Circulation of human respiratory syncytial virus strains among hospitalized children with acute lower respiratory infection in Malaysia

Evolutionary Bioinformatics

Volumn 2013, Issue 9, 2013, Pages 151-161

  Etemadi, Mohammad Reza ^a   Sekawi, Zamberi ^a   Othman, Norlijah ^a   Lye, Munn Sann ^a   Moghaddam, Faezeh Yazdani ^b  

^a UNIVERSITY PUTRA MALAYSIA   (Malaysia)

^b FERDOWSI UNIVERSITY OF MASHHAD   (Iran)

Author keywords

Acute lower respiratory tract infections (ALRTIs); Human respiratory syncthial virus (RSV); Malaysia

Indexed keywords

GUANINE NUCLEOTIDE BINDING PROTEIN;

AMINO ACID ANALYSIS; AMINO ACID SUBSTITUTION; ARTICLE; BAYES THEOREM; CARBOXY TERMINAL SEQUENCE; CHILD; CHILD HOSPITALIZATION; G PROTEIN GENE; GENE; GENE AMPLIFICATION; GENE CLUSTER; GENE DUPLICATION; GENE SEQUENCE; GENETIC DISTANCE; GENETIC VARIABILITY; GENOTYPE; HUMAN; INFANT; LOWER RESPIRATORY TRACT INFECTION; MALAYSIA; NASOPHARYNGEAL ASPIRATION; NEIGHBOR JOINING METHOD; NONHUMAN; NUCLEOTIDE SEQUENCE; PARSIMONY ANALYSIS; PHYLOGENY; PRESCHOOL CHILD; PREVALENCE; RESPIRATORY SYNCYTIAL PNEUMOVIRUS; RESPIRATORY SYNCYTIAL VIRUS INFECTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; UNINDEXED SEQUENCE; VIRUS CLASSIFICATION; VIRUS DETECTION; VIRUS STRAIN;

EID: 84876170213     PISSN: 11769343     EISSN: None     Source Type: Journal    
DOI: 10.4137/EBO.S10999     Document Type: Article

References (38)

