Complete genome sequence of Gluconacetobacter xylinus E25 strain-Valuable and effective producer of bacterial nanocellulose

Journal of Biotechnology

Volumn 176, Issue 1, 2014, Pages 18-19

  Kubiak, Katarzyna ^a   Kurzawa, Marta ^a   Jedrzejczak Krzepkowska, Marzena ^a   Ludwicka, Karolina ^a   Krawczyk, Mariusz ^b,c   Migdalski, Andrzej ^b   Kacprzak, Magdalena M ^b   Loska, Damian ^b,c   Krystynowicz, Alina ^a   Bielecki, Stanisław ^a  

^a LODZ UNIVERSITY OF TECHNOLOGY   (Poland)

^b Polish Japanese Institute of Information Technology ^*

^c POLISH JAPANESE INSTITUTE OF INFORMATION TECHNOLOGY   (Poland)

Author keywords

Bacterial nanocellulose; Cellulose synthase operon; Gluconacetobacter xylinus genome; Next generation sequencing (NGS)

Indexed keywords

CELLULOSE SYNTHASE; GENOME STRUCTURES; GLUCONACETOBACTER XYLINUS; MOLECULAR MECHANISM; NANO-CELLULOSE; NEXT-GENERATION SEQUENCING; SEQUENCE ANALYSIS; WHOLE GENOME SEQUENCING;

BIOINFORMATICS; BIOLOGICAL MATERIALS; GENES; GENETIC ENGINEERING; PLANTS (BOTANY);

CELLULOSE;

BACTERIAL NANOCELLULOSE; BIOMATERIAL; CELLULOSE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL CHROMOSOME; BACTERIAL GENOME; BACTERIAL STRAIN; BIOINFORMATICS; GENE SEQUENCE; GENE STRUCTURE; GLUCONACETOBACTER XYLINUS; MOLECULAR MECHANICS; NONHUMAN; PLASMID; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

BACTERIAL NANOCELLULOSE; CELLULOSE SYNTHASE OPERON; GLUCONACETOBACTER XYLINUS GENOME; NEXT GENERATION SEQUENCING (NGS);

ACETIC ACID; CELLULOSE; CHROMOSOMES, BACTERIAL; GENOME, BACTERIAL; GLUCONACETOBACTER XYLINUS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; MOLECULAR SEQUENCE DATA; PLASMIDS; SEQUENCE ANALYSIS, DNA;

EID: 84903362815     PISSN: 01681656     EISSN: 18734863     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2014.02.006     Document Type: Article

References (21)

