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Volumn 9, Issue 6, 2014, Pages

Optimized cryopreservation of mixed microbial communities for conserved functionality and diversity

Author keywords

[No Author keywords available]

Indexed keywords

CRYOPROTECTIVE AGENT; DIMETHYL SULFOXIDE; PROBIOTIC AGENT; RNA 16S; TREHALOSE;

EID: 84903281208     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0099517     Document Type: Article
Times cited : (67)

References (74)
  • 1
    • 34249952423 scopus 로고    scopus 로고
    • Mixed culture biotechnology for bioenergy production
    • DOI 10.1016/j.copbio.2007.05.001, PII S0958166907000572, Energy biotechnology / Environmental biotechnology
    • Kleerebezem R, van Loosdrecht MCM (2007) Mixed culture biotechnology for bioenergy production. Curr Opin Biotech 18: 207-212. (Pubitemid 46880287)
    • (2007) Current Opinion in Biotechnology , vol.18 , Issue.3 , pp. 207-212
    • Kleerebezem, R.1    Van Loosdrecht, M.C.2
  • 2
    • 79954628781 scopus 로고    scopus 로고
    • A sustainable, carbon neutral methane oxidation by a partnership of methane oxidizing communities and microalgae
    • doi:10.1016/j.watres.2011.03.005
    • van der Ha D, Bundervoet B, Verstraete W, Boon N (2011) A sustainable, carbon neutral methane oxidation by a partnership of methane oxidizing communities and microalgae. Water Res 45: 2845-2854. doi:10.1016/j.watres.2011. 03.005.
    • (2011) Water Res , vol.45 , pp. 2845-2854
    • Van Der Ha, D.1    Bundervoet, B.2    Verstraete, W.3    Boon, N.4
  • 3
    • 49049105130 scopus 로고    scopus 로고
    • Engineering microbial consortia: A new frontier in synthetic biology
    • doi:10.1016/j.tibtech.2008.05.004
    • Brenner K, You LC, Arnold FH (2008) Engineering microbial consortia: a new frontier in synthetic biology. Trends Biotechnol 26: 483-489. doi:10.1016/j.tibtech.2008.05.004.
    • (2008) Trends Biotechnol , vol.26 , pp. 483-489
    • Brenner, K.1    You, L.C.2    Arnold, F.H.3
  • 4
    • 68449086974 scopus 로고    scopus 로고
    • The Intestinal Environment in Health and Disease - Recent Insights on the Potential of Intestinal Bacteria to Influence Human Health
    • Possemiers S, Grootaert C, Vermeiren J, Gross G, Marzorati M, et al. (2009) The Intestinal Environment in Health and Disease - Recent Insights on the Potential of Intestinal Bacteria to Influence Human Health. Curr Pharm Design 15: 2051-2065.
    • (2009) Curr Pharm Design , vol.15 , pp. 2051-2065
    • Possemiers, S.1    Grootaert, C.2    Vermeiren, J.3    Gross, G.4    Marzorati, M.5
  • 5
    • 83655197770 scopus 로고    scopus 로고
    • Incorporating a mucosal environment in a dynamic gut model results in a more representative colonization by lactobacilli
    • Van den Abbeele P, Roos S, Eeckhaut V, MacKenzie DA, Derde M, et al. (2012) Incorporating a mucosal environment in a dynamic gut model results in a more representative colonization by lactobacilli. Microb Biotechnol 5: 106-115.
    • (2012) Microb Biotechnol , vol.5 , pp. 106-115
    • Van Den Abbeele, P.1    Roos, S.2    Eeckhaut, V.3    MacKenzie, D.A.4    Derde, M.5
  • 6
    • 84879013594 scopus 로고    scopus 로고
    • Prebiotics, faecal transplants and microbial network units to stimulate biodiversity of the human gut microbiome
    • Van den Abbeele P, Verstraete W, El Aidy S, Geirnaert A, Van de Wiele T (2013) Prebiotics, faecal transplants and microbial network units to stimulate biodiversity of the human gut microbiome. Microb Biotechnol 6: 335-340.
    • (2013) Microb Biotechnol , vol.6 , pp. 335-340
    • Van Den Abbeele, P.1    Verstraete, W.2    El Aidy, S.3    Geirnaert, A.4    Van De Wiele, T.5
  • 7
    • 79954939586 scopus 로고    scopus 로고
    • Microbial Resource Management revisited: Successful parameters and new concepts
    • doi:10.1007/s00253-011-3223-5
    • Read S, Marzorati M, Guimaraes BCM, Boon N (2011) Microbial Resource Management revisited: successful parameters and new concepts. Appl Microbiol Biot 90: 861-871. doi:10.1007/s00253-011-3223-5.
    • (2011) Appl Microbiol Biot , vol.90 , pp. 861-871
    • Read, S.1    Marzorati, M.2    Guimaraes, B.C.M.3    Boon, N.4
  • 8
    • 78751627523 scopus 로고    scopus 로고
    • Waste to bioproduct conversion with undefined mixed cultures: The carboxylate platform
    • Agler MT, Wrenn BA, Zinder SH, Angenent LT (2011) Waste to bioproduct conversion with undefined mixed cultures: the carboxylate platform. Trends Biotechnol 29: 70-78.
    • (2011) Trends Biotechnol , vol.29 , pp. 70-78
    • Agler, M.T.1    Wrenn, B.A.2    Zinder, S.H.3    Angenent, L.T.4
  • 9
    • 84878637526 scopus 로고    scopus 로고
    • Production of fuels and chemicals from waste by microbiomes
    • Marshall CW, LaBelle EV, May HD (2013) Production of fuels and chemicals from waste by microbiomes. Curr Opin Biotech 24: 391-397.
    • (2013) Curr Opin Biotech , vol.24 , pp. 391-397
    • Marshall, C.W.1    LaBelle, E.V.2    May, H.D.3
  • 10
    • 24144447031 scopus 로고    scopus 로고
    • The contribution of species richness and composition to bacterial services
    • DOI 10.1038/nature03891
    • Bell T, Newman JA, Silverman BW, Turner SL, Lilley AK (2005) The contribution of species richness and composition to bacterial services. Nature 436: 1157-1160. (Pubitemid 41232293)
    • (2005) Nature , vol.436 , Issue.7054 , pp. 1157-1160
    • Bell, T.1    Newman, J.A.2    Silverman, B.W.3    Turner, S.L.4    Lilley, A.K.5
  • 11
    • 63849310200 scopus 로고    scopus 로고
    • Initial community evenness favours functionality under selective stress
    • doi:10.1038/Nature07840
    • Wittebolle L, Marzorati M, Clement L, Balloi A, Daffonchio D, et al. (2009) Initial community evenness favours functionality under selective stress. Nature 458: 623-626. doi:10.1038/Nature07840.
    • (2009) Nature , vol.458 , pp. 623-626
    • Wittebolle, L.1    Marzorati, M.2    Clement, L.3    Balloi, A.4    Daffonchio, D.5
  • 12
    • 0035214565 scopus 로고    scopus 로고
    • Bioaugmentation of soils by increasing microbial richness: Missing links
    • DOI 10.1046/j.1462-2920.2001.00236.x
    • Dejonghe W, Boon N, Seghers D, Top EM, Verstraete W (2001) Bioaugmentation of soils by increasing microbial richness: missing links. Environ Microbiol 3: 649-657. (Pubitemid 33136759)
    • (2001) Environmental Microbiology , vol.3 , Issue.10 , pp. 649-657
    • Dejonghe, W.1    Boon, N.2    Seghers, D.3    Top, E.M.4    Verstraete, W.5
  • 13
    • 77955850166 scopus 로고    scopus 로고
    • Structure and dynamics of the microbial communities underlying the carboxylate platform for biofuel production
    • Hollister EB, Forrest AK, Wilkinson HH, Ebbole DJ, Malfatti SA, et al. (2010) Structure and dynamics of the microbial communities underlying the carboxylate platform for biofuel production. Appl Microbiol Biot 88: 389-399.
    • (2010) Appl Microbiol Biot , vol.88 , pp. 389-399
    • Hollister, E.B.1    Forrest, A.K.2    Wilkinson, H.H.3    Ebbole, D.J.4    Malfatti, S.A.5
  • 14
  • 15
    • 84872399032 scopus 로고    scopus 로고
    • Practice and prospects of microbial preservation
    • doi:10.1111/1574-6968.12034
    • Prakash O, Nimonkar Y, Shouche YS (2013) Practice and prospects of microbial preservation. Fems Microbiol Lett 339: 1-9. doi:10.1111/1574-6968. 12034.
    • (2013) Fems Microbiol Lett , vol.339 , pp. 1-9
    • Prakash, O.1    Nimonkar, Y.2    Shouche, Y.S.3
  • 16
    • 84862653983 scopus 로고    scopus 로고
    • Safeguarding bacterial resources promotes biotechnological innovation
    • doi:10.1007/s00253-011-3797-y
    • Heylen K, Hoefman S, Vekeman B, Peiren J, De Vos P (2012) Safeguarding bacterial resources promotes biotechnological innovation. Appl Microbiol Biot 94: 565-574. doi:10.1007/s00253-011-3797-y.
    • (2012) Appl Microbiol Biot , vol.94 , pp. 565-574
    • Heylen, K.1    Hoefman, S.2    Vekeman, B.3    Peiren, J.4    De Vos, P.5
  • 17
    • 0037672413 scopus 로고    scopus 로고
    • Protectants used in the cryopreservation of microorganisms
    • doi:10.1016/s0011-2240(03)00046-4
    • Hubálek Z (2003) Protectants used in the cryopreservation of microorganisms. Cryobiology 46: 205-229. doi:10.1016/s0011-2240(03)00046-4.
    • (2003) Cryobiology , vol.46 , pp. 205-229
    • Hubálek, Z.1
  • 18
    • 84859970117 scopus 로고    scopus 로고
    • Survival or Revival: Long-Term Preservation Induces a Reversible Viable but Non-Culturable State in Methane-Oxidizing Bacteria
    • doi:10.1371/ journal.pone.0034196
    • Hoefman S, Van Hoorde K, Boon N, Vandamme P, De Vos P, et al. (2012) Survival or Revival: Long-Term Preservation Induces a Reversible Viable but Non-Culturable State in Methane-Oxidizing Bacteria. Plos One 7. doi:10.1371/ journal.pone.0034196.
    • (2012) Plos One , vol.7
    • Hoefman, S.1    Van Hoorde, K.2    Boon, N.3    Vandamme, P.4    De Vos, P.5
  • 19
    • 84876985201 scopus 로고    scopus 로고
    • Efficient cryopreservation protocol enables accessibility of a broad range of ammonia-oxidizing bacteria for the scientific community
    • Hoefman S, Pommerening-Roser A, Samyn E, De Vos P, Heylen K (2013) Efficient cryopreservation protocol enables accessibility of a broad range of ammonia-oxidizing bacteria for the scientific community. Research in Microbiology 164: 288-292.
    • (2013) Research in Microbiology , vol.164 , pp. 288-292
    • Hoefman, S.1    Pommerening-Roser, A.2    Samyn, E.3    De Vos, P.4    Heylen, K.5
  • 20
    • 84861162562 scopus 로고    scopus 로고
    • Rapid and Simple Cryopreservation of Anaerobic Ammonium-Oxidizing Bacteria
    • doi:10.1128/Aem.07501-11
    • Heylen K, Ettwig K, Hu ZY, Jetten M, Kartal B (2012) Rapid and Simple Cryopreservation of Anaerobic Ammonium-Oxidizing Bacteria. Appl Environ Microb 78: 3010-3013. doi:10.1128/Aem.07501-11.
    • (2012) Appl Environ Microb , vol.78 , pp. 3010-3013
    • Heylen, K.1    Ettwig, K.2    Hu, Z.Y.3    Jetten, M.4    Kartal, B.5
  • 21
    • 84887606614 scopus 로고    scopus 로고
    • A generally applicable cryopreservation method for nitrite-oxidizing bacteria
    • doi:10.1016/j.syapm.2013.07.002
    • Vekeman B, Hoefman S, De Vos P, Spieck E, Heylen K (2013) A generally applicable cryopreservation method for nitrite-oxidizing bacteria. Systematic and applied microbiology 36: 579-584. doi:10.1016/j.syapm.2013.07.002.
    • (2013) Systematic and Applied Microbiology , vol.36 , pp. 579-584
    • Vekeman, B.1    Hoefman, S.2    De Vos, P.3    Spieck, E.4    Heylen, K.5
  • 22
    • 34247614557 scopus 로고    scopus 로고
    • Reactivation of aerobic and anaerobic ammonium oxidizers in OLAND biomass after long-term storage
    • DOI 10.1007/s00253-006-0770-2
    • Vlaeminck SE, Geets J, Vervaeren H, Boon N, Verstraete W (2007) Reactivation of aerobic and anaerobic ammonium oxidizers in OLAND biomass after long-term storage. Appl Microbiol Biot 74: 1376-1384. doi:10.1007/s00253-006- 0770-2. (Pubitemid 46674065)
    • (2007) Applied Microbiology and Biotechnology , vol.74 , Issue.6 , pp. 1376-1384
    • Vlaeminck, S.E.1    Geets, J.2    Vervaeren, H.3    Boon, N.4    Verstraete, W.5
  • 23
    • 84862309942 scopus 로고    scopus 로고
    • Standardized Frozen Preparation for Transplantation of Fecal Microbiota for Recurrent Clostridium difficile Infection
    • doi:10.1038/ajg.2011.482
    • Hamilton MJ, Weingarden AR, Sadowsky MJ, Khoruts A (2012) Standardized Frozen Preparation for Transplantation of Fecal Microbiota for Recurrent Clostridium difficile Infection. Am J Gastroenterol 107: 761-767. doi:10.1038/ajg.2011.482.
    • (2012) Am J Gastroenterol , vol.107 , pp. 761-767
    • Hamilton, M.J.1    Weingarden, A.R.2    Sadowsky, M.J.3    Khoruts, A.4
  • 24
    • 33646079869 scopus 로고    scopus 로고
    • Long-term storage conditions for carriers with denitrifying biomass of the fluidized, methanol-fed denitrification reactor of the Montreal Biodome, and the impact on denitrifying activity and bacterial population
    • Laurin V, Labbe V, Juteau P, Parent S, Villemur R (2006) Long-term storage conditions for carriers with denitrifying biomass of the fluidized, methanol-fed denitrification reactor of the Montreal Biodome, and the impact on denitrifying activity and bacterial population. Water Res 40: 1836-1840.
    • (2006) Water Res , vol.40 , pp. 1836-1840
    • Laurin, V.1    Labbe, V.2    Juteau, P.3    Parent, S.4    Villemur, R.5
  • 26
    • 0032890019 scopus 로고    scopus 로고
    • Effect of preservation techniques on the regeneration of gel entrapped nitrifying sludge
    • DOI 10.1016/S0043-1354(98)00200-0, PII S0043135498002000
    • Vogelsang C, Gollembiewski K, Ostgaard K (1999) Effect of preservation techniques on the regeneration of gel entrapped nitrifying sludge. Water Res 33: 164-168. (Pubitemid 28554440)
    • (1999) Water Research , vol.33 , Issue.1 , pp. 164-168
    • Vogelsang, C.1    Gollembiewski, K.2    Ostgaard, K.3
  • 27
    • 77955557119 scopus 로고    scopus 로고
    • Copper enhances the activity and salt resistance of mixed methane-oxidizing communities
    • doi:10.1007/s00253-010-2702-4
    • van der Ha D, Hoefman S, Boeckx P, Verstraete W, Boon N (2010) Copper enhances the activity and salt resistance of mixed methane-oxidizing communities. Appl Microbiol Biot 87: 2355-2363. doi:10.1007/s00253-010-2702-4.
    • (2010) Appl Microbiol Biot , vol.87 , pp. 2355-2363
    • Van Der Ha, D.1    Hoefman, S.2    Boeckx, P.3    Verstraete, W.4    Boon, N.5
  • 28
    • 84859832294 scopus 로고    scopus 로고
    • Microbial resource management of one-stage partial nitritation/anammox
    • doi:10.1111/j.1751-7915.2012.00341.x
    • Vlaeminck SE, De Clippeleir H, Verstraete W (2012) Microbial resource management of one-stage partial nitritation/anammox. Microb Biotechnol 5: 433-448. doi:10.1111/j.1751-7915.2012.00341.x.
    • (2012) Microb Biotechnol , vol.5 , pp. 433-448
    • Vlaeminck, S.E.1    De Clippeleir, H.2    Verstraete, W.3
  • 29
    • 77949652591 scopus 로고    scopus 로고
    • Methanotrophs: Multifunctional bacteria with promising applications in environmental bioengineering
    • doi:10.1016/j.bej.2010.01.003
    • Jiang H, Chen Y, Jiang PX, Zhang C, Smith TJ, et al. (2010) Methanotrophs: Multifunctional bacteria with promising applications in environmental bioengineering. Biochem Eng J 49: 277-288. doi:10.1016/j.bej.2010. 01.003.
    • (2010) Biochem Eng J , vol.49 , pp. 277-288
    • Jiang, H.1    Chen, Y.2    Jiang, P.X.3    Zhang, C.4    Smith, T.J.5
  • 30
    • 33745964000 scopus 로고    scopus 로고
    • Characterizing a stable methane-utilizing mixed culture used in the synthesis of a high-quality biopolymer in an open system
    • DOI 10.1111/j.1365-2672.2006.02960.x
    • Helm J, Wendlandt KD, Rogge G, Kappelmeyer U (2006) Characterizing a stable methane-utilizing mixed culture used in the synthesis of a high-quality biopolymer in an open system. J Appl Microbiol 101: 387-395. doi:10.1111/j.1365-2672.2006.02960.x. (Pubitemid 44060419)
    • (2006) Journal of Applied Microbiology , vol.101 , Issue.2 , pp. 387-395
    • Helm, J.1    Wendlandt, K.-D.2    Rogge, G.3    Kappelmeyer, U.4
  • 31
    • 84856588451 scopus 로고    scopus 로고
    • Cyclic, alternating methane and nitrogen limitation increases PHB production in a methanotrophic community
    • doi:10.1016/j.biortech.2011.12.044
    • Pieja AJ, Sundstrom ER, Criddle CS (2012) Cyclic, alternating methane and nitrogen limitation increases PHB production in a methanotrophic community. Bioresource Technol 107: 385-392. doi:10.1016/j.biortech.2011.12.044.
    • (2012) Bioresource Technol , vol.107 , pp. 385-392
    • Pieja, A.J.1    Sundstrom, E.R.2    Criddle, C.S.3
  • 32
    • 0033778868 scopus 로고    scopus 로고
    • Possible interactions within a methanotrophic-heterotrophic groundwater community able to transform linear alkylbenzene-sulfonates
    • Hrsak D, Begonja A (2000) Possible interactions within a methanotrophic-heterotrophic groundwater community able to transform linear alkylbenzene-sulfonates. Appl Environ Microb 66: 4433-4439.
