-
1
-
-
4644242349
-
RNA silencing in plants
-
Baulcombe D. RNA silencing in plants. Nature 2004, 431:356-363.
-
(2004)
Nature
, vol.431
, pp. 356-363
-
-
Baulcombe, D.1
-
2
-
-
48549084408
-
RNA silencing in plants: yesterday, today, and tomorrow
-
Eamens A, Wang MB, Smith NA, Waterhouse PM. RNA silencing in plants: yesterday, today, and tomorrow. Plant Physiol 2008, 147(2):456-468.
-
(2008)
Plant Physiol
, vol.147
, Issue.2
, pp. 456-468
-
-
Eamens, A.1
Wang, M.B.2
Smith, N.A.3
Waterhouse, P.M.4
-
3
-
-
0034877670
-
RNA interference: listening to the sound of silence
-
Zamore PD. RNA interference: listening to the sound of silence. Nat Struct Biol 2001, 8:746-750.
-
(2001)
Nat Struct Biol
, vol.8
, pp. 746-750
-
-
Zamore, P.D.1
-
4
-
-
13244278197
-
SiRNA and miRNA: an insight into RISCs
-
Tang G. siRNA and miRNA: an insight into RISCs. Trends Biochem Sci 2005, 30(2):106-114.
-
(2005)
Trends Biochem Sci
, vol.30
, Issue.2
, pp. 106-114
-
-
Tang, G.1
-
5
-
-
84894472195
-
Evolutionary history of plant microRNAs
-
Taylor RS, Tarver JE, Hiscock SJ, Donoghue PC. Evolutionary history of plant microRNAs. Trends Plant Sci 2014, 19(3):175-182.
-
(2014)
Trends Plant Sci
, vol.19
, Issue.3
, pp. 175-182
-
-
Taylor, R.S.1
Tarver, J.E.2
Hiscock, S.J.3
Donoghue, P.C.4
-
6
-
-
84865761379
-
RNA silencing and plant viral diseases
-
Wang MB, Masuta C, Smith NA, Shimura H. RNA silencing and plant viral diseases. Mol Plant Microbe Interact 2012, 25(10):1275-1285.
-
(2012)
Mol Plant Microbe Interact
, vol.25
, Issue.10
, pp. 1275-1285
-
-
Wang, M.B.1
Masuta, C.2
Smith, N.A.3
Shimura, H.4
-
7
-
-
79960716754
-
Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing
-
Haag JR, Pikaard CS. Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing. Nat Rev Mol Cell Biol 2011, 12:483-492.
-
(2011)
Nat Rev Mol Cell Biol
, vol.12
, pp. 483-492
-
-
Haag, J.R.1
Pikaard, C.S.2
-
8
-
-
65249148019
-
RNA-mediated chromatin-based silencing in plants
-
Matzke M, Kanno T, Daxinger L, Huettel B, Matzke AJ. RNA-mediated chromatin-based silencing in plants. Curr Opin Cell Biol 2009, 21(3):367-376.
-
(2009)
Curr Opin Cell Biol
, vol.21
, Issue.3
, pp. 367-376
-
-
Matzke, M.1
Kanno, T.2
Daxinger, L.3
Huettel, B.4
Matzke, A.J.5
-
10
-
-
84876976472
-
Widespread, abundant, and diverse TE-associated siRNAs in developing wheat grain
-
Sun F, Guo W, Du J, Ni Z, Sun Q, Yao Y. Widespread, abundant, and diverse TE-associated siRNAs in developing wheat grain. Gene 2013, 522(1):1-7.
-
(2013)
Gene
, vol.522
, Issue.1
, pp. 1-7
-
-
Sun, F.1
Guo, W.2
Du, J.3
Ni, Z.4
Sun, Q.5
Yao, Y.6
-
11
-
-
33644850032
-
Nomenclature and functions of RNA-directed RNA polymerases
-
Wassenegger M, Krczal G. Nomenclature and functions of RNA-directed RNA polymerases. Trends Plant Sci 2006, 11(3):142-151.
