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Volumn 9, Issue 6, 2014, Pages

Comparison of deep-water viromes from the Atlantic Ocean and the Mediterranean Sea

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEAL VIRUS; ARTICLE; ASCOVIRUS; ATLANTIC OCEAN; BACTERIOPHAGE; COMPARATIVE STUDY; CONTROLLED STUDY; DEEP SEA; HYDROGRAPHY; INOVIRIDAE; MEDITERRANEAN SEA; MICROBIAL COMMUNITY; NONHUMAN; PHYCODNAVIRIDAE; POPULATION ABUNDANCE; SEQUENCE DATABASE; VIRUS DETECTION; BIODIVERSITY; CLASSIFICATION; DNA BASE COMPOSITION; ECOSYSTEM; GENETICS; METAGENOMICS; MICROBIOLOGY; VIRUS; VIRUS GENOME;

EID: 84903527526     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0100600     Document Type: Article
Times cited : (34)

References (36)
  • 1
    • 84883404871 scopus 로고    scopus 로고
    • Microbial control of the dark end of the biological pump
    • Herndl GJ, Reinthaler T (2013) Microbial control of the dark end of the biological pump. Nat Geosci 6: 718-724.
    • (2013) Nat Geosci , vol.6 , pp. 718-724
    • Herndl, G.J.1    Reinthaler, T.2
  • 3
    • 0025678006 scopus 로고
    • Warming trend in the western Mediterranean deep water
    • Béthoux JP, Gentili B, Raunet J, Tailliez D (1990) Warming trend in the western Mediterranen deep water. Nature 347: 660-662. (Pubitemid 120029000)
    • (1990) Nature , vol.347 , Issue.6294 , pp. 660-662
    • Bethoux, J.P.1    Gentili, B.2    Raunet, J.3    Tailliez, D.4
  • 4
    • 61649094707 scopus 로고    scopus 로고
    • Seasonal changes of bacterial and archaeal communities in the dark ocean: Evidence from the Mediterranean Sea
    • Winter C, Kerros M-E, Weinbauer MG (2009) Seasonal changes of bacterial and archaeal communities in the dark ocean: Evidence from the Mediterranean Sea. Limnol Oceanogr 54: 160-170.
    • (2009) Limnol Oceanogr , vol.54 , pp. 160-170
    • Winter, C.1    Kerros, M.-E.2    Weinbauer, M.G.3
  • 5
    • 71749111285 scopus 로고    scopus 로고
    • Seasonal and depth-related dynamics of prokaryotes and viruses in surface and deep waters of the northwestern Mediterranean Sea
    • Winter C, Kerros M-E, Weinbauer MG (2009) Seasonal and depth-related dynamics of prokaryotes and viruses in surface and deep waters of the northwestern Mediterranean Sea. Deep-Sea Res I 56: 1972-1982.
    • (2009) Deep-Sea Res I , vol.56 , pp. 1972-1982
    • Winter, C.1    Kerros, M.-E.2    Weinbauer, M.G.3
  • 6
    • 77958540602 scopus 로고    scopus 로고
    • Randomly amplified polymorphic DNA reveals tight links between viruses and microbes in the bathypelagic zone of the Northwestern Mediterranean Sea
    • Winter C, Weinbauer MG (2010) Randomly amplified polymorphic DNA reveals tight links between viruses and microbes in the bathypelagic zone of the Northwestern Mediterranean Sea. Appl Environ Microbiol 76: 6724-6732.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 6724-6732
    • Winter, C.1    Weinbauer, M.G.2
  • 7
    • 0033542481 scopus 로고    scopus 로고
    • Marine viruses and their biogeochemical and ecological effects
    • Fuhrman JA (1999) Marine viruses and their biogeochemical and ecological effects. Nature 399: 541-548.
    • (1999) Nature , vol.399 , pp. 541-548
    • Fuhrman, J.A.1
  • 8
    • 0032858844 scopus 로고    scopus 로고
    • Viruses and nutrient cycles in the sea
    • Wilhelm SW, Suttle CA (1999) Viruses and nutrient cycles in the sea. BioScience 49: 781-788. (Pubitemid 29456233)
    • (1999) BioScience , vol.49 , Issue.10 , pp. 781-788
    • Wilhelm, S.W.1    Suttle, C.A.2
  • 9
    • 34548792911 scopus 로고    scopus 로고
    • Marine viruses - major players in the global ecosystem
    • Suttle CA (2007) Marine viruses - major players in the global ecosystem. Nature Rev Microbiol 5: 801-812.
    • (2007) Nature Rev Microbiol , vol.5 , pp. 801-812
    • Suttle, C.A.1
  • 11
    • 77952670727 scopus 로고    scopus 로고
    • Viral and microbial community dynamics in four aquatic environments
    • Rodriguez-Brito B, Li LL, Wegley L, Furlan M, Angly F, et al. (2010) Viral and microbial community dynamics in four aquatic environments. ISME J 4: 739-751.
