Nucleobase-functionalized conjugated polymer for detection of copper(II)

ACS Applied Materials and Interfaces

Volumn 6, Issue 12, 2014, Pages 9601-9607

  Xing, Chengfen ^a   Yuan, Hongbo ^a   Xu, Sichuan ^b   An, Hailong ^a   Niu, Ruimin ^a   Zhan, Yong ^a  

^a HEBEI UNIVERSITY OF TECHNOLOGY   (China)

^b YUNNAN UNIVERSITY   (China)

Author keywords

conjugated polythiophene; fluorescence quenching; sensor; thymidine

Indexed keywords

QUENCHING; SENSORS;

FLUORESCENCE QUENCHING; FUNCTIONALIZED MATERIALS; POLY-THIOPHENE; STERIC INTERACTIONS; SUPRAMOLECULAR ORGANIZATIONS; SYNTHESIS AND CHARACTERIZATIONS; THIOPHENE DERIVATIVES; THYMIDINE;

IONS;

COPPER; DNA; ION; PHOSPHATE; POLYMER; THIOPHENE DERIVATIVE; THYMIDINE; WATER;

CHEMISTRY; FLUORESCENCE; SPECTROFLUOROMETRY;

COPPER; DNA; FLUORESCENCE; IONS; PHOSPHATES; POLYMERS; SPECTROMETRY, FLUORESCENCE; THIOPHENES; THYMIDINE; WATER;

EID: 84903530753     PISSN: 19448244     EISSN: 19448252     Source Type: Journal    
DOI: 10.1021/am502978w     Document Type: Article

References (33)

