Viral etiology and seasonality of influenza-like illness in Gabon, March 2010 to June 2011

BMC Infectious Diseases

Volumn 14, Issue 1, 2014, Pages

  Lekana Douki, Sonia E ^a   Nkoghe, Dieudonné ^a,b   Drosten, Christian ^c   Ngoungou, Edgar B ^d   Drexler, Jan F ^c   Leroy, Eric M ^a,e  

^a CENTRE INTERNATIONAL DE RECHERCHES MÉDICALES DE FRANCEVILLE   (Gabon)

^b Ministère de la Santé Publique   (Gabon)

^c UNIVERSITY OF BONN   (Germany)

^d Département Epidémiologie Biostatistiques Université de Medecine   (Gabon)

^e INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

Author keywords

Gabon; Influenza like illness; Seasonality; Surveillance network; Viruses

Indexed keywords

ADENOVIRUS; ADOLESCENT; ADULT; AGED; ARTICLE; CHILD; CONTROLLED STUDY; CORONAVIRUS; DISEASE SURVEILLANCE; ENTEROVIRUS; FEMALE; FLU LIKE SYNDROME; GABON; HUMAN; HUMAN CORONAVIRUS 229E; HUMAN CORONAVIRUS HKU1; HUMAN CORONAVIRUS NL63; HUMAN CORONAVIRUS OC43; HUMAN METAPNEUMOVIRUS; INFLUENZA VIRUS A H1N1; INFLUENZA VIRUS A H3N2; INFLUENZA VIRUS B; MAJOR CLINICAL STUDY; MALE; NONHUMAN; NOSE SMEAR; PARAINFLUENZA VIRUS 1; PARAINFLUENZA VIRUS 2; PARAINFLUENZA VIRUS 3; PARAINFLUENZA VIRUS 4; PARECHOVIRUS; RESPIRATORY SYNCYTIAL PNEUMOVIRUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RHINOVIRUS; SEASONAL VARIATION; VIRUS ETIOLOGY; ADENOVIRIDAE; HUMAN RESPIRATORY SYNCYTIAL VIRUS; INFANT; INFLUENZA, HUMAN; ISOLATION AND PURIFICATION; MIDDLE AGED; ORTHOMYXOVIRIDAE; PRESCHOOL CHILD; RESPIRATORY TRACT INFECTIONS; RESPIROVIRUS; SEASON; VERY ELDERLY; VIROLOGY;

ADENOVIRIDAE; ADOLESCENT; ADULT; AGED; AGED, 80 AND OVER; CHILD; CHILD, PRESCHOOL; ENTEROVIRUS; FEMALE; GABON; HUMANS; INFANT; INFLUENZA, HUMAN; MALE; MIDDLE AGED; ORTHOMYXOVIRIDAE; RESPIRATORY SYNCYTIAL VIRUSES; RESPIRATORY TRACT INFECTIONS; RESPIROVIRUS; SEASONS;

EID: 84903663659     PISSN: None     EISSN: 14712334     Source Type: Journal    
DOI: 10.1186/1471-2334-14-373     Document Type: Article

References (69)

