The Biological Reference Repository (BioR): A rapid and flexible system for genomics annotation

Bioinformatics

Volumn 30, Issue 13, 2014, Pages 1920-1922

  Kocher, Jean Pierre A ^a   Quest, Daniel J ^a   Duffy, Patrick ^a   Meiners, Michael A ^a   Moore, Raymond M ^a   Rider, David ^a   Hossain, Asif ^a   Hart, Steven N ^a   Dinu, Valentin ^b  

^a MAYO CLINIC   (United States)

^b ARIZONA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER PROGRAM; GENOMICS;

GENOMICS; SOFTWARE DESIGN;

EID: 84903742530     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu137     Document Type: Article

References (8)

1. Asmann, Y.W. et al. (2012) TREAT: A bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data. Bioinformatics, 28, 277-278
2. Belleau, F. et al. (2008) Bio2RDF: Towards a mashup to build bioinformatics knowledge systems. J. Biomed. Inform., 41, 706-716
3. Cingolani, P. et al. (2012) A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly (Austin), 6, 80-92
4. Danecek, P. et al. (2011) The variant call format and VCFtools. Bioinformatics, 27, 2156-2158
5. Kent, W.J. et al. (2002) The human genome browser at UCSC. Genome Res., 12, 996-1006
6. Li, H. (2011) Tabix: Fast retrieval of sequence features from generic TAB-delimited files. Bioinformatics, 27, 718-719
7. Paila, U. et al. (2013) GEMINI: Integrative exploration of genetic variation and genome annotations. PLoS Comput. Biol., 9, e1003153
8. Wang, K. et al. (2010) ANNOVAR: Functional annotation of genetic variants from high-Throughput sequencing data. Nucleic Acids Res., 38, e164.