    • (2000) Appl Environ Microb , vol.66 , pp. 4433-4439
    • Hrsak, D.1    Begonja, A.2
  • 33
    • 84865491849 scopus 로고    scopus 로고
    • Efficient Total Nitrogen Removal in an Ammonia Gas Biofilter through High-Rate OLAND
    • doi:10.1021/Es301717b
    • De Clippeleir H, Courtens E, Mosquera M, Vlaeminck SE, Smets BF, et al. (2012) Efficient Total Nitrogen Removal in an Ammonia Gas Biofilter through High-Rate OLAND. Environ Sci Technol 46: 8826-8833. doi:10.1021/Es301717b.
    • (2012) Environ Sci Technol , vol.46 , pp. 8826-8833
    • De Clippeleir, H.1    Courtens, E.2    Mosquera, M.3    Vlaeminck, S.E.4    Smets, B.F.5
  • 34
    • 0031788052 scopus 로고    scopus 로고
    • Ammonium removal by the oxygen-limited autotrophic nitrification- denitrification system
    • Kuai LP, Verstraete W (1998) Ammonium removal by the oxygen-limited autotrophic nitrification-denitrification system. Appl Environ Microb 64: 4500-4506.
    • (1998) Appl Environ Microb , vol.64 , pp. 4500-4506
    • Kuai, L.P.1    Verstraete, W.2
  • 35
    • 0038654443 scopus 로고    scopus 로고
    • Characterization of an autotrophic nitrogen-removing biofilm from a highly loaded lab-scale rotating biological contactor
    • Pynaert K, Smets BF, Wyffels S, Beheydt D, Siciliano SD, et al. (2003) Characterization of an autotrophic nitrogen-removing biofilm from a highly loaded lab-scale rotating biological contactor. Appl Environ Microb 69: 3626-3635. doi:10.1128/Aem.69.6.3626-3635.2003. (Pubitemid 36693374)
    • (2003) Applied and Environmental Microbiology , vol.69 , Issue.6 , pp. 3626-3635
    • Pynaert, K.1    Smets, B.F.2    Wyffels, S.3    Beheydt, D.4    Siciliano, S.D.5    Verstraete, W.6
  • 39
    • 0034468557 scopus 로고    scopus 로고
    • Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition
    • DOI 10.1128/AEM.66.12.5488-5491.2000
    • Griffiths RI, Whiteley AS, O'Donnell AG, Bailey MJ (2000) Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Appl Environ Microb 66: 5488-5491. (Pubitemid 32217162)
    • (2000) Applied and Environmental Microbiology , vol.66 , Issue.12 , pp. 5488-5491
    • Griffiths, R.I.1    Whiteley, A.S.2    O'Donnell, A.G.3    Bailey, M.J.4
  • 40
    • 84906944491 scopus 로고    scopus 로고
    • Comparing the anterior nare bacterial community of two discrete human populations using Illumina amplicon sequencing
    • doi:10.1111/1462-2920.12362
    • Camarinha-Silva A, Jáuregui R, Chaves-Moreno D, Oxley A, Schaumburg F, et al. (2013) Comparing the anterior nare bacterial community of two discrete human populations using Illumina amplicon sequencing. Environ Microbiol. doi:10.1111/1462-2920.12362.
    • (2013) Environ Microbiol
    • Camarinha-Silva, A.1    Jáuregui, R.2    Chaves-Moreno, D.3    Oxley, A.4    Schaumburg, F.5
  • 41
    • 84855589634 scopus 로고    scopus 로고
    • In-depth Characterization via Complementing Culture-Independent Approaches of the Microbial Community in an Acidic Hot Spring of the Colombian Andes
    • doi:10.1007/s00248-011-9943-3
    • Bohorquez L, Delgado-Serrano L, López G, Osorio-Forero C, Klepac-Ceraj V, et al. (2012) In-depth Characterization via Complementing Culture-Independent Approaches of the Microbial Community in an Acidic Hot Spring of the Colombian Andes. Microb Ecol 63: 103-115. doi:10.1007/s00248-011- 9943-3.
    • (2012) Microb Ecol , vol.63 , pp. 103-115
    • Bohorquez, L.1    Delgado-Serrano, L.2    López, G.3    Osorio-Forero, C.4    Klepac-Ceraj, V.5
  • 42
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
    • doi:10.1128/Aem.01541-09
    • Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, et al. (2009) Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities. Appl Environ Microb 75: 7537-7541. doi:10.1128/Aem.01541-09.
    • (2009) Appl Environ Microb , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5
  • 43
    • 79953029779 scopus 로고    scopus 로고
    • Recovery of methanotrophs from disturbance: Population dynamics, evenness and functioning
    • doi:10.1038/ismej.2010.163
    • Ho A, Luke C, Frenzel P (2011) Recovery of methanotrophs from disturbance: population dynamics, evenness and functioning. Isme Journal 5: 750-758. doi:10.1038/ismej.2010.163.
    • (2011) Isme Journal , vol.5 , pp. 750-758
    • Ho, A.1    Luke, C.2    Frenzel, P.3
  • 46
    • 84863304598 scopus 로고    scopus 로고
    • R Development Core Team Vienna, Austria: R Foundation for Statistical Computing
    • R Development Core Team (2013) R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing.