1. Williams BG, Gouws E, Boschi-Pinto C, Bryce J, Dye C. Estimates of world-wide distribution of child deaths from acute respiratory infections. Lancet Infect Dis 2002, 2(1):25-32.
2. Tregoning JS, Schwarze J. Respiratory viral infections in infants: causes, clinical symptoms, virology, and immunology. Clin Microbiol Rev 2010, 23(1):74-98.
3. Hilgenfeld R, Peiris JS. From SARS to MERS: 10 years of research on highly pathogenic human coronaviruses. Antiviral Res 2013, 100(1):286-295.
4. Liao Q, Bai T, Zhou L, Vong S, Guo J, Lv W, Dong L, Xiang N, Li Z, Huai Y, Zhou J, Li X, Chen RY, Xu Z, Uyeki TM, Shu Y, Yu H. Seroprevalence of Antibodies to Highly Pathogenic Avian Influenza A (H5N1) Virus among Close Contacts Exposed to H5N1 Cases, China, 2005-2008. PLoS One 2013, 8(8):e71765.
5. Poovorawan Y, Pyungporn S, Prachayangprecha S, Makkoch J. Global alert to avian influenza virus infection: From H5N1 to H7N9. Pathog Glob Health 2013, 107(5):217-223.
6. World, Health, Organization Cumulate number of confirmed human cases for avian influenza A(H5N1) reported to WHO, 2003-2013 Available: http://www.who.int/influenza/human_animal_interface/EN_GIP_20130604CumulativeNumberH5N1cases.pdf. Accessed 2013 June 16. 2013, World, Health, Organization.
7. Dawood FS, Jain S, Finelli L, Shaw MW, Lindstrom S, Garten RJ, Gubareva LV, Xu X, Bridges CB, Uyeki TM. Emergence of a novel swine-origin influenza A (H1N1) virus in humans. N Engl J Med 2009, 360(25):2605-2615.
8. World, Health, Organization Pandemic (H1N1) 2009 - update 112. 2010, Available: http://www.who.int/csr/don/2010_08_06/en/index.html, World, Health, Organization.
9. Freitas FT. Sentinel surveillance of influenza and other respiratory viruses, Brazil, 2000-2010. Braz J Infect Dis 2013, 17(1):62-68.
10. Luksic I, Kearns PK, Scott F, Rudan I, Campbell H, Nair H. Viral etiology of hospitalized acute lower respiratory infections in children under 5 years of age - a systematic review and meta-analysis. Croat Med J 2013, 54(2):122-134.
11. Members of the Western Pacific Region Global Influenza Surveillance and Response System Epidemiological and virological characteristics of influenza in the Western Pacific Region of the World Health Organization, 2006-2010. PLoS One 2012, 7(5):e37568. Members of the Western Pacific Region Global Influenza Surveillance and Response System.
12. Shek LP, Lee BW. Epidemiology and seasonality of respiratory tract virus infections in the tropics. Paediatr Respir Rev 2003, 4(2):105-111.
13. Ahmed JA, Katz MA, Auko E, Njenga MK, Weinberg M, Kapella BK, Burke H, Nyoka R, Gichangi A, Waiboci LW, Mahamud A, Qassim M, Swai B, Wagacha B, Mutonga D, Nguhi M, Breiman RF, Eidex RB. Epidemiology of respiratory viral infections in two long-term refugee camps in Kenya, 2007-2010. BMC Infect Dis 2012, 12:7.
14. Hombrouck A, Sabbe M, Van Casteren V, Wuillaume F, Hue D, Reynders M, Gerard C, Brochier B, Van Eldere J, Van Ranst M, Thomas I. Viral aetiology of influenza-like illness in Belgium during the influenza A(H1N1)2009 pandemic. Eur J Clin Microbiol Infect Dis 2012, 31(6):999-1007.
15. Peng D, Zhao D, Liu J, Wang X, Yang K, Xicheng H, Li Y, Wang F. Multipathogen infections in hospitalized children with acute respiratory infections. Virol J 2009, 6:155.
16. Razanajatovo NH, Richard V, Hoffmann J, Reynes JM, Razafitrimo GM, Randremanana RV, Heraud JM. Viral etiology of influenza-like illnesses in Antananarivo, Madagascar, July 2008 to June 2009. PLoS One 2011, 6(3):e17579.
17. Schlaudecker EP, Heck JP, Macintyre ET, Martinez R, Dodd CN, McNeal MM, Staat MA, Heck JE, Steinhoff MC. Etiology and Seasonality of Viral Respiratory Infections in Rural Honduran Children. Pediatr Infect Dis J 2012, 31(11):1113-1118.
18. Talbot HK, Shepherd BE, Crowe JE, Griffin MR, Edwards KM, Podsiad AB, Tollefson SJ, Wright PF, Williams JV. The pediatric burden of human coronaviruses evaluated for twenty years. Pediatr Infect Dis J 2009, 28(8):682-687.
