메뉴 건너뛰기




Volumn 9, Issue 6, 2014, Pages

ITRAQ-based proteomics reveals novel members involved in pathogen challenge in sea cucumber Apostichopus japonicus

Author keywords

[No Author keywords available]

Indexed keywords

AGGRECAN; CELL PROTEIN; FASCIN; FASCIN 2; MICRORNA; MICRORNA 31; MYC PROTEIN; NESPRIN 3; OLOLFACTOMEDIN 1; PAXILLIN; PROTEIN ADAMTS7; PROTEIN CLEC4G; PROTEIN MIR 2008; PROTEIN NDRG1; UNCLASSIFIED DRUG; MESSENGER RNA;

EID: 84903386071     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0100492     Document Type: Article
Times cited : (71)

References (39)
  • 1
  • 3
    • 34547848735 scopus 로고    scopus 로고
    • Isolation and ultrastructure of an enveloped virus in cultured sea cucumber Apostichopus japonicus (Selenka)
    • Wang P, Chang Y, Xu G, Song L (2005) Isolation and ultrastructure of an enveloped virus in cultured sea cucumber Apostichopus japonicus (Selenka). Journal Fishery Sciences of China 12(6): 766-770.
    • (2005) Journal Fishery Sciences of China , vol.12 , Issue.6 , pp. 766-770
    • Wang, P.1    Chang, Y.2    Xu, G.3    Song, L.4
  • 4
    • 77954957644 scopus 로고    scopus 로고
    • Isolation and identification of causative pathogen for skin ulcerative syndrome in Apostichopus japonicus
    • Zhang C, Wang Y, Rong X (2006) Isolation and identification of causative pathogen for skin ulcerative syndrome in Apostichopus japonicus. Journal of Fishery China 30: 118-123.
    • (2006) Journal of Fishery China , vol.30 , pp. 118-123
    • Zhang, C.1    Wang, Y.2    Rong, X.3
  • 5
    • 58149124608 scopus 로고    scopus 로고
    • Bacterial pathogens of skin ulceration disease in cultured sea cucumber Apostichopus japonicus (Selenka) juveniles
    • Ma Y, Xu G, Chang Y, Zhang E, Zhou W, et al. (2006) Bacterial pathogens of skin ulceration disease in cultured sea cucumber Apostichopus japonicus (Selenka) juveniles. Journal of Dalian Ocean University Bullitin 21(1):13-18.
    • (2006) Journal of Dalian Ocean University Bullitin , vol.21 , Issue.1 , pp. 13-18
    • Ma, Y.1    Xu, G.2    Chang, Y.3    Zhang, E.4    Zhou, W.5
  • 6
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 7
    • 0033572284 scopus 로고    scopus 로고
    • The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation
    • 15
    • Olsen PH, Ambros V (1999) The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation. Dev Biol 15;216(2):671-680.
    • (1999) Dev Biol , vol.216 , Issue.2 , pp. 671-680
    • Olsen, P.H.1    Ambros, V.2
  • 8
    • 0037085968 scopus 로고    scopus 로고
    • Two genetic circuits repress the Caenorhabditis elegans heterochronic gene lin-28 after translation initiation
    • DOI 10.1006/dbio.2001.0563
    • Seggerson K, Tang L, Moss EG (2002) Two genetic circuits repress the Caenorhabditis elegans heterochronic gene lin-28 after translation initiation. Dev Biol. 2002 Mar 15;243(2):215-225. (Pubitemid 34218925)
    • (2002) Developmental Biology , vol.243 , Issue.2 , pp. 215-225
    • Seggerson, K.1    Tang, L.2    Moss, E.G.3
  • 9
    • 84875769575 scopus 로고    scopus 로고
    • Regulation of immune responses and tolerance: The microRNA perspective
    • Chen C, Schaffert S, Fragoso R, Loh C (2013) Regulation of immune responses and tolerance: the microRNA perspective. Immunological Review 253(1):112-128.
    • (2013) Immunological Review , vol.253 , Issue.1 , pp. 112-128
    • Chen, C.1    Schaffert, S.2    Fragoso, R.3    Loh, C.4
  • 10
    • 84885109272 scopus 로고    scopus 로고
    • MiR-184 regulates insulin secretion through repression of Slc25a22
    • Morita S, Horii T, Kimura M, Hatada I (2013) MiR-184 regulates insulin secretion through repression of Slc25a22. PeerJ 1: e162.