    • (2013) R: A Language and Environment for Statistical Computing
  • 48
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • doi:10.1093/bioinformatics/btl446
    • Stamatakis A (2006) RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690. doi:10.1093/bioinformatics/btl446.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 49
    • 84903273951 scopus 로고    scopus 로고
    • Large-scale Maximum Likelihood-based Phylogenetic Analysis on the IBM BlueGene/L
    • Ott M, Zola J, Aluru S, Stamatakis A (2010) Large-scale Maximum Likelihood-based Phylogenetic Analysis on the IBM BlueGene/L. 2007 Acm/Ieee Sc07 Conference: 466-476.
    • (2010) 2007 Acm/Ieee Sc07 Conference , pp. 466-476
    • Ott, M.1    Zola, J.2    Aluru, S.3    Stamatakis, A.4
  • 50
    • 79960004119 scopus 로고    scopus 로고
    • Interactive Tree Of Life v2: Online annotation and display of phylogenetic trees made easy
    • doi:10.1093/Nar/Gkr201
    • Letunic I, Bork P (2011) Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res 39: W475-W478. doi:10.1093/Nar/Gkr201.
    • (2011) Nucleic Acids Res , vol.39
    • Letunic, I.1    Bork, P.2
  • 51
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • DOI 10.1128/AEM.00062-07
    • Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microb 73: 5261-5267. doi:10.1128/Aem.00062-07. (Pubitemid 47326658)
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.16 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 52
    • 58149200948 scopus 로고    scopus 로고
    • The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
    • doi:10.1093/Nar/Gkn879
    • Cole JR, Wang Q, Cardenas E, Fish J, Chai B, et al. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-D145. doi:10.1093/Nar/Gkn879.
    • (2009) Nucleic Acids Res , vol.37
    • Cole, J.R.1    Wang, Q.2    Cardenas, E.3    Fish, J.4    Chai, B.5
  • 53
    • 84355166737 scopus 로고    scopus 로고
    • Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys
    • doi:10.1038/ismej.2011.82
    • Werner JJ, Koren O, Hugenholtz P, DeSantis TZ, Walters WA, et al. (2012) Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys. Isme Journal 6: 94-103. doi:10.1038/ismej.2011.82.
    • (2012) Isme Journal , vol.6 , pp. 94-103
    • Werner, J.J.1    Koren, O.2    Hugenholtz, P.3    DeSantis, T.Z.4    Walters, W.A.5
  • 54
    • 84875391826 scopus 로고    scopus 로고
    • Rank-based multiple test procedures and simultaneous confidence intervals
    • Konietschke F, Hothorn LA (2012) Rank-based multiple test procedures and simultaneous confidence intervals. Electron J Stat 6: 738-759.
    • (2012) Electron J Stat , vol.6 , pp. 738-759
    • Konietschke, F.1    Hothorn, L.A.2
  • 55
    • 41649084544 scopus 로고    scopus 로고
    • The impact of OECD best practice on the validation of cryopreservation techniques for microorganisms
    • Smith D, Ryan MJ (2008) The impact of OECD best practice on the validation of cryopreservation techniques for microorganisms. Cryo Letters 29: 63-72. (Pubitemid 351480266)
    • (2008) Cryo-Letters , vol.29 , Issue.1 , pp. 63-72
    • Smith, D.1    Ryan, M.J.2
  • 57
    • 84877130263 scopus 로고    scopus 로고
    • Selection of associated heterotrophs by methane-oxidizing bacteria at different copper concentrations
    • doi:10.1007/s10482-012-9835-7
    • van der Ha D, Vanwonterghem I, Hoefman S, De Vos P, Boon N (2013) Selection of associated heterotrophs by methane-oxidizing bacteria at different copper concentrations. Anton Leeuw Int J G 103: 527-537. doi:10.1007/s10482-012- 9835-7.
    • (2013) Anton Leeuw Int J G , vol.103 , pp. 527-537
    • Van Der Ha, D.1    Vanwonterghem, I.2    Hoefman, S.3    De Vos, P.4    Boon, N.5
  • 58
    • 35948978521 scopus 로고    scopus 로고
    • A methane-driven microbial food web in a wetland rice soil
    • DOI 10.1111/j.1462-2920.2007.01414.x
    • Murase J, Frenzel P (2007) A methane-driven microbial food web in a wetland rice soil. Environ Microbiol 9: 3025-3034. doi:10.1111/j.1462-2920.2007. 01414.x. (Pubitemid 350076291)
    • (2007) Environmental Microbiology , vol.9 , Issue.12 , pp. 3025-3034
    • Murase, J.1    Frenzel, P.2
  • 59
    • 84903297392 scopus 로고    scopus 로고
    • The more, the merrier: Heterotroph richness stimulates methanotrophic activity
    • in press In Press
    • Ho A, De Roy K, Thas O, De Neve J, Hoefman S, et al. (in press) The more, the merrier: heterotroph richness stimulates methanotrophic activity. ISME Journal: In Press.