1. Grimwood K, Cohet C, Rich FJ, et al. Risk factors for respiratory syncytial virus bronchiolitis hospital admission in New Zealand. Epidemiol Infect. 2008;136:1333-41.
2. Hall CB, Weinberg GA, Iwane MK, Blumkin AK, Edwards KM, Staat MA, et al. The burden of respiratory syncytial virus infection in young children. N Engl J Med. 2009;360:588-98.
3. Richard N, Komurian-Pradel F, Javouhey E, et al. The impact of dual viral infection in infants admitted to a pediatric intensive care unit associated with severe bronchiolitis. Pediatr Infect Dis J. 2008;27:213-7.
4. Weber M, Hartley J, Ashworth M, Malone M, Sebire N. Virological investigations in sudden unexpected deaths in infancy (SUDI). Forensic Sci Med Pathol. 1998;6:261-7.
5. Peter LC. Respiratory Syncytial Virus and Metapneumovirus. In: Knipe DM, editor. Fields Virology, Vol. 1. 5th ed. Philadelphia, PA: Lippincott Williams & Wilkins; 2007:1603-45.
6. Prober CG. Respiratory Syncytial Virus. In: Long SS, editor. Principles and Practice of Pediatric Infectious Disease, 2nd ed. Philedelphia, PA: Churchill Livingstone; 2003:1645.
7. Mufson MA, Orvell C, Rafnar B, Norrby E. Two distinct subtypes of human respiratory syncytial virus. J Gen Virol. 1985;66:2111-24.
8. Anderson LJ, Hierholzer JC, Tsou C, et al. Antigenic characterization of respiratory syncytial virus strains with monoclonal antibodies. J Infect Dis. 1985;151:626-33.
9. Johnson PR, Spriggs MK, Olmsted RA, Collins PL. The G glycoprotein of human respiratory syncytial viruses of subgroups A and B: extensive sequence divergence between antigenically related proteins. Proc Natl Acad Sci U S A. 1987;84:5625-9.
10. Peret TCT, Hall CB, Hammond GW, et al. Circulation patterns of group A and B human respiratory syncytial virus genotypes in 5 communities in North America. J Infect Dis. 2000;181:1891-6.
11. Botosso VF, Paolo MA, Ueda M, et al. Positive selection results in frequent reversible amino acid replacements in the G protein gene of human respiratory syncytial virus. PLoS Pathog. 2009;5:e1000254.
12. Peret TC, Hall CB, Schnabel KC, Golub JA, Anderson LJ. Circulation patterns of genetically distinct group A and B strains of human respiratory syncytial virus in a community. J Gen Virol. 1998;79:2221-9.
13. Trento A, Viegas M, Galiano M, et al. Natural History of Human Respiratory Syncytial Virus Inferred from Phylogenetic Analysis of the Attachment (G) Glycoprotein with a 60-Nucleotide Duplication. J Virol. 2006;80:975-84.
14. Shobugawa Y, Saito R, Sano Y, et al. Emerging Genotypes of Human Syncytial Virus Subgroup A among Patients in Japan. J Clin Microbiol. 2009;47:2475-82.
15. Venter M, Madhi SA, Tiemessen CT, Schoub BD. Genetic diversity and molecular epidemiology of respiratory syncytial virus over four consecutive seasons in South Africa: identification of new subgroup A and B genotypes. J Gen Virol. 2001;82:2117-24.
16. Dapat IC, Shobugawa Y, Sano Y, et al. New genotypes within respiratory syncytial virus (RSV) Group B genotype BA in Niigata, Japan. J Clin Microbiol. 2010;48(9):3423-7.
17. Trento A, Galiano MN, Videla C, et al. Major changes in the G protein of human respiratory syncytial virus isolates introduced by a duplication of 60 nucleotides. J Gen Virol. 2003;84:3115-20.
18. Arnott A, Vong S, Mardy S, Chu S, Naughtin M, Sovann L, et al. A study of the genetic variability of human respiratory syncytial virus (HRSV) in Cambodia reveals the existence of a new HRSV group B genotype. J Clin Microbiol. 2011;49(10):3504-13.
19. Zhang Y, Xu W, Shen K, et al. Genetic variability of group A and B human respiratory syncytial viruses isolated from 3 provinces in China. Arch Virol. 2007;152:1425-34.
20. Zhang Z, Du L, Chen X, et al. Genetic variability of respiratory syncytial viruses (RSV) prevalent in Southwestern China from 2006 to 2009: emergence of subgroup B and A RSV as dominant strains. J Clin Microbiol. 2010;48:1201-7.
21. Bellau-Pujol S, Vabret A, Legrand L, et al. Development of three multiplex RT-PCR assays for the detection of 12 respiratory RNA viruses. J Virol Methods. 2005;126:53-63.
22. Allander T, Tammi MT, Eriksson M, Bjerkner A, Tiveljung-Lindell A, Andersson B. Cloning of a human parvovirus by molecular screening of respiratory tract samples. Proc Natl Acad Sci U S A. 2005;102:12891-6.
23. Lu X, Erdman DD. Molecular typing of human adenoviruses by PCR and sequencing of a partial region of the hexon gene. Arch Virol. 2006;151: 1587-602.
24. Saitou N, Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987;4:406-25.
25. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28:2731-9.
26. Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004;32:1792-7.
27. Posada D, Crandall KA. Modeltest: testing the model of DNA substitution. Bioinformatics. 1998;14:817-8.
28. Ronquist F, Huelsenbeck JP. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 2003;19:1572-4.
29. Chan P, Goh A, Chua KB, Kharullah NS, Hooi PS. Viral aetiology of lower respiratory tract infection in young Malaysian children. J Paediatr Child Health. 1999;35:287-90.
30. Zamberi S, Zulkifli I, Ilina I. Respiratory viruses detected in hospitalised paediatric patients with respiratory infections. Med J Malaysia. 2003;58: 681.
31. Nair H, Nokes DJ, Gessner BD, et al. Global burden of acute lower respiratory infections due to respiratory syncytial virus in young children: a systematic review and meta-analysis. Lancet. 2010;375:1545-55.
32. Martin WW, Mulholland EK, Brian MG. Respiratory syncytial virus infection in tropical and developing countries. Trop Med Int Health. 1998;3: 268-80.
33. Kuroiwa Y, Nagai K, Okita L, et al. A phylogenetic study of human respiratory syncytial viruses group A and B strains isolated in two cities in Japan from 1980-2002. J Med Virol. 2005;76:241-7.
34. Nagai K, Kamasaki H, Kuroiwa Y, Okita L, Tsutsumi H. Nosocomial outbreak of respiratory syncytial virus subgroup B variants with the 60 nucleotides-duplicated G protein gene. J Med Virol. 2004;74:161-5.
35. Parveen S, Sullender WM, Fowler K, Lefkowitz EJ, Kapoor SK, Broor S. Genetic variability in the G protein gene of group A and B respiratory syncytial viruses from India. J Clin Microbiol. 2006;44:3055-64.
36. Scott PD, Ochola R, Ngama M, et al. Molecular epidemiology of respiratory syncytial virus in Kilifi district, Kenya. J Med Virol. 2004;74:344-54.
37. Dapat IC, Shobugawa Y, Sano Y, et al. New genotypes within respiratory syncytial virus (RSV) Group B genotype BA in Niigata, Japan. J Clin Microbiol. 2010;48(9):3423-7.
38. Melero JA, Garcia-Barreno B, Martinez I, Pringle CR, Cane PA. Antigenic structure, evolution and immunobiology of human respiratory syncytial virus attachment (G) protein. J Gen Virol. 1997;78:2411-8.