    • (2013) PeerJ , vol.1
    • Morita, S.1    Horii, T.2    Kimura, M.3    Hatada, I.4
  • 11
    • 79960072346 scopus 로고    scopus 로고
    • RNAi and cellular miRNAs in infections by mammalian viruses
    • Haasnoot J, Berkhout B (2011) RNAi and cellular miRNAs in infections by mammalian viruses. Methods in Molecular Biology 721: 23-41.
    • (2011) Methods in Molecular Biology , vol.721 , pp. 23-41
    • Haasnoot, J.1    Berkhout, B.2
  • 12
    • 3042767202 scopus 로고    scopus 로고
    • MicroRNAs: Small RNAs with a big role in gene regulation
    • DOI 10.1038/nrg1379
    • He L, Hannon GJ (2004) MicroRNAs: small RNAs with a big role in gene regulation. Nature Review Genetics 7: 522-531. (Pubitemid 38868508)
    • (2004) Nature Reviews Genetics , vol.5 , Issue.7 , pp. 522-531
    • He, L.1    Hannon, G.J.2
  • 13
    • 84863219439 scopus 로고    scopus 로고
    • Characterization of skin ulceration syndrome associated microRNAs in sea cucumber Apostichopus japonicus by deep sequencing
    • Li C, Feng W, Qiu L, Xia C, Su X, et al. (2012) Characterization of skin ulceration syndrome associated microRNAs in sea cucumber Apostichopus japonicus by deep sequencing. Fish and Shellfish Immunology 33: 436-441.
    • (2012) Fish and Shellfish Immunology , vol.33 , pp. 436-441
    • Li, C.1    Feng, W.2    Qiu, L.3    Xia, C.4    Su, X.5
  • 14
    • 84884190804 scopus 로고    scopus 로고
    • De novo assembly of the sea cucumber Apostichopus japonicus hemocytes transcriptome to identify miRNA targets associated with skin ulceration syndrome
    • Zhang P, Li C, Zhu L, Su X, Li Y, et al. (2013) De novo assembly of the sea cucumber Apostichopus japonicus hemocytes transcriptome to identify miRNA targets associated with skin ulceration syndrome. PLoS One 8(9):e73506.
    • (2013) PLoS One , vol.8 , Issue.9
    • Zhang, P.1    Li, C.2    Zhu, L.3    Su, X.4    Li, Y.5
  • 15
    • 77957220211 scopus 로고    scopus 로고
    • Two-dimensional gel electrophoresis in proteomics: Past, present and future
    • Rabilloud T, Chevallet M, Luche S, Lelong C (2010) Two-dimensional gel electrophoresis in proteomics: Past, present and future. Journal of Proteomics 73(11): 2064-2077.
    • (2010) Journal of Proteomics , vol.73 , Issue.11 , pp. 2064-2077
    • Rabilloud, T.1    Chevallet, M.2    Luche, S.3    Lelong, C.4
  • 18
    • 84873368065 scopus 로고    scopus 로고
    • Statistical inference from multiple iTRAQ experiments without using common reference standards
    • Herbrich SM, Cole RN, West KP Jr, Schulze K, Yager JD, et al. (2013) Statistical inference from multiple iTRAQ experiments without using common reference standards. Journal of Proteome Research 12(2): 594-604.
    • (2013) Journal of Proteome Research , vol.12 , Issue.2 , pp. 594-604
    • Herbrich, S.M.1    Cole, R.N.2    West Jr., K.P.3    Schulze, K.4    Yager, J.D.5
  • 19
    • 34848874473 scopus 로고    scopus 로고
    • Shotgun identification of the structural proteome of shrimp white spot syndrome virus and iTRAQ differentation of envelope and nucleocapsid subproteomes
    • DOI 10.1074/mcp.M600327-MCP200
    • Li Z, Lin Q, Chen J, Wu J, Lim TK, et al. (2007) Shotgun identification of the structural proteome of shrimp white spot syndrome virus and iTRAQ differentiation of envelope and nucleocapsid subproteomes. Molecular and Cell Proteomics. 6(9): 1609-1620. (Pubitemid 47506171)
    • (2007) Molecular and Cellular Proteomics , vol.6 , Issue.9 , pp. 1609-1620
    • Li, Z.1    Lin, Q.2    Chen, J.3    Wu, J.L.4    Lim, T.K.5    Loh, S.S.6    Tang, X.7    Hew, C.-L.8
  • 20
    • 84891161741 scopus 로고    scopus 로고