19. Doraisingham S, Goh KT, Ling AE, Yu M. Influenza surveillance in Singapore: 1972-86. Bull World Health Organ 1988, 66(1):57-63.
20. Dosseh A, Ndiaye K, Spiegel A, Sagna M, Mathiot C. Epidemiological and virological influenza survey in Dakar, Senegal: 1996-1998. Am J Trop Med Hyg 2000, 62(5):639-643.
21. de Arruda E, Hayden FG, McAuliffe JF, de Sousa MA, Mota SB, McAuliffe MI, Geist FC, Carvalho EP, Fernandes MC, Guerrant RL, Jack M, Gwaltney J. Acute respiratory viral infections in ambulatory children of urban northeast Brazil. J Infect Dis 1991, 164(2):252-258.
22. Radin JM, Katz MA, Tempia S, Talla Nzussouo N, Davis R, Duque J, Adedeji A, Adjabeng MJ, Ampofo WK, Ayele W, Bakamutumaho B, Barakat A, Cohen AL, Cohen C, Dalhatu IT, Daouda C, Dueger E, Francisco M, Heraud JM, Jima D, Kabanda A, Kadjo H, Kandeel A, Bi Shamamba SK, Kasolo F, Kronmann KC, Mazaba Liwewe ML, Lutwama JJ, Matonya M, Mmbaga V. Influenza surveillance in 15 countries in Africa, 2006-2010. J Infect Dis 2012, 206(Suppl 1):S14-21.
23. Njouom R, Yekwa EL, Cappy P, Vabret A, Boisier P, Rousset D. Viral etiology of influenza-like illnesses in Cameroon, January-December 2009. J Infect Dis 2012, 206(Suppl 1):S29-35.
24. Lekana-Douki SE, Mouinga-Ondeme A, Nkoghe D, Drosten C, Drexler JF, Kazanji M, Leroy EM. Early introduction and delayed dissemination of pandemic influenza. Gabon Emerg Infect Dis 2013, 19(4):644-647.
25. République Gabonaise Recensement de la population gabonaise. J officiel de la République Gabonaise 2005, n°2:12-16. République Gabonaise.
26. Panning M, Eickmann M, Landt O, Monazahian M, Olschlager S, Baumgarte S, Reischl U, Wenzel JJ, Niller HH, Gunther S, Hollmann B, Huzly D, Drexler JF, Helmer A, Becker S, Matz B, Eis-Hubinger A, Drosten C. Detection of influenza A(H1N1)v virus by real-time RT-PCR. Euro Surveill 2009, 14(36). pii 19329, article 3.
27. Heim A, Ebnet C, Harste G, Pring-Akerblom P. Rapid and quantitative detection of human adenovirus DNA by real-time PCR. J Med Virol 2003, 70(2):228-239.
28. Kuypers J, Wright N, Ferrenberg J, Huang ML, Cent A, Corey L, Morrow R. Comparison of real-time PCR assays with fluorescent-antibody assays for diagnosis of respiratory virus infections in children. J Clin Microbiol 2006, 44(7):2382-2388.
29. Kuypers J, Wright N, Morrow R. Evaluation of quantitative and type-specific real-time RT-PCR assays for detection of respiratory syncytial virus in respiratory specimens from children. J Clin Virol 2004, 31(2):123-129.
30. Dare R, Sanghavi S, Bullotta A, Keightley MC, George KS, Wadowsky RM, Paterson DL, McCurry KR, Reinhart TA, Husain S, Rinaldo CR. Diagnosis of human metapneumovirus infection in immunosuppressed lung transplant recipients and children evaluated for pertussis. J Clin Microbiol 2007, 45(2):548-552.
31. Panning M, Baumgarte S, Laue T, Bierbaum S, Raith S, Drexler JF, Helmer A, Falcone-Kapper V, Kochs G, Campe H, Huzly D, Eis-Hubinger AM, Drosten C. Singleplex real-time RT-PCR for detection of influenza A virus and simultaneous differentiation of A/H1N1v and evaluation of the RealStar influenza kit. J Clin Virol 2011, 50(2):171-174.
32. van Elden LJNM, Schipper P, Schuurman R, van Loon AM. Simultaneous detection of influenza viruses A and B using real-time quantitative PCR. J Clin Microbiol 2001, 39(1):196-200.
33. Dare RK, Fry AM, Chittaganpitch M, Sawanpanyalert P, Olsen SJ, Erdman DD. Human coronavirus infections in rural Thailand: a comprehensive study using real-time reverse-transcription polymerase chain reaction assays. J Infect Dis 2007, 196(9):1321-1328.
34. Lu X, Holloway B, Dare RK, Kuypers J, Yagi S, Williams JV, Hall CB, Erdman DD. Real-time reverse transcription-PCR assay for comprehensive detection of human rhinoviruses. J Clin Microbiol 2008, 46(2):533-539.
35. Baumgarte S, de Souza Luna LK, Grywna K, Panning M, Drexler JF, Karsten C, Huppertz HI, Drosten C. Prevalence, types, and RNA concentrations of human parechoviruses, including a sixth parechovirus type, in stool samples from patients with acute enteritis. J Clin Microbiol 2008, 46(1):242-248.