    • (2010) ISME J , vol.4 , pp. 739-751
    • Rodriguez-Brito, B.1    Li, L.L.2    Wegley, L.3    Furlan, M.4    Angly, F.5
  • 12
    • 20344382957 scopus 로고    scopus 로고
    • Here a virus, there a virus, everywhere the same virus?
    • DOI 10.1016/j.tim.2005.04.003, PII S0966842X05001083
    • Breitbart M, Rohwer F (2005) Here a virus, there a virus, everywhere the same virus? Trends Microbiol 13: 278-284. (Pubitemid 40779816)
    • (2005) Trends in Microbiology , vol.13 , Issue.6 , pp. 278-284
    • Breitbart, M.1    Rohwer, F.2
  • 13
    • 21844434913 scopus 로고    scopus 로고
    • Evolutionary origins of genomic repertoires in bacteria
    • Lerat E, Daubin V, Ochman H, Moran NA (2005) Evolutionary origins of genomic repertoires in bacteria. PLoS Biol 3: e130.
    • (2005) PLoS Biol , vol.3
    • Lerat, E.1    Daubin, V.2    Ochman, H.3    Moran, N.A.4
  • 14
    • 33748453207 scopus 로고    scopus 로고
    • On the origin of microbial ORFans: Quantifying the strength of the evidence for viral lateral transfer
    • Yin Y, Fischer D (2006) On the origin of microbial ORFans: quantifying the strength of the evidence for viral lateral transfer. BMC Evol Biol 6: 63.
    • (2006) BMC Evol Biol , vol.6 , pp. 63
    • Yin, Y.1    Fischer, D.2
  • 16
    • 0033826796 scopus 로고    scopus 로고
    • Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems
    • Thingstad TF (2000) Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems. Limnol Oceanogr 45: 1320-1328.
    • (2000) Limnol Oceanogr , vol.45 , pp. 1320-1328
    • Thingstad, T.F.1
  • 17
    • 77749309301 scopus 로고    scopus 로고
    • Trade-offs between competition and defense specialists among unicellular planktonic organisms: The "killing the winner" hypothesis revisited
    • Winter C, Bouvier T, Weinbauer MG, Thingstad TF (2010) Trade-offs between competition and defense specialists among unicellular planktonic organisms: the "killing the winner" hypothesis revisited. Microb Mol Biol Rev 74: 42-57.
    • (2010) Microb Mol Biol Rev , vol.74 , pp. 42-57
    • Winter, C.1    Bouvier, T.2    Weinbauer, M.G.3    Thingstad, T.F.4
  • 19
    • 78651277082 scopus 로고    scopus 로고
    • Water mass-specificty of bacterial communities in the North Atlantic revealed by massively parallel sequencing
    • Agogué H, Lamy D, Neal PR, Sogin M, Herndl GJ (2011) Water mass-specificty of bacterial communities in the North Atlantic revealed by massively parallel sequencing. Mol Ecol 20: 258-274.
    • (2011) Mol Ecol , vol.20 , pp. 258-274
    • Agogué, H.1    Lamy, D.2    Neal, P.R.3    Sogin, M.4    Herndl, G.J.5
  • 20
    • 0003244274 scopus 로고    scopus 로고
    • Enumeration of phytoplankton, bacteria, and viruses in marine samples
    • Robinson JP, Darzynkiewicz Z, Dean PN, Orfao A, Rabinovitch PS, Stewart CC, Tanke HJ, Wheeless LL, editors. New York: John Wiley & Sons
    • Marie D, Partensky F, Vaulot D, Brussaard CPD (1999) Enumeration of phytoplankton, bacteria, and viruses in marine samples. In: Robinson JP, Darzynkiewicz Z, Dean PN, Orfao A, Rabinovitch PS, Stewart CC, Tanke HJ, Wheeless LL, editors. Current protocols in cytometry. New York: John Wiley & Sons. pp. 11.11.1-11.11.15.
    • (1999) Current Protocols in Cytometry
    • Marie, D.1    Partensky, F.2    Vaulot, D.3    Brussaard, C.P.D.4
  • 21
    • 1642386112 scopus 로고    scopus 로고
    • Optimization of procedures for counting viruses by flow cytometry
    • Brussaard CPD (2004) Optimization of procedures for counting viruses by flow cytometry. Appl Environ Microbiol 70: 1506-1513.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 1506-1513
    • Brussaard, C.P.D.1
  • 22
    • 79952422304 scopus 로고    scopus 로고
    • Quality control and preprocessing of metagenomics datasets
    • Schmieder R, Edwards R (2011) Quality control and preprocessing of metagenomics datasets. Bioinformatics 27: 863-864.
    • (2011) Bioinformatics , vol.27 , pp. 863-864
    • Schmieder, R.1    Edwards, R.2
  • 23
    • 79952390994 scopus 로고    scopus 로고
    • Fast identification and removal of sequence contamination from genomic and metagenomic datasets
    • Schmieder R, Edwards R (2011) Fast identification and removal of sequence contamination from genomic and metagenomic datasets. PLoS ONE 6: e17288.