    • iTRAQ analysis of gill proteins from the zebrafish (Danio rerio) infected with Aeromonas hydrophila
    • Lü A, Hu X, Wang Y, Shen X, Li X, et al. (2014) iTRAQ analysis of gill proteins from the zebrafish (Danio rerio) infected with Aeromonas hydrophila. Fish and Shellfish Immunology 36(1): 229-239.
    • (2014) Fish and Shellfish Immunology , vol.36 , Issue.1 , pp. 229-239
    • Lü, A.1    Hu, X.2    Wang, Y.3    Shen, X.4    Li, X.5
  • 21
    • 84870577216 scopus 로고    scopus 로고
    • Quantitative proteomic strategies for the identification of microRNA targets
    • Li C, Xiong Q, Zhang J, Ge F, Bi L (2012) Quantitative proteomic strategies for the identification of microRNA targets. Expert Review of Proteomics 9(5): 549-559.
    • (2012) Expert Review of Proteomics , vol.9 , Issue.5 , pp. 549-559
    • Li, C.1    Xiong, Q.2    Zhang, J.3    Ge, F.4    Bi, L.5
  • 22
    • 84898770919 scopus 로고    scopus 로고
    • Identification of potential microRNA-target pairs associated with osteopetrosis by deep sequencing, iTRAQ proteomics and bioinformatics
    • doi: 10.1038/ejhg.2013.221
    • Ou M, Zhang X, Dai Y, Gao J, Zhu M, et al. (2014) Identification of potential microRNA-target pairs associated with osteopetrosis by deep sequencing, iTRAQ proteomics and bioinformatics. European Journal of Human Genetics doi: 10.1038/ejhg.2013.221.
    • (2014) European Journal of Human Genetics
    • Ou, M.1    Zhang, X.2    Dai, Y.3    Gao, J.4    Zhu, M.5
  • 23
    • 84890236258 scopus 로고    scopus 로고
    • Transcriptome sequencing of sea cucumber (Apostichopus japonicus) and the identification of gene-associated markers
    • Zhou Z, Dong Y, Sun H, Yang AF, Chen Z, et al. (2014) Transcriptome sequencing of sea cucumber (Apostichopus japonicus) and the identification of gene-associated markers. Molecular Ecology Resources14(1):127-138
    • (2014) Molecular Ecology Resources , vol.14 , Issue.1 , pp. 127-138
    • Zhou, Z.1    Dong, Y.2    Sun, H.3    Yang, A.F.4    Chen, Z.5
  • 24
    • 84887703018 scopus 로고    scopus 로고
    • Divergent metabolic responses of Apostichopus japonicus suffered from skin ulceration syndrome and pathogen challenge
    • Shao Y, Li C, Ou C, Zhang P, Lu Y, et al. (2013) Divergent metabolic responses of Apostichopus japonicus suffered from skin ulceration syndrome and pathogen challenge. Journal of Agricultural and Food Chemistry 61(45): 10766-10771.
    • (2013) Journal of Agricultural and Food Chemistry , vol.61 , Issue.45 , pp. 10766-10771
    • Shao, Y.1    Li, C.2    Ou, C.3    Zhang, P.4    Lu, Y.5
  • 25
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Analytical Biochemistry 72: 248-254.
    • (1976) Analytical Biochemistry , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 26
    • 34848889259 scopus 로고    scopus 로고
    • The paragon algorithm, a next generation search engine that uses sequence temperature values sequence temperature values and feature probabilities to identify peptides from tandem mass spectra
    • DOI 10.1074/mcp.T600050-MCP200
    • Shilov IV, Seymour SL, Patel AA, Loboda A, Tang WH, et al. (2007) The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra. Molecular and Cellular Proteomics 6(9): 1638-1655. (Pubitemid 47506173)
    • (2007) Molecular and Cellular Proteomics , vol.6 , Issue.9 , pp. 1638-1655
    • Shilov, I.V.1    Seymourt, S.L.2    Patel, A.A.3    Loboda, A.4    Tang, W.H.5    Keating, S.P.6    Hunter, C.L.7    Nuwaysir, L.M.8    Schaeffer, D.A.9
  • 27
    • 84885461567 scopus 로고    scopus 로고
    • High-throughput sequencing reveals differential expression of miRNAs in intestine from sea cucumber duringaestivation
    • 15