36. Dierssen U, Rehren F, Henke-Gendo C, Harste G, Heim A. Rapid routine detection of enterovirus RNA in cerebrospinal fluid by a one-step real-time RT-PCR assay. J Clin Virol 2008, 42(1):58-64.
37. Brittain-Long R, Nord S, Olofsson S, Westin J, Anderson LM, Lindh M. Multiplex real-time PCR for detection of respiratory tract infections. J Clin Virol 2008, 41(1):53-56.
38. Laguna-Torres VA, Gomez J, Aguilar PV, Ampuero JS, Munayco C, Ocana V, Perez J, Gamero ME, Arrasco JC, Paz I, Chavez E, Cruz R, Chavez J, Mendocilla S, Gomez E, Antigoni J, Gonzalez S, Tejada C, Chowell G, Kochel TJ. Changes in the viral distribution pattern after the appearance of the novel influenza A H1N1 (pH1N1) virus in influenza-like illness patients in Peru. PLoS One 2010, 5(7):e11719.
39. Puzelli S, Valdarchi C, Ciotti M, Dorrucci M, Farchi F, Babakir-Mina M, Perno CF, Donatelli I, Rezza G. Viral causes of influenza-like illness: Insight from a study during the winters 2004-2007. J Med Virol 2009, 81(12):2066-2071.
40. World, Health, Organization Pneumonia, Memo No.331 November 2012 2012, http://www.who.int/entity/mediacentre/factsheets/fs331/fr/, World, Health, Organization.
41. Khor CS, Sam IC, Hooi PS, Quek KF, Chan YF. Epidemiology and seasonality of respiratory viral infections in hospitalized children in Kuala Lumpur, Malaysia: a retrospective study of 27 years. BMC Pediatr 2012, 12:32.
42. Kwofie TB, Anane YA, Nkrumah B, Annan A, Nguah SB, Owusu M. Respiratory viruses in children hospitalized for acute lower respiratory tract infection in Ghana. Virol J 2012, 9:78.
43. Peltola V, Jartti T, Putto-Laurila A, Mertsola J, Vainionpaa R, Waris M, Hyypia T, Ruuskanen O. Rhinovirus infections in children: a retrospective and prospective hospital-based study. J Med Virol 2009, 81(10):1831-1838.
44. Nakoune E, Tricou V, Manirakiza A, Komoyo F, Selekon B, Gody JC, Victoir K, Buchy P, Kazanji M. First introduction of pandemic influenza A/H1N1 and detection of respiratory viruses in pediatric patients in Central African Republic. Virol J 2013, 10:49.
45. Muyembe Tamfum JJ, Nkwembe E, Bi Shamamba SK, Bankoshi F, Ilunga BK, Katz KA, Cohen AL, Kabamba J, Wemankoy EO. Sentinel surveillance for influenza-like illness, severe acute respiratory illness, and laboratory-confirmed influenza in Kinshasa, Democratic Republic of Congo, 2009-2011. J Infect Dis 2012, 206(Suppl 1):S36-40.
46. Cherian T, Simoes EA, Steinhoff MC, Chitra K, John M, Raghupathy P, John TJ. Bronchiolitis in tropical south India. Am J Dis Child 1990, 144(9):1026-1030.
47. Freymuth F, Vabret A, Dina J, Cuvillon-Nimal D, Lubin C, Vaudecrane A, Guillois B, Gouarin S, Petitjean J, Lafaix-Delaire F, Brouard J. [Bronchiolitis viruses]. Arch Pediatr 2010, 17(8):1192-1201.
48. Straliotto SM, Siqueira MM, Muller RL, Fischer GB, Cunha ML, Nestor SM. Viral etiology of acute respiratory infections among children in Porto Alegre, RS. Brazil Rev Soc Bras Med Trop 2002, 35(4):283-291.
49. Chan PW, Goh AY, Chua KB, Kharullah NS, Hooi PS. Viral aetiology of lower respiratory tract infection in young Malaysian children. J Paediatr Child Health 1999, 35(3):287-290.
50. Huang G, Yu D, Mao N, Zhu Z, Zhang H, Jiang Z, Li H, Zhang Y, Shi J, Zhang S, Wang X, Xu W. Viral etiology of acute respiratory infection in gansu province, china, 2011. PLoS One 2013, 8(5):e64254.
51. Thiberville SD, Ninove L, Vu Hai V, Botelho-Nevers E, Gazin C, Thirion L, Salez N, de Lamballerie X, Charrel R, Brouqui P. The viral etiology of an influenza-like illness during the 2009 pandemic. J Med Virol 2012, 84(7):1071-1079.
52. Berkley JA, Munywoki P, Ngama M, Kazungu S, Abwao J, Bett A, Lassauniere R, Kresfelder T, Cane PA, Venter M, Scott JA, Nokes DJ. Viral etiology of severe pneumonia among Kenyan infants and children. JAMA 2010, 303(20):2051-2057.