1. Andres J., Arsène-Ploetze F., Barbe V., Brochier-Armanet C., Cleiss-Arnold J., Coppée J.Y., Dillies M.A., Geist L., Joublin A., Koechler S., Lassalle F., Marchal M., Médigue C., Muller D., Nesme X., Plewniak F., Proux C., Ramírez-Bahena M.H., Schenowitz C., Sismeiro O. Vallene life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium Rhizobium sp. NT-26. Genome Biol. Evol. 2013, 5:934-953. 10.1093/gbe/evt061.
2. Brown A.J. An acetic ferment which forms cellulose. J. Chem. Soc. 1886, 49:432-439.
3. Chevreux B., Wetter T., Suhai S. Genome sequence assembly using trace signals and additional sequence information. Computer Science and Biology: Proceedings of the German Conference on Bioinformatics (GCB), vol. 99 1999, 45-56.
4. Czaja W., Krystynowicz A., Bielecki S., Brown R.M. Microbial cellulose - the natural power to heal wounds. Biomaterials 2006, 27:145-151.
5. 2-fixing endosymbiont Sinorhizobium meliloti. Proc. Natl. Acad. Sci. U.S.A. 2001, 98:9889-9894.
6. Gama M., Gatenholm P., Klemm D. Bacterial NanoCellulose: A Sophisticated Multifunctional Material 2012, CRC Press, Boca Raton, FL.
7. Hu S.Q., Gao Y.G., Tajima K., Sunagawa N., Zhou Y., Kawano S., Fujiwara T., Yoda T., Shimura D., Satoh Y., Munekata M., Tanaka I., Yao M. Structure of bacterial cellulose synthase subunit D octamer with four inner passageways. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:17957-17961. 10.1073/pnas.1000601107.
8. Hyatt D., Chen G.L., Locascio P.F., Land M.L., Larimer F.W., Hauser L.J. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 2010, 11:119. 10.1186/1471-2105-11-119.
9. Iyer P.R., Geib S.M., Catchmark J., Kao T., Tien M. Genome sequence of a cellulose-producing bacterium, Gluconacetobacter hansenii ATCC 23769. J. Bacteriol. 2010, 192:4256-4257. 10.1128/JB.00588-10.
10. Koo H.M., Song S.H., Pyun Y.R., Kim Y.S. Evidence that a beta-1,4-endoglucanase secreted by Acetobacter xylinum plays an essential role for the formation of cellulose fiber. Biosci. Biotechnol. Biochem. 1998, 62:2257-2259.
11. Kowalska-Ludwicka K., Cala J., Grobelski B., Sygut D., Jesionek-Kupnicka D., Kolodziejczyk M., Bielecki S., Pasieka Z. Modified bacterial cellulose tubes for regeneration of damaged peripheral nerves. Arch. Med. Sci. 2013, 9:527-534. 10.5114/aoms.2013.33433.
12. Krystynowicz A., Czaja W., Wiktorowska-Jezierska A., Gonçalves-Miśkiewicz M., Turkiewicz M., Bielecki S. Factors affecting the yield and properties of bacterial cellulose. J. Ind. Microbiol. Biotechnol. 2002, 29:189-195.
13. Mazur A., Stasiak G., Wielbo J., Koper P., Kubik-Komar A., Skorupska A. Phenotype profiling of Rhizobium leguminosarum bv. trifolii clover nodule isolates reveal their both versatile and specialized metabolic capabilities. Arch. Microbiol. 2013, 195:255-267. 10.1007/s00203-013-0874-x.
14. Ogino H., Azuma Y., Hosoyama A., Nakazawa H., Matsutani M., Hasegawa A., Otsuyama K., Matsushita K., Fujita N., Shirai M. Complete genome sequence of NBRC 3288, a unique cellulose-nonproducing strain of Gluconacetobacter xylinus isolated from vinegar. J. Bacteriol. 2011, 193:6997-6998. 10.1128/JB.06158-11.
15. Saxena I.M., Kudlicka K., Okuda K., Brown R.M. Characterization of genes in the cellulose-synthesizing operon (acs operon) of Acetobacter xylinum: implications for cellulose crystallization. J. Bacteriol. 1994, 176:5735-5752.
16. Shelud'ko A.V., Varshalomidze O.E., Petrova L.P., Katsy E.I. Effect of genomic rearrangement on heavy metal tolerance in the plant-growth-promoting rhizobacterium Azospirillum brasilense Sp245. Folia Microbiol. (Praha) 2012, 57:5-10. 10.1007/s12223-011-0074-5.
17. Staden R. The Staden sequence analysis package. Mol. Biotechnol. 1996, 5:233-241.
18. Stewart A.C., Osborne B., Read T.D. DIYA: a bacterial annotation pipeline for any genomics lab. Bioinformatics 2009, 25:962-963. 10.1093/bioinformatics/btp097.
19. Weidner S., Baumgarth B., Göttfert M., Jaenicke S., Pühler A., Schneiker-Bekel S., Serrania J., Szczepanowski R., Becker A. Genome sequence of Sinorhizobium meliloti Rm41. Genome Announc. 2013, 1. e00013-12. 10.1128/genomeA.00013-12.
20. Yasutake Y., Kawano S., Tajima K., Min Y., Satoh Y., Munekata M., Tanaka I. Structural characterization of the Acetobacter xylinum endo-β-1,4-glucanase CMCax required for cellulose biosynthesis. Proteins 2006, 64:1069-1077.
21. Yu C., Zavaljevski N., Desai V., Johnson S., Stevens F.J., Reifman J. The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation. BMC Bioinformatics 2008, 9:52. 10.1186/1471-2105-9-52.