    • Chen M, Zhang X, Liu J, Storey KB (2013) High-throughput sequencing reveals differential expression of miRNAs in intestine from sea cucumber duringaestivation. PLoS One 15;8(10):e76120.
    • (2013) PLoS One , vol.8 , Issue.10
    • Chen, M.1    Zhang, X.2    Liu, J.3    Storey, K.B.4
  • 28
    • 84882755521 scopus 로고    scopus 로고
    • Identification and assessment of differentially expressed genes involved in growth regulation in Apostichopus japonicus
    • 20
    • Zhu L, Li C, Su X, Guo C, Wang Z, et al. (2013) Identification and assessment of differentially expressed genes involved in growth regulation in Apostichopus japonicus. Genet Mol Res 20;12(3):3028-3037.
    • (2013) Genet Mol Res , vol.12 , Issue.3 , pp. 3028-3037
    • Zhu, L.1    Li, C.2    Su, X.3    Guo, C.4    Wang, Z.5
  • 31
    • 84895072858 scopus 로고    scopus 로고
    • Ficolins and infectious diseases
    • Ren Y, Ding Q, Zhang X (2014) Ficolins and infectious diseases. Virological Sinica 29(1): 25-32.
    • (2014) Virological Sinica , vol.29 , Issue.1 , pp. 25-32
    • Ren, Y.1    Ding, Q.2    Zhang, X.3
  • 32
    • 84865200796 scopus 로고    scopus 로고
    • Src tyrosine kinase inhibits apoptosis through the Erk1/2- dependent degradation of the death accelerator Bik
    • Lopez J, Hesling C, Prudent J, Popgeorgiev N, Gadet R, et al. (2012) Src tyrosine kinase inhibits apoptosis through the Erk1/2- dependent degradation of the death accelerator Bik. Cell Death and Differentiation 19(9): 1459-1469.
    • (2012) Cell Death and Differentiation , vol.19 , Issue.9 , pp. 1459-1469
    • Lopez, J.1    Hesling, C.2    Prudent, J.3    Popgeorgiev, N.4    Gadet, R.5
  • 33
    • 79958048266 scopus 로고    scopus 로고
    • Quantitative subcellular proteome and secretome profiling of influenza A virus-infected human primary macrophages
    • Lietzén N, Ohman T, Rintahaka J, Julkunen I, Aittokallio T, et al. (2011) Quantitative subcellular proteome and secretome profiling of influenza A virus-infected human primary macrophages. PLoS Pathogens 7(5): e1001340.
    • (2011) PLoS Pathogens , vol.7 , Issue.5
    • Lietzén, N.1    Ohman, T.2    Rintahaka, J.3    Julkunen, I.4    Aittokallio, T.5
  • 34
    • 38449114688 scopus 로고    scopus 로고
    • Involvement of vitronectin in lipopolysaccaride-induced acute lung injury
    • Tsuruta Y, Park YJ, Siegal GP, Liu G, Abraham E (2007) Involvement of vitronectin in lipopolysaccaride-induced acute lung injury. Journal of Immunology 179(10): 7079-7086
    • (2007) Journal of Immunology , vol.179 , Issue.10 , pp. 7079-7086
    • Tsuruta, Y.1    Park, Y.J.2    Siegal, G.P.3    Liu, G.4    Abraham, E.5
  • 36
    • 2442606429 scopus 로고    scopus 로고
    • Vinculin modulation of paxillin-FAK interactions regulates ERK to control survival and motility
    • DOI 10.1083/jcb.200308011
    • Subauste MC, Pertz O, Adamson ED, Turner CE, Junger S (2004) Vinculin modulation of paxillin-FAK interactions regulates ERK to control survival and motility. The Journal of Cell Biology 165(3): 371-381. (Pubitemid 38649912)
    • (2004) Journal of Cell Biology , vol.165 , Issue.3 , pp. 371-381
    • Subauste, M.C.1    Pertz, O.2    Adamson, E.D.3    Turner, C.E.4    Junger, S.5    Hahn, K.M.6
  • 37
    • 38949198823 scopus 로고    scopus 로고
    • Down-regulation of vinculin upon MK886-induced apoptosis in LN18 glioblastoma cells
    • Magro AM, Magro AD, Cunningham C, Miller MR (2007) Down-regulation of vinculin upon MK886-induced apoptosis in LN18 glioblastoma cells. Neoplasma 54(6): 517-526.
    • (2007) Neoplasma , vol.54 , Issue.6 , pp. 517-526
    • Magro, A.M.1    Magro, A.D.2    Cunningham, C.3    Miller, M.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.