    • ISME Journal
    • Ho, A.1    De Roy, K.2    Thas, O.3    De Neve, J.4    Hoefman, S.5
  • 60
    • 84876783121 scopus 로고    scopus 로고
    • Conceptualizing functional traits and ecological characteristics of methane-oxidizing bacteria as life strategies
    • doi:10.1111/j.1758-2229.2012.00370.x
    • Ho A, Kerckhof F-M, Luke C, Reim A, Krause S, et al. (2013) Conceptualizing functional traits and ecological characteristics of methane-oxidizing bacteria as life strategies. Env Microbiol Rep. doi:10.1111/j.1758-2229.2012.00370.x.
    • (2013) Env Microbiol Rep
    • Ho, A.1    Kerckhof, F.-M.2    Luke, C.3    Reim, A.4    Krause, S.5
  • 61
    • 84858588445 scopus 로고    scopus 로고
    • Methane source strength and energy flow shape methanotrophic communities in oxygen-methane counter-gradients
    • Krause S, Luke C, Frenzel P (2012) Methane source strength and energy flow shape methanotrophic communities in oxygen-methane counter-gradients. Env Microbiol Rep 4: 203-208.
    • (2012) Env Microbiol Rep , vol.4 , pp. 203-208
    • Krause, S.1    Luke, C.2    Frenzel, P.3
  • 62
    • 11144303552 scopus 로고    scopus 로고
    • Comparing field and microcosm experiments: A case study on methano- and methylo-trophic bacteria in paddy soil
    • DOI 10.1016/j.femsec.2004.09.007, PII S0168649604002661
    • Eller G, Kruger M, Frenzel P (2005) Comparing field and microcosm experiments: a case study on methano- and methylo-trophic bacteria in paddy soil. Fems Microbiol Ecol 51: 279-291. (Pubitemid 40038387)
    • (2005) FEMS Microbiology Ecology , vol.51 , Issue.2 , pp. 279-291
    • Eller, G.1    Kruger, M.2    Frenzel, P.3
  • 63
    • 0014793109 scopus 로고
    • Enrichment, Isolation and Some Properties of Methane-Utilizing Bacteria
    • Whittenb R, Phillips KC, Wilkinso Jf (1970) Enrichment, Isolation and Some Properties of Methane-Utilizing Bacteria. J Gen Microbiol 61: 205-&.
    • (1970) J Gen Microbiol , vol.61 , pp. 205
    • Whittenb, R.1    Phillips, K.C.2    Wilkinso, J.F.3
  • 64
    • 84889096133 scopus 로고    scopus 로고
    • Exploration and prediction of interactions between methanotrophs and heterotrophs
    • doi:10.1016/j.resmic.2013.08.006
    • Stock M, Hoefman S, Kerckhof F-M, Boon N, De Vos P, et al. (2013) Exploration and prediction of interactions between methanotrophs and heterotrophs. Research in microbiology 164: 1045-1054. doi:10.1016/j.resmic. 2013.08.006.
    • (2013) Research in Microbiology , vol.164 , pp. 1045-1054
    • Stock, M.1    Hoefman, S.2    Kerckhof, F.-M.3    Boon, N.4    De Vos, P.5
  • 65
    • 83155193043 scopus 로고    scopus 로고
    • Stimulation of Methanotrophic Growth in Cocultures by Cobalamin Excreted by Rhizobia
    • doi:10.1128/Aem.05834-11
    • Iguchi H, Yurimoto H, Sakai Y (2011) Stimulation of Methanotrophic Growth in Cocultures by Cobalamin Excreted by Rhizobia. Appl Environ Microb 77: 8509-8515. doi:10.1128/Aem.05834-11.
    • (2011) Appl Environ Microb , vol.77 , pp. 8509-8515
    • Iguchi, H.1    Yurimoto, H.2    Sakai, Y.3
  • 66
    • 0031680032 scopus 로고    scopus 로고
    • Growth characteristics and metabolic activities of the methanotrophic- heterotrophic groundwater community
    • DOI 10.1046/j.1365-2672.1998.853505.x
    • Hrsak D, Begonja A (1998) Growth characteristics and metabolic activities of the methanotrophic-heterotrophic groundwater community. J Appl Microbiol 85: 448-456. doi:10.1046/j.1365-2672.1998.853505.x. (Pubitemid 28419346)
    • (1998) Journal of Applied Microbiology , vol.85 , Issue.3 , pp. 448-456
    • Hrsak, D.1    Begonja, A.2
  • 67
    • 84898618397 scopus 로고    scopus 로고
    • Microbial community and function of enrichment cultures with methane and toluene
    • doi:10.1007/s00253-013-5297-8
    • Su Y, Xia F-F, Tian B-H, Li W, He R (2013) Microbial community and function of enrichment cultures with methane and toluene. Appl Microbiol Biot: 1-11. doi:10.1007/s00253-013-5297-8.