1. Thomas, S. W.; Joly, G. D.; Swager, T. M. Chemical Sensors Based on Amplifying Fluorescent Conjugated Polymers Chem. Rev. 2007, 107, 1339-1386
2. Zhu, C.; Liu, L.; Yang, Q.; Lv, F.; Wang, S. Water-Soluble Conjugated Polymers for Imaging, Diagnosis, and Therapy Chem. Rev. 2012, 112, 4687-4735
3. Feng, L.; Zhu, C.; Yuan, H.; Liu, L.; Lv, F.; Wang, S. Conjugated Polymer Nanoparticles: Preparation, Properties, Functionalization and Biological Applications Chem. Soc. Rev. 2013, 42, 6620-6633
4. Beaujuge, P. M.; Reynolds, J. R. Color Control in Pi-Conjugated Organic Polymers for Use in Electrochromic Devices Chem. Rev. 2010, 110, 268-320
5. Grimsdale, A. C.; Chan, K. L.; Martin, R. E.; Jokisz, P. G.; Holmes, A. B. Synthesis of Light-Emitting Conjugated Polymers for Applications in Electroluminescent Devices Chem. Rev. 2009, 109, 897-1091
6. Peet, J.; Heeger, A. J.; Bazan, G. C. Plastic″ Solar Cells: Self-Assembly of Bulk Heterojunction Nanomaterials by Spontaneous Phase Separation Acc. Chem. Res. 2009, 42, 1700-1708
7. Heeger, A. J.; Sariciftci, N. S.; Namdas, E. B. Semiconducting and Metallic Polymers, 1 st ed.; Oxford University Press: New York, 2010.
8. Thomas, S. W., III; Joly, G. D.; Swager, T. M. Chemical Sensors Based on Amplifying Fluorescent Conjugated Polymers Chem. Rev. 2007, 107, 1339-1386
9. Duan, X. R.; Liu, L. B.; Feng, F. D.; Wang, S. Cationic Conjugated Polymers for Optical Detection of DNA Methylation, Lesions, and Single Nucleotide Polymorphisms Acc. Chem. Res. 2010, 43, 260-270
10. Fan, L.-J.; Jones, W. E. A Highly Selective and Sensitive Inorganic/Organic Hybrid Polymer Fluorescence "Turn-on" Chemosensory System for Iron Cations J. Am. Chem. Soc. 2006, 128, 6784-6785
11. Mangeney, C.; Lacroix, J. C.; Chane-Ching, K. I.; Jouini, M.; Villain, F.; Ammar, S.; Jouini, N.; Lacaze, P. C. Conducting-Polymer Electrochemical Switching as an Easy Means for Control of the Molecular Properties of Grafted Transition Metal Complexes Chemistry 2001, 7, 5029-5040
12. Xing, C.; Yu, M.; Wang, S.; Shi, Z.; Li, Y.; Zhu, D. Fluorescence Turn-On Detection of Nitric Oxide in Aqueous Solution Using Cationic Conjugated Polyelectrolytes Macromol. Rapid Commun. 2007, 28, 241-245
13. Xing, C.; Shi, Z.; Yu, M.; Wang, S. Cationic Conjugated Polyelectrolyte-Based Fluorometric Detection of Copper(II) Ions in Aqueous Solution Polymer 2008, 49, 2698-2703
14. Zinchenko, A. A.; Baigl, D.; Chen, N.; Pyshkina, O.; Endo, K.; Sergeyev, V. G.; Yoshikawa, K. Conformational Behavior of Giant DNA through Binding with Ag+ and Metallization Biomacromolecules 2008, 9, 1981-1987
15. Li, G.; Liu, H.; Chen, X.; Zhang, L.; Bu, Y. Multi-Copper-Mediated DNA Base Pairs Acting as Suitable Building Blocks for the DNA-Based Nanowires J. Phys. Chem. C 2011, 115, 2855-2864
16. Mishra, A.; Ma, C.-Q.; Bäuerle, P. Functional Oligothiophenes: Molecular Design for Multidimensional Nanoarchitectures and Their Applications Chem. Rev. 2009, 109, 1141-1276
17. Osaka, I.; McCullough, R. D. Advances in Molecular Design and Synthesis of Regioregular Polythiophenes Acc. Chem. Res. 2008, 41, 1202-1214
18. Ho, H. A.; Najari, A.; Leclerc, M. Optical Detection of DNA and Proteins with Cationic Polythiophenes Acc. Chem. Res. 2008, 41, 168-178
19. Bäuerle, P.; Emge, A. Specific Recognition of Nucleobase- Functionalized Polythiophenes Adv. Mater. 1998, 3, 324-330
20. Bazaco, R. B.; Gómez, R.; Seoane, C.; Bäuerle, P.; Segura, J. L. Specific Recognition of a Nucleobase-Functionalized Poly(3,4- Ethylenedioxithiophene) (PEDOT) in Aqueous Media Tetrahedron Lett. 2009, 50, 4154-4157
21. Navacchia, M. L.; Favaretto, L.; Treossi, E.; Palermo, V.; Barbarella, G. Self-Complementary Nucleoside-Thiophene Hybrid Systems: Synthesis and Supramolecular Organization Macromol. Rapid Commun. 2010, 31, 351-355
22. Tang, Y.; He, F.; Yu, M.; Feng, F.; An, L.; Sun, H.; Wang, S.; Li, Y.; Zhu, D. A Reversible and Highly Selective Fluorescent Sensor for Mercury(II) Using Poly (Thiophene)S That Contain Thymine Moieties Macromol. Rapid Commun. 2006, 27, 389-392
23. Humphrey, W.; Dalke, A.; Schulten, K. VMD: Visual Molecular Dynamics J. Mol. Graphics 1996, 14, 33-38
24. Van Gunsteren, W. F. Biomolecular Simulation: The GROMOS96 Manual and User Guide, 1 st ed.; Verlag der Fachvereine Hochschulverlag AG an der ETH Zurich: Zurich, Switzerland, 1996.
25. Marrink, S. J.; Lindahl, E.; Edholm, O.; Mark, A. E. Simulation of the Spontaneous Aggregation of Phospholipids into Bilayers J. Am. Chem. Soc. 2001, 123, 8638-8639
26. Hess, B.; Bekker, H.; Berendsen, H. J. C.; Fraaije, J. LINCS: A Linear Constraint Solver for Molecular Simulations J. Comput. Chem. 1997, 18, 1463-1472
27. Berendsen, H. J. C.; Postma, J. P. M.; Vangunsteren, W. F.; Dinola, A.; Haak, J. R. Molecular Dynamics with Coupling to an External Bath J. Chem. Phys. 1984, 81, 3684-3690
28. Graves, A.; Shivakumar, D.; Boyce, S.; Jacobson, M.; Case, D.; Shoichet, B. Rescoring Docking Hit Lists for Model Cavity Sites: Predictions and Experimental Testing J. Mol. Biol. 2008, 377, 914-934
29. Pettersen, E. F.; Goddard, T. D.; Huang, C. C.; Couch, G. S.; Greenblatt, D. M.; Meng, E. C.; Ferrin, T. E. UCSF Chimera-a Visualization System for Exploratory Research and Analysis J. Comput. Chem. 2004, 25, 1605-1612
30. Chirakul, P.; Sigurdsson, S. T. Stereospecific Syntheses of 3'-Deuterated Pyrimidine Nucleosides and Their Site-Specific Incorporation into DNA Org. Lett. 2003, 5, 917-919
31. Chayer, M.; Faid, K.; Leclerc, M. Highly Conducting Water-Soluble Polythiophene Derivatives Chem. Mater. 1997, 9, 2902-2905
32. Van Der Spoel, D.; Lindahl, E.; Hess, B.; Groenhof, G.; Mark, A. E.; Berendsen, H. J. C. GROMACS: Fast, Flexible, and Free J. Comput. Chem. 2005, 26, 1701-1718
33. Berendsen, H. J. C.; Vanderspoel, D.; Vandrunen, R. GROMACS: A Message-passing Parallel Molecular Dynamics Implementation Comput. Phys. Commun. 1995, 91, 43-56