53. Srinivasan A, Flynn P, Gu Z, Hartford C, Lovins R, Sunkara A, Srivastava DK, Leung W, Hayden RT. Detection of respiratory viruses in asymptomatic children undergoing allogeneic hematopoietic cell transplantation. Pediatr Blood Cancer 2013, 60(1):149-151.
54. Thavagnanam S, Christie SN, Doherty GM, Coyle PV, Shields MD, Heaney LG. Respiratory viral infection in lower airways of asymptomatic children. Acta Paediatr 2010, 99(3):394-398.
55. Lamarao LM, Ramos FL, Mello WA, Santos MC, Barbagelata LS, Justino MC, da Silva AF, Quaresma A, da Silva VB, Burbano RR, Linhares AC. Prevalence and clinical features of respiratory syncytial virus in children hospitalized for community-acquired pneumonia in northern Brazil. BMC Infect Dis 2012, 12:119.
56. Etemadi MR, Sekawi Z, Othman N, Lye MS, Moghaddam FY. Circulation of human respiratory syncytial virus strains among hospitalized children with acute lower respiratory infection in malaysia. Evol Bioinform Online 2013, 9:151-161.
57. Bharaj P, Sullender WM, Kabra SK, Mani K, Cherian J, Tyagi V, Chahar HS, Kaushik S, Dar L, Broor S. Respiratory viral infections detected by multiplex PCR among pediatric patients with lower respiratory tract infections seen at an urban hospital in Delhi from 2005 to 2007. Virol J 2009, 6:89.
58. Broor S, Parveen S, Bharaj P, Prasad VS, Srinivasulu KN, Sumanth KM, Kapoor SK, Fowler K, Sullender WM. A prospective three-year cohort study of the epidemiology and virology of acute respiratory infections of children in rural India. PLoS One 2007, 2(6):e491.
59. Hall CB. Respiratory syncytial virus and parainfluenza virus. N Engl J Med 2001, 344(25):1917-1928.
60. World, Health, Organization Percentage of specimen tested positive for influenza. Global health observatory map gallery. 2010-2011. http://gamapserver.who.int/mapLibrary/app/searchResults.aspx, World, Health, Organization.
61. Bigogo GM, Breiman RF, Feikin DR, Audi AO, Aura B, Cosmas L, Njenga MK, Fields BS, Omballa V, Njuguna H, Ochieng PM, Mogeni DO, Aol GO, Olack B, Katz MA, Montgomery JM, Burton DC. Epidemiology of respiratory syncytial virus infection in rural and urban Kenya. J Infect Dis 2013, 208(Suppl 3):S207-216.
62. Feikin DR, Olack B, Bigogo GM, Audi A, Cosmas L, Aura B, Burke H, Njenga MK, Williamson J, Breiman RF. The burden of common infectious disease syndromes at the clinic and household level from population-based surveillance in rural and urban Kenya. PLoS One 2011, 6(1):e16085.
63. Gordon A, Ortega O, Kuan G, Reingold A, Saborio S, Balmaseda A, Harris E. Prevalence and seasonality of influenza-like illness in children, Nicaragua, 2005-2007. Emerg Infect Dis 2009, 15(3):408-414.
64. Matthew J, Pinto Pereira LM, Pappas TE, Swenson CA, Grindle KA, Roberg KA, Lemanske RF, Lee WM, Gern JE. Distribution and seasonality of rhinovirus and other respiratory viruses in a cross-section of asthmatic children in Trinidad West Indies. Ital J Pediatr 2009, 35:16.
65. Jacques J, Moret H, Minette D, Leveque N, Jovenin N, Deslee G, Lebargy F, Motte J, Andreoletti L. Epidemiological, molecular, and clinical features of enterovirus respiratory infections in French children between 1999 and 2005. J Clin Microbiol 2008, 46(1):206-213.
66. Smuts HE, Workman LJ, Zar HJ. Human rhinovirus infection in young African children with acute wheezing. BMC Infect Dis 2011, 11:65.
67. Leung TF, Li CY, Lam WY, Wong GW, Cheuk E, Ip M, Ng PC, Chan PK. Epidemiology and clinical presentations of human coronavirus NL63 infections in hong kong children. J Clin Microbiol 2009, 47(11):3486-3492.
68. Camargo C, Guatura SB, Bellei N. Respiratory viral coinfection among hospitalized patients with H1N1 2009 during the first pandemic wave in Brazil. Braz J Infect Dis 2012, 16(2):180-183.
69. Papadopoulos NG, Moustaki M, Tsolia M, Bossios A, Astra E, Prezerakou A, Gourgiotis D, Kafetzis D. Association of rhinovirus infection with increased disease severity in acute bronchiolitis. Am J Respir Crit Care Med 2002, 165(9):1285-1289.