    • (2013) Appl Microbiol Biot , pp. 1-11
    • Su, Y.1    Xia, F.-F.2    Tian, B.-H.3    Li, W.4    He, R.5
  • 68
    • 75749091833 scopus 로고    scopus 로고
    • Aggregate Size and Architecture Determine Microbial Activity Balance for One-Stage Partial Nitritation and Anammox
    • doi:10.1128/Aem.02337-09
    • Vlaeminck SE, Terada A, Smets BF, De Clippeleir H, Schaubroeck T, et al. (2010) Aggregate Size and Architecture Determine Microbial Activity Balance for One-Stage Partial Nitritation and Anammox. Appl Environ Microb 76: 900-909. doi:10.1128/Aem.02337-09.
    • (2010) Appl Environ Microb , vol.76 , pp. 900-909
    • Vlaeminck, S.E.1    Terada, A.2    Smets, B.F.3    De Clippeleir, H.4    Schaubroeck, T.5
  • 69
    • 0038342846 scopus 로고    scopus 로고
    • Microbial composition and structure of a rotating biological contactor biofilm treating ammonium-rich wastewater without organic carbon
    • DOI 10.1007/s00248-002-2037-5
    • Egli K, Bosshard F, Werlen C, Lais P, Siegrist H, et al. (2003) Microbial composition and structure of a rotating biological contactor biofilm treating ammonium-rich wastewater without organic carbon. Microb Ecol 45: 419-432. doi:10.1007/s00248-002-2037-5. (Pubitemid 36922383)
    • (2003) Microbial Ecology , vol.45 , Issue.4 , pp. 419-432
    • Egli, K.1    Bosshard, F.2    Werlen, C.3    Lais, P.4    Siegrist, H.5    Zehnder, A.J.B.6    Van Der, M.J.R.7
  • 70
    • 84878245112 scopus 로고    scopus 로고
    • Characterization and Comparison of Bacterial Communities Selected in Conventional Activated Sludge and Membrane Bioreactor Pilot Plants: A Focus on Nitrospira and Planctomycetes Bacterial Phyla
    • Chiellini C, Munz G, Petroni G, Lubello C, Mori G, et al. (2013) Characterization and Comparison of Bacterial Communities Selected in Conventional Activated Sludge and Membrane Bioreactor Pilot Plants: A Focus on Nitrospira and Planctomycetes Bacterial Phyla. Curr Microbiol 67: 77-90.
    • (2013) Curr Microbiol , vol.67 , pp. 77-90
    • Chiellini, C.1    Munz, G.2    Petroni, G.3    Lubello, C.4    Mori, G.5
  • 71
    • 84886254937 scopus 로고    scopus 로고
    • Molecular diversity of the Planctomycetes in the human gut microbiota in France and Senegal
    • doi:10.1111/apm.12087
    • Cayrou C, Sambe B, Armougom F, Raoult D, Drancourt M (2013) Molecular diversity of the Planctomycetes in the human gut microbiota in France and Senegal. Apmis 121: 1082-1090. doi:10.1111/apm.12087.
    • (2013) Apmis , vol.121 , pp. 1082-1090
    • Cayrou, C.1    Sambe, B.2    Armougom, F.3    Raoult, D.4    Drancourt, M.5
  • 72
    • 11244354731 scopus 로고    scopus 로고
    • Cryoprotectants: The essential antifreezes to protect life in the frozen state
    • Fuller BJ (2004) Cryoprotectants: The essential antifreezes to protect life in the frozen state. Cryoletters 25: 375-388.
    • (2004) Cryoletters , vol.25 , pp. 375-388
    • Fuller, B.J.1
  • 73
    • 84889661561 scopus 로고    scopus 로고
    • Quantifying the impact of storage procedures for faecal bacteriotherapy in the critically endangered New Zealand Parrot, the Kakapo (Strigops habroptilus)
    • doi:10.1002/zoo.21098
    • Waite DW, Deines P, Taylor MW (2013) Quantifying the impact of storage procedures for faecal bacteriotherapy in the critically endangered New Zealand Parrot, the Kakapo (Strigops habroptilus). Zoo biology 32: 620-625. doi:10.1002/zoo.21098.
    • (2013) Zoo Biology , vol.32 , pp. 620-625
    • Waite, D.W.1    Deines, P.2    Taylor, M.W.3
  • 74
    • 33646827806 scopus 로고    scopus 로고
    • Multivariate dispersion as a measure of beta diversity
    • DOI 10.1111/j.1461-0248.2006.00926.x
    • Anderson MJ, Ellingsen KE, McArdle BH (2006) Multivariate dispersion as a measure of beta diversity. Ecol Lett 9: 683-693. doi:10.1111/j.1461-0248.2006. 00926.x. (Pubitemid 43773911)
    • (2006) Ecology Letters , vol.9 , Issue.6 , pp. 683-693
    • Anderson, M.J.1    Ellingsen, K.E.2    McArdle, B.H.3


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