    • (2011) PLoS ONE , vol.6
    • Schmieder, R.1    Edwards, R.2
  • 24
    • 0032964297 scopus 로고    scopus 로고
    • BLAST 2 SEQUENCES, a new tool for comparing protein and nucleotide sequences
    • DOI 10.1016/S0378-1097(99)00149-4, PII S0378109799001494
    • Tatusova TA, Madden TL (1999) Blast 2 Sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol Lett 174: 247-250. (Pubitemid 29217013)
    • (1999) FEMS Microbiology Letters , vol.174 , Issue.2 , pp. 247-250
    • Tatusova, T.A.1    Madden, T.L.2
  • 25
    • 74549198200 scopus 로고    scopus 로고
    • The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes
    • Angly FE, Willner D, Prieto-Davó A, Edwards RA, Schmieder R, et al. (2009) The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. PLoS Comp Biol 5: e1000593.
    • (2009) PLoS Comp Biol , vol.5
    • Angly, F.E.1    Willner, D.2    Prieto-Davó, A.3    Edwards, R.A.4    Schmieder, R.5
  • 27
    • 84859436530 scopus 로고    scopus 로고
    • NCBI reference sequences (RefSeq): Current status, new features and genome annotation policy
    • Pruitt KD, Tatusova T, Brown GR, Maglott DR (2012) NCBI reference sequences (RefSeq): current status, new features and genome annotation policy. Nucl Acid Res 40: D130-D135.
    • (2012) Nucl Acid Res , vol.40
    • Pruitt, K.D.1    Tatusova, T.2    Brown, G.R.3    Maglott, D.R.4
  • 28
    • 33846057724 scopus 로고    scopus 로고
    • NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • DOI 10.1093/nar/gkl842
    • Pruitt KD, Tatusova T, Maglott DR (2007) NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucl Acid Res 35: D61-D65. (Pubitemid 46056171)
    • (2007) Nucleic Acids Research , vol.35 , Issue.SUPPL. 1
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 31
    • 0036273581 scopus 로고    scopus 로고
    • Full-depth profile (0-2000 m) of bacteria, heterotrophic nanoflagellates and ciliates in the NW Mediterranean Sea: Vertical partitioning of microbial trophic structures
    • DOI 10.1016/S0967-0645(02)00029-2, PII S0967064502000292
    • Tanaka T, Rassoulzadegan F (2002) Full-depth profile (0-2000 m) of bacteria, heterotrophic nanoflagellates and ciliates in the NW Mediterranean Sea: vertical partitioning of microbe trophic structures. Deep-Sea Res II 49: 2093-2107. (Pubitemid 34609047)
    • (2002) Deep-Sea Research Part II: Topical Studies in Oceanography , vol.49 , Issue.11 , pp. 2093-2107
    • Tanaka, T.1    Rassoulzadegan, F.2
  • 33
    • 84958101820 scopus 로고    scopus 로고
    • Ultrafiltration and its application to aquatic colloids
    • Wilkinson KJ, Lead JR, editors. Chichester: John Wiley & Sons
    • Guo L, Santschi PH (2007) Ultrafiltration and its application to aquatic colloids. In: Wilkinson KJ, Lead JR, editors. Environmental colloids and particles: behaviour, separation and characterisation, vol 10. Chichester: John Wiley & Sons. pp. 159-220.
    • (2007) Environmental Colloids and Particles: Behaviour, Separation and Characterisation , vol.10 , pp. 159-220
    • Guo, L.1    Santschi, P.H.2
  • 34
    • 48249105419 scopus 로고    scopus 로고
    • Taxonomic distribution of large DNA viruses in the sea
    • Monier A, Claverie J-M, Ogata H (2008) Taxonomic distribution of large DNA viruses in the sea. Genome Biol 9: R106.
    • (2008) Genome Biol , vol.9
    • Monier, A.1    Claverie, J.-M.2    Ogata, H.3
  • 35
    • 33845613147 scopus 로고    scopus 로고
    • Phage-Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences
    • DOI 10.1093/nar/gkl732
    • Fouts DE (2006) Phage-Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences. Nucl Acids Res 34: 5839-5851. (Pubitemid 44941163)
    • (2006) Nucleic Acids Research , vol.34 , Issue.20 , pp. 5839-5851
    • Fouts, D.E.1
  • 36
    • 1942521220 scopus 로고    scopus 로고
    • Genomic organization and molecular analysis of the inducible prophage EJ-1, a mosaic myovirus from an atypical pneumococcus
    • DOI 10.1016/j.virol.2004.01.029, PII S0042682204001199
    • Romero P, López R, García E (2004) Genomic organization and molecular analysis of the inducible prophage EJ-1, a mosaic myovirus from an atypical pneumococcus. Virology 322: 239-252. (Pubitemid 38521139)
    • (2004) Virology , vol.322 , Issue.2 , pp. 239-252
    • Romero, P.1    Lopez, R.2    Garcia, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.