-
(2006)
Trends Plant Sci
, vol.11
, Issue.3
, pp. 142-151
-
-
Wassenegger, M.1
Krczal, G.2
-
12
-
-
84864441023
-
Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development
-
Song X, Wang D, Ma L, Chen Z, Li P, Cui X, Liu C, Cao S, Chu C, Tao Y, Cao X. Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development. Plant J 2012, 71(3):378-389.
-
(2012)
Plant J
, vol.71
, Issue.3
, pp. 378-389
-
-
Song, X.1
Wang, D.2
Ma, L.3
Chen, Z.4
Li, P.5
Cui, X.6
Liu, C.7
Cao, S.8
Chu, C.9
Tao, Y.10
Cao, X.11
-
13
-
-
4944225347
-
Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs
-
Vazquez F, Vaucheret H, Rajagopalan R, Lepers C, Gasciolli V, Mallory AC, Hilbert JL, Bartel DP, Crete P. Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. Mol Cell 2004, 16(1):69-79.
-
(2004)
Mol Cell
, vol.16
, Issue.1
, pp. 69-79
-
-
Vazquez, F.1
Vaucheret, H.2
Rajagopalan, R.3
Lepers, C.4
Gasciolli, V.5
Mallory, A.C.6
Hilbert, J.L.7
Bartel, D.P.8
Crete, P.9
-
14
-
-
54549105515
-
The CaMV transactivator/viroplasmin interferes with RDR6-dependent trans-acting and secondary siRNA pathways in Arabidopsis
-
Shivaprasad PV, Rajeswaran R, Blevins T, Schoelz J, Meins F, Hohn T, Pooggin MM. The CaMV transactivator/viroplasmin interferes with RDR6-dependent trans-acting and secondary siRNA pathways in Arabidopsis. Nucleic Acids Res 2008, 36(18):5896-5909.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.18
, pp. 5896-5909
-
-
Shivaprasad, P.V.1
Rajeswaran, R.2
Blevins, T.3
Schoelz, J.4
Meins, F.5
Hohn, T.6
Pooggin, M.M.7
-
15
-
-
63549109144
-
Compromised virus-induced gene silencing in RDR6-deficient plants
-
Vaistij FE, Jones L. Compromised virus-induced gene silencing in RDR6-deficient plants. Plant Physiol 2009, 149(3):1399-1407.
-
(2009)
Plant Physiol
, vol.149
, Issue.3
, pp. 1399-1407
-
-
Vaistij, F.E.1
Jones, L.2
-
16
-
-
84890805945
-
Long noncoding RNAs responsive to Fusarium oxysporum infection in Arabidopsis thaliana
-
Zhu QH, Stephen S, Taylor J, Helliwell CA, Wang MB. Long noncoding RNAs responsive to Fusarium oxysporum infection in Arabidopsis thaliana. New Phytol 2014, 201(2):574-584.
-
(2014)
New Phytol
, vol.201
, Issue.2
, pp. 574-584
-
-
Zhu, Q.H.1
Stephen, S.2
Taylor, J.3
Helliwell, C.A.4
Wang, M.B.5
-
17
-
-
1842534581
-
RNA silencing: a conserved antiviral immunity of plants and animals
-
Ding SW, Li H, Lu R, Li F, Li WX. RNA silencing: a conserved antiviral immunity of plants and animals. Virus Res 2004, 102(1):109-115.
