Differential expression of microRNAs and their targets reveals a possible dual role in physiological bark disorder in rubber tree

Journal of Plant Physiology

Volumn 171, Issue 13, 2014, Pages 1117-1126

  Lertpanyasampatha, Manassawe ^a   Viboonjun, Unchera ^a   Kongsawadworakul, Panida ^a   Chrestin, Hervé ^a,b   Narangajavana, Jarunya ^a  

^a Mahidol University   (Thailand)

^b INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

Author keywords

MicroRNA; Rubber tree; Trunk phloem necrosis

Indexed keywords

COMPLEMENTARY DNA; LATEX; MICRORNA; PLANT RNA;

BARK; GENE EXPRESSION REGULATION; GENETICS; HEVEA; METABOLISM; PHLOEM; PHYSIOLOGICAL STRESS; PHYSIOLOGY;

DNA, COMPLEMENTARY; GENE EXPRESSION REGULATION, PLANT; HEVEA; LATEX; MICRORNAS; PHLOEM; PLANT BARK; RNA, PLANT; STRESS, PHYSIOLOGICAL;

EID: 84903192712     PISSN: 01761617     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jplph.2014.05.001     Document Type: Article

References (37)

1. Baima S., Possenti M., Matteucci A., Wisman E., Altamura M.M., Ruberti I., et al. The Arabidopsis ATHB-8 HD-Zip protein acts as a differentiation-promoting transcriptional factor of the vascular meristems. Plant Physiol 2001, 126:643-655.
2. Chen S., Peng S., Huang G., Wu K., Fu X., Chen Z. Association of decreased expression of a Myb transcription factor with the TPD syndrome in Hevea brasiliensis. Plant Mol Biol 2002, 51:51-58.
3. Chen Z.H., Bao M.L., Sun Y.Z., Xu X.H., Wang J.H., Han N., et al. Regulation of auxin response by miR393-targeted transport inhibitor response protein 1 is involved in normal development in Arabidopsis. Plant Mol Biol 2011, 77:619-629.
4. Chrestin H., Sookmark U., Trouslot P., Pellegrin F., Nandris D. Rubber tree (Hevea brasiliensis) bark necrosis syndrome. 3. A physiological disease linked to impaired cyanide metabolism. Plant Dis 2004, 88:1047.
5. Cote C.L., Boileau F., Roy V., Quellet M., Levasseur C., Morency M.J., et al. Gene family structure, expression and functional analysis of HD-Zip III genes in angiosperm and gymnosperm forest trees. BMC Plant Biol 2010, 10:273.
6. Dai X., Zhao P. psRNATarget: a plant small RNA target analysis server. Nucleic Acids Res 2011, 39(web server issue):W155-W159.
7. Das G., Raj S., Pothen J., Sethuraj M.R., Sinha T.P., Sen-Mandi S. Status of free radical and its scavenging system with stimulation in Hevea brasiliensis. Plant Physiol Biochem 1998, 25:47-50.
8. de Faÿ E. Histo- and cytopathology of trunk phloem necrosis, a form of rubber tree (Hevea brasiliensis Müll. Arg.) tapping panel dryness. Aust J Bot 2011, 59:563-574.
9. Du J., Miura E., Robischon M., Martinez C., Groover A. The populus class III HD ZIP transcription factor POPCORONA affects cell differentiation during secondary growth of woody stems. PLoS ONE 2011, 6:e17458.
10. Duan C., Rio M., Leclercq J., Bonnot F., Oliver G., Montoro P. Gene expression pattern in response to wounding, methyl jasmonate and ethylene in the bark of Hevea brasiliensis. Tree Physiol 2010, 30:1349-1359.
11. Gébelin V., Argout X., Engchuan W., Pitollat B., Duan C., Montoro P., et al. Identification of novel miRNAs in Hevea brasiliensis and computational prediction of their targets. BMC Plant Biol 2012, 12:18.
12. Gébelin V., Leclercq J., Argout X., Chaidamsari T., Hu S., Tang C., et al. The small RNA profile in latex from Hevea brasiliensis trees is affected by tapping panel dryness. Tree Physiol 2013, 31:1084-1098.
13. Gébelin V., Leclercq J., Hu S., Tang C., Montoro P. Regulation of MIR genes in response to abiotic stress in Hevea brasiliensis. Int J Mol Sci 2013, 14:19587-19604.
14. Guilfoyle T. Sticking with auxin. Nature 2007, 446:621-622.
15. Kim J., Jung J.H., Reyes J.L., Kim Y.S., Kim S.Y., Chung K.S., et al. MicroRNA-directed cleavage of ATHB15 mRNA regulates vascular development in Arabidopsis inflorescence stems. Plant J 2005, 42:84-94.
16. Kruszka K., Pieczynski M., Windels D., Bielewicz D., Jarmolowski A., Szweykowska-Kulinska Z., et al. Role of microRNAs and other sRNAs of plants in their changing environments. J Plant Physiol 2012, 169:1664-1672.
17. Kumar A., Pandey D.M., Abraham T., Mathew J., Ramachandran P., Malathi V.G. Determination of biotic aetiology of tapping panel dryness (TPD) syndrome of rubber tree (Hevea brasiliensis) by return-polyacrylamide gel electrophoresis (R-PAGE) technique. Arch Phytopathol Plant Protect 2013, 46:710-720.
18. