    • He, Z.1    Cai, C.2    Geng, S.3    Lou, L.4    Xu, X.5    Zheng, P.6    Hu, B.7
  • 18
    • 0028791540 scopus 로고
    • Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionarily related
    • Holmes AJ, Costello A, Lidstrom ME, Murrell JC (1995) Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionarily related. FEMS Microbiol Lett 132:203-208
    • (1995) FEMS Microbiol Lett , vol.132 , pp. 203-208
    • Holmes, A.J.1    Costello, A.2    Lidstrom, M.E.3    Murrell, J.C.4
  • 20
    • 34548737680 scopus 로고    scopus 로고
    • Feast and famine - Microbial life in the deep-sea bed
    • DOI 10.1038/nrmicro1745, PII NRMICRO1745
    • Jorgensen BB, Boetius A (2007) Feast and famine - microbial life in the deep-sea bed. Nat Rev Microbiol 5:770-781 (Pubitemid 47423765)
    • (2007) Nature Reviews Microbiology , vol.5 , Issue.10 , pp. 770-781
    • Jorgensen, B.B.1    Boetius, A.2
  • 21
    • 84875619226 scopus 로고    scopus 로고
    • MAFFT Multiple Sequence Alignment Software Version 7: Improvements in performance and usability
    • Katoh K, Standley DM (2013) MAFFT Multiple Sequence Alignment Software Version 7: improvements in performance and usability. Mol Biol Evol 30:772-780
    • (2013) Mol Biol Evol , vol.30 , pp. 772-780
    • Katoh, K.1    Standley, D.M.2
  • 22
    • 84861659957 scopus 로고    scopus 로고
    • Distribution of putative denitrifying methane oxidizing bacteria in sediment of a freshwater lake, Lake Biwa
    • Kojima H, Tsutsumi M, Ishikawa K, Iwata T, Mussmann M, Fukui M (2012) Distribution of putative denitrifying methane oxidizing bacteria in sediment of a freshwater lake, Lake Biwa. Syst Appl Microbiol 35:233-238
    • (2012) Syst Appl Microbiol , vol.35 , pp. 233-238
    • Kojima, H.1    Tsutsumi, M.2    Ishikawa, K.3    Iwata, T.4    Mussmann, M.5    Fukui, M.6
  • 24
    • 84873551743 scopus 로고    scopus 로고
    • Diversity, abundance, and distribution of NO-forming nitrite reductase-encoding genes in deep-sea subsurface sediments of the South China Sea
    • Li M, Hong Y, Cao H, Klotz MG, Gu JD (2013a) Diversity, abundance, and distribution of NO-forming nitrite reductase-encoding genes in deep-sea subsurface sediments of the South China Sea. Geobiology 11:170-179
    • (2013) Geobiology , vol.11 , pp. 170-179
    • Li, M.1    Hong, Y.2    Cao, H.3    Klotz, M.G.4    Gu, J.D.5
  • 25
    • 84880048169 scopus 로고    scopus 로고
    • Community structures and distribution of anaerobic ammonium oxidizing and nirS-rncoding nitrite-reducing bacteria in surface sediments of the South China Sea
    • Li M, Hong YG, Cao HL, Gu JD (2013b) Community structures and distribution of anaerobic ammonium oxidizing and nirS-rncoding nitrite-reducing bacteria in surface sediments of the South China Sea. Microb Ecol 66:281-296
    • (2013) Microb Ecol , vol.66 , pp. 281-296
    • Li, M.1    Hong, Y.G.2    Cao, H.L.3    Gu, J.D.4
  • 26
    • 84901687741 scopus 로고    scopus 로고
    • Molecular evidence for nitritedependent anaerobic methane-oxidising bacteria in the Jiaojiang Estuary of the East Sea (China)
    • doi: 10.1007/s00253-00014-05556-00253
    • Li-Dong S, Qun Z, Shuai L, Ping D, Jiang-Ning Z, Dong-Qing C, Xiang- Yang X, Ping Z, Bao-Lan H (2014) Molecular evidence for nitritedependent anaerobic methane-oxidising bacteria in the Jiaojiang Estuary of the East Sea (China). Appl Microbiol Biotechnol. doi: 10.1007/s00253-00014-05556-00253
    • (2014) Appl Microbiol Biotechnol
    • Li-Dong, S.1    Qun, Z.2    Shuai, L.3    Ping, D.4    Jiang-Ning, Z.5    Dong-Qing, C.6    Xiang- Yang, X.7    Ping, Z.8    Bao-Lan, H.9
  • 27
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: A new phylogenetic method for comparing microbial communities
    • DOI 10.1128/AEM.71.12.8228-8235.2005
    • Lozupone C, Knight R (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71: 8228-8235 (Pubitemid 41803949)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.12 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 28
    • 33748713890 scopus 로고    scopus 로고
    • UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context
    • Lozupone C, Hamady M, Knight R (2006) UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinforma 7:371
    • (2006) BMC Bioinforma , vol.7 , pp. 371
    • Lozupone, C.1    Hamady, M.2    Knight, R.3
  • 33
  • 34
    • 34247847886 scopus 로고    scopus 로고
    • Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre
    • DOI 10.1111/j.1462-2920.2007.01239.x
    • Mincer TJ, Church MJ, Taylor LT, Preston C, Kar DM, DeLong EF (2007) Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre. Environ Microbiol 9:1162-1175 (Pubitemid 46697272)
    • (2007) Environmental Microbiology , vol.9 , Issue.5 , pp. 1162-1175
    • Mincer, T.J.1    Church, M.J.2    Taylor, L.T.3    Preston, C.4    Karl, D.M.5    DeLong, E.F.6
  • 37
    • 84894237530 scopus 로고    scopus 로고
    • Distribution and diversity of nitrite-dependent anaerobic methane-oxidising bacteria in the sediments of the Qiantang River
    • Shen LD, Liu S, Zhu Q, Li XY, Cai C, Cheng DQ, Lou LP, Xu XY, Zheng P, Hu BL (2013) Distribution and diversity of nitrite-dependent anaerobic methane-oxidising bacteria in the sediments of the Qiantang River. Microb Ecol 67:341-349
    • (2013) Microb Ecol , vol.67 , pp. 341-349
    • Shen, L.D.1    Liu, S.2    Zhu, Q.3    Li, X.Y.4    Cai, C.5    Cheng, D.Q.6    Lou, L.P.7    Xu, X.Y.8    Zheng, P.9    Hu, B.L.10
  • 38
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.Mol Biol Evol 28:2731-2739
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 39
    • 84867952331 scopus 로고    scopus 로고
    • Co-occurrence and distribution of nitrite-dependent anaerobic ammonium and methane oxidizing bacteria in a paddy soil
    • Wang Y, Zhu G, Harhangi HR, Zhu B, Jetten MS, Yin C, Op den Camp HJ (2012) Co-occurrence and distribution of nitrite-dependent anaerobic ammonium and methane oxidizing bacteria in a paddy soil. FEMS Microbiol Lett 336:79-88
    • (2012) FEMS Microbiol Lett , vol.336 , pp. 79-88
    • Wang, Y.1    Zhu, G.2    Harhangi, H.R.3    Zhu, B.4    Jetten, M.S.5    Yin, C.6    Op Den Camp, H.J.7
  • 40
    • 0025573652 scopus 로고
    • A geochemial perspective of natural gas and atmospheric methane
    • Whiticar ML (1990) A geochemial perspective of natural gas and atmospheric methane. Org Geochem 16:531-547
    • (1990) Org Geochem , vol.16 , pp. 531-547
    • Whiticar, M.L.1
  • 41
    • 84856186358 scopus 로고    scopus 로고
    • DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences
    • Wright ES, Yilmaz LS, Noguera DR (2012) DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences. Appl Environ Microbiol 78:717-725
    • (2012) Appl Environ Microbiol , vol.78 , pp. 717-725
    • Wright, E.S.1    Yilmaz, L.S.2    Noguera, D.R.3
  • 42
    • 79551503528 scopus 로고    scopus 로고
    • A new intra-aerobic metabolism in the nitrite-dependent anaerobic methane-oxidizing bacterium Candidatus 'Methylomirabilis oxyfera'
    • Wu ML, Ettwig KF, Jetten MS, Strous M, Keltjens JT, van Niftrik L (2011) A new intra-aerobic metabolism in the nitrite-dependent anaerobic methane-oxidizing bacterium Candidatus 'Methylomirabilis oxyfera'. Biochem Soc Trans 39:243-248
    • (2011) Biochem Soc Trans , vol.39 , pp. 243-248
    • Wu, M.L.1    Ettwig, K.F.2    Jetten, M.S.3    Strous, M.4    Keltjens, J.T.5    Van Niftrik, L.6
  • 44
    • 84870394033 scopus 로고    scopus 로고
    • Cooccurrence of nitrite-dependent anaerobic methane oxidizing and anaerobic ammonia oxidizing bacteria in two Qinghai-Tibetan saline lakes
    • Yang J, Jiang HC, Wu G, Hou WG, Sun YJ, Lai ZP, Dong HL (2012) Cooccurrence of nitrite-dependent anaerobic methane oxidizing and anaerobic ammonia oxidizing bacteria in two Qinghai-Tibetan saline lakes. Front Earth Sci 6:383-391
    • (2012) Front Earth Sci , vol.6 , pp. 383-391
    • Yang, J.1    Jiang, H.C.2    Wu, G.3    Hou, W.G.4    Sun, Y.J.5    Lai, Z.P.6    Dong, H.L.7
  • 45
    • 33644606606 scopus 로고    scopus 로고
    • FastGroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries
    • Yu YN, Breitbart M, McNairnie P, Rohwer F (2006) FastGroupII: a web-based bioinformatics platform for analyses of large 16S rDNA libraries. BMC Bioinforma 7:57
    • (2006) BMC Bioinforma , vol.7 , pp. 57
    • Yu, Y.N.1    Breitbart, M.2    McNairnie, P.3    Rohwer, F.4
  • 46
    • 74649084843 scopus 로고    scopus 로고
    • Stimulation of in vitro anaerobic oxidation of methane rate in a continuous high-pressure bioreactor
    • Zhang Y, Henriet JP, Bursens J, Boon N (2010) Stimulation of in vitro anaerobic oxidation of methane rate in a continuous high-pressure bioreactor. Bioresour Technol 101:3132-3138
    • (2010) Bioresour Technol , vol.101 , pp. 3132-3138
    • Zhang, Y.1    Henriet, J.P.2    Bursens, J.3    Boon, N.4
  • 48
    • 84878247824 scopus 로고    scopus 로고
    • Molecular detection of denitrifying anaerobic oxidizing bacteria in the sediment of West Lake, Hangzhou
    • Zhu Q, Shen LD, Hu BL, Lou LP, Cheng DQ (2013b) Molecular detection of denitrifying anaerobic oxidizing bacteria in the sediment of West Lake, Hangzhou. Acta Sci Circumst 33:1321-1325
    • (2013) Acta Sci Circumst , vol.33 , pp. 1321-1325
    • Zhu, Q.1    Shen, L.D.2    Hu, B.L.3    Lou, L.P.4    Cheng, D.Q.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.