-
(2004)
Virus Res
, vol.102
, Issue.1
, pp. 109-115
-
-
Ding, S.W.1
Li, H.2
Lu, R.3
Li, F.4
Li, W.X.5
-
18
-
-
84884799895
-
The role of hydrogen peroxide and nitric oxide in the induction of plant-encoded RNA-dependent RNA polymerase 1 in the basal defense against Tobacco mosaic virus
-
Liao YW, Sun ZH, Zhou YH, Shi K, Li X, Zhang GQ, Xia XJ, Chen ZX, Yu JQ. The role of hydrogen peroxide and nitric oxide in the induction of plant-encoded RNA-dependent RNA polymerase 1 in the basal defense against Tobacco mosaic virus. PLoS One 2013, 8(9):e76090.
-
(2013)
PLoS One
, vol.8
, Issue.9
-
-
Liao, Y.W.1
Sun, Z.H.2
Zhou, Y.H.3
Shi, K.4
Li, X.5
Zhang, G.Q.6
Xia, X.J.7
Chen, Z.X.8
Yu, J.Q.9
-
19
-
-
70249121986
-
The influence of RNA-dependent RNA polymerase 1 on potato virus Y infection and on other antiviral response genes
-
Rakhshandehroo F, Takeshita M, Squires J, Palukaitis P. The influence of RNA-dependent RNA polymerase 1 on potato virus Y infection and on other antiviral response genes. Mol Plant Microbe Interact 2009, 22(10):1312-1318.
-
(2009)
Mol Plant Microbe Interact
, vol.22
, Issue.10
, pp. 1312-1318
-
-
Rakhshandehroo, F.1
Takeshita, M.2
Squires, J.3
Palukaitis, P.4
-
20
-
-
84872614860
-
Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome
-
Stroud H, Greenberg MV, Feng S, Bernatavichute YV, Jacobsen SE. Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. Cell 2013, 152(1-2):352-364.
-
(2013)
Cell
, vol.152
, Issue.1-2
, pp. 352-364
-
-
Stroud, H.1
Greenberg, M.V.2
Feng, S.3
Bernatavichute, Y.V.4
Jacobsen, S.E.5
-
21
-
-
84867399392
-
NERD, a plant-specific GW protein, defines an additional RNAi-dependent chromatin-based pathway in Arabidopsis
-
Pontier D, Picart C, Roudier F, Garcia D, Lahmy S, Azevedo J, Alart E, Laudie M, Karlowski WM, Cooke R, Colot V, Voinnet O, Lagrange T. NERD, a plant-specific GW protein, defines an additional RNAi-dependent chromatin-based pathway in Arabidopsis. Mol Cell 2012, 48(1):121-132.
-
(2012)
Mol Cell
, vol.48
, Issue.1
, pp. 121-132
-
-
Pontier, D.1
Picart, C.2
Roudier, F.3
Garcia, D.4
Lahmy, S.5
Azevedo, J.6
Alart, E.7
Laudie, M.8
Karlowski, W.M.9
Cooke, R.10
Colot, V.11
Voinnet, O.12
Lagrange, T.13
-
22
-
-
84873861006
-
Both OsRecQ1 and OsRDR1 are required for the production of small RNA in response to DNA-damage in rice
-
Chen H, Kobayashi K, Miyao A, Hirochika H, Yamaoka N, Nishiguchi M. Both OsRecQ1 and OsRDR1 are required for the production of small RNA in response to DNA-damage in rice. PLoS One 2013, 8(1):e55252.
-
(2013)
PLoS One
, vol.8
, Issue.1
-
-
Chen, H.1
Kobayashi, K.2
Miyao, A.3
Hirochika, H.4
Yamaoka, N.5
Nishiguchi, M.6
-
23
-
-
77952089992
-
Analysis of rice RNA-dependent RNA polymerase 1 (OsRDR1) in virus-mediated RNA silencing after particle bombardment
-
Chen H, Tamai A, Mori M, Ugaki M, Tanaka Y, Samadder P, Miyao A, Hirochika H, Yamaoka N, Nishiguchi M. Analysis of rice RNA-dependent RNA polymerase 1 (OsRDR1) in virus-mediated RNA silencing after particle bombardment. J Gen Plant Pahtol 2010, 76(3):152-160.
-
(2010)
J Gen Plant Pahtol
, vol.76
, Issue.3
, pp. 152-160
-
-
Chen, H.1
Tamai, A.2
Mori, M.3
Ugaki, M.4
Tanaka, Y.5
Samadder, P.6
Miyao, A.7
Hirochika, H.8
Yamaoka, N.9
Nishiguchi, M.10
-
24
-
-
77953214787
-
RNA-dependent RNA polymerase 1 from Nicotiana tabacum suppresses RNA silencing and enhances viral infection in Nicotiana benthamiana
-
Ying XB, Dong L, Zhu H, Duan CG, Du QS, Lv DQ, Fang YY, Garcia JA, Fang RX, Guo HS. RNA-dependent RNA polymerase 1 from Nicotiana tabacum suppresses RNA silencing and enhances viral infection in Nicotiana benthamiana. Plant Cell 2010, 22(4):1358-1372.
-
(2010)
Plant Cell
, vol.22
, Issue.4
, pp. 1358-1372
-
-
Ying, X.B.1
Dong, L.2
Zhu, H.3
Duan, C.G.4
Du, Q.S.5
Lv, D.Q.6
Fang, Y.Y.7
Garcia, J.A.8
Fang, R.X.9
Guo, H.S.10
-
25
-
-
0029824259
-
Retrotransposons of rice involved in mutations induced by tissue culture
-
Hirochika H, Sugimoto K, Otsuki Y, Tsugawa H, Kanda M. Retrotransposons of rice involved in mutations induced by tissue culture. Proc Natl Acad Sci U S A 1996, 93(15):7783-7788.
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, Issue.15
, pp. 7783-7788
-
-
Hirochika, H.1
Sugimoto, K.2
Otsuki, Y.3
Tsugawa, H.4
Kanda, M.5
-
26
-
-
43949109593
-
Structural and genetic requirements for the biogenesis of tobacco rattle virus-derived small interfering RNAs
-
Donaire L, Barajas D, Martinez-Garcia B, Martinez-Priego L, Pagan I, Llave C. Structural and genetic requirements for the biogenesis of tobacco rattle virus-derived small interfering RNAs. J Virol 2008, 82:5167-5177.
-
(2008)
J Virol
, vol.82
, pp. 5167-5177
-
-
Donaire, L.1
Barajas, D.2
Martinez-Garcia, B.3
Martinez-Priego, L.4
Pagan, I.5
Llave, C.6
-
27
-
-
76249093088
-
RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana
-
Wang XB, Wu Q, Ito T, Cillo F, Li WX, Chen X, Yu JL, Ding SW. RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana. Proc Natl Acad Sci U S A 2010, 107:484-489.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 484-489
-
-
Wang, X.B.1
Wu, Q.2
Ito, T.3
Cillo, F.4
Li, W.X.5
Chen, X.6
Yu, J.L.7
Ding, S.W.8
-
28
-
-
42149157716
-
Identification of novel and candidate miRNAs in rice by high throughput sequencing
-
Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK. Identification of novel and candidate miRNAs in rice by high throughput sequencing. BMC Plant Biol 2008, 8:25.
-
(2008)
BMC Plant Biol
, vol.8
, pp. 25
-
-
Sunkar, R.1
Zhou, X.2
Zheng, Y.3
Zhang, W.4
Zhu, J.K.5
-
29
-
-
50649110065
-
A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
-
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C. A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains. Genome Res 2008, 18(9):1456-1465.
-
(2008)
Genome Res
, vol.18
, Issue.9
, pp. 1456-1465
-
-
Zhu, Q.H.1
Spriggs, A.2
Matthew, L.3
Fan, L.4
Kennedy, G.5
Gubler, F.6
Helliwell, C.7
-
30
-
-
42449150879
-
Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
-
Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meryers B, Green P. Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs). Proc Natl Acad Sci U S A 2008, 105(12):4951-4956.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, Issue.12
, pp. 4951-4956
-
-
Lu, C.1
Jeong, D.H.2
Kulkarni, K.3
Pillay, M.4
Nobuta, K.5
German, R.6
Thatcher, S.R.7
Maher, C.8
Zhang, L.9
Ware, D.10
Liu, B.11
Cao, X.12
Meryers, B.13
Green, P.14
-
31
-
-
62349111195
-
Epigenetic regulation of stress responses in plants
-
Chinnusamy V, Zhu JK. Epigenetic regulation of stress responses in plants. Curr Opin Plant Biol 2009, 12(2):133-139.
-
(2009)
Curr Opin Plant Biol
, vol.12
, Issue.2
, pp. 133-139
-
-
Chinnusamy, V.1
Zhu, J.K.2
-
32
-
-
84862991957
-
Salt stress induced variation in DNA methylation pattern and its influence on gene expression in contrasting rice genotypes
-
Karan R, DeLeon T, Biradar H, Subudhi PK. Salt stress induced variation in DNA methylation pattern and its influence on gene expression in contrasting rice genotypes. PLoS One 2012, 7(6):e40203.
-
(2012)
PLoS One
, vol.7
, Issue.6
-
-
Karan, R.1
DeLeon, T.2
Biradar, H.3
Subudhi, P.K.4
-
33
-
-
84861056564
-
Transition of chromatin status during the process of recovery from drought stress in Arabidopsis thaliana
-
Kim JM, To TK, Ishida J, Matsui A, Kimura H, Seki M. Transition of chromatin status during the process of recovery from drought stress in Arabidopsis thaliana. Plant Cell Physiol 2012, 53(5):847-856.
-
(2012)
Plant Cell Physiol
, vol.53
, Issue.5
, pp. 847-856
-
-
Kim, J.M.1
To, T.K.2
Ishida, J.3
Matsui, A.4
Kimura, H.5
Seki, M.6
-
34
-
-
79960293541
-
Heritable alteration in DNA methylation induced by nitrogen-deficiency stress accompanies enhanced tolerance by progenies to the stress in rice (Oryza sativa L.)
-
Kou HP, Li Y, Song XX, Ou XF, Xing SC, Ma J, Von Wettstein D, Liu B. Heritable alteration in DNA methylation induced by nitrogen-deficiency stress accompanies enhanced tolerance by progenies to the stress in rice (Oryza sativa L.). J Plant Physiol 2011, 168(14):1685-1693.
-
(2011)
J Plant Physiol
, vol.168
, Issue.14
, pp. 1685-1693
-
-
Kou, H.P.1
Li, Y.2
Song, X.X.3
Ou, X.F.4
Xing, S.C.5
Ma, J.6
Von Wettstein, D.7
Liu, B.8
-
35
-
-
77955498202
-
Diverse set of microRNAs are responsive to powdery mildew infection and heat stress in wheat (Triticum aestivum L.)
-
Xin M, Wang Y, Yao Y, Xie C, Peng H, Ni Z, Sun Q. Diverse set of microRNAs are responsive to powdery mildew infection and heat stress in wheat (Triticum aestivum L.). BMC Plant Biol 2010, 10:123.
-
(2010)
BMC Plant Biol
, vol.10
, pp. 123
-
-
Xin, M.1
Wang, Y.2
Yao, Y.3
Xie, C.4
Peng, H.5
Ni, Z.6
Sun, Q.7
-
36
-
-
84866297414
-
Transgenerational inheritance of modified DNA methylation patterns and enhanced tolerance induced by heavy metal stress in rice (Oryza sativa L.)
-
Ou X, Zhang Y, Xu C, Lin X, Zang Q, Zhuang T, Jiang L, von Wettstein D, Liu B. Transgenerational inheritance of modified DNA methylation patterns and enhanced tolerance induced by heavy metal stress in rice (Oryza sativa L.). PLoS One 2012, 7:e41143.
-
(2012)
PLoS One
, vol.7
-
-
Ou, X.1
Zhang, Y.2
Xu, C.3
Lin, X.4
Zang, Q.5
Zhuang, T.6
Jiang, L.7
von Wettstein, D.8
Liu, B.9
-
37
-
-
84857122167
-
Histone variants and chromatin assembly in plant abiotic stress responses
-
Zhu Y, Dong A, Shen WH. Histone variants and chromatin assembly in plant abiotic stress responses. Biochim Biophys Acta 2012, 1819(3-4):343-348.
-
(2012)
Biochim Biophys Acta
, vol.1819
, Issue.3-4
, pp. 343-348
-
-
Zhu, Y.1
Dong, A.2
Shen, W.H.3
-
38
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116(2):281-297.
-
(2004)
Cell
, vol.116
, Issue.2
, pp. 281-297
-
-
Bartel, D.P.1
-
39
-
-
11244329008
-
The population genetic theory of hidden variation and genetic robustness
-
Hermisson J, Wagner GP. The population genetic theory of hidden variation and genetic robustness. Genetics 2004, 168(4):2271-2284.
-
(2004)
Genetics
, vol.168
, Issue.4
, pp. 2271-2284
-
-
Hermisson, J.1
Wagner, G.P.2
-
40
-
-
77957333293
-
Transpositional reactivation of the Dart transposon family in rice lines derived from introgressive hybridization with Zizania latifolia
-
190.41
-
Wang N, Wang H, Zhang D, Wu Y, Ou X, Liu S, Dong Z, Liu B. Transpositional reactivation of the Dart transposon family in rice lines derived from introgressive hybridization with Zizania latifolia. BMC Plant Biol 2010, 10:190.41.
-
(2010)
BMC Plant Biol
, vol.10
-
-
Wang, N.1
Wang, H.2
Zhang, D.3
Wu, Y.4
Ou, X.5
Liu, S.6
Dong, Z.7
Liu, B.8
-
41
-
-
29144470346
-
Real-time quantification of microRNAs by stem-loop RT-PCR
-
Chen C, Ridzon DA, Broomer AJ, Zhou Z, Lee DH, Nguyen JT, Barbisin M, Xu NL, Mahuvakar VR, Andersen MR, Lao K, Livak K, Guegler K. Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res 2005, 33(20):e179.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.20
-
-
Chen, C.1
Ridzon, D.A.2
Broomer, A.J.3
Zhou, Z.4
Lee, D.H.5
Nguyen, J.T.6
Barbisin, M.7
Xu, N.L.8
Mahuvakar, V.R.9
Andersen, M.R.10
Lao, K.11
Livak, K.12
Guegler, K.13
-
42
-
-
77953625037
-
High-performance quantification of mature microRNAs by real-time RT-PCR using deoxyuridine-incorporated oligonucleotides and hemi-nested primers
-
Wan G, Lim QE, Too HP. High-performance quantification of mature microRNAs by real-time RT-PCR using deoxyuridine-incorporated oligonucleotides and hemi-nested primers. RNA 2010, 16(7):1436-1445.
-
(2010)
RNA
, vol.16
, Issue.7
, pp. 1436-1445
-
-
Wan, G.1
Lim, Q.E.2
Too, H.P.3
-
43
-
-
68349154098
-
Tissue culture-induced transpositional activity of mPing is correlated with cytosine methylation in rice
-
Ngezahayo F, Xu C, Wang H, Jiang L, Pang J, Liu B. Tissue culture-induced transpositional activity of mPing is correlated with cytosine methylation in rice. BMC Plant Biol 2009, 9:91.
-
(2009)
BMC Plant Biol
, vol.9
, pp. 91
-
-
Ngezahayo, F.1
Xu, C.2
Wang, H.3
Jiang, L.4
Pang, J.5
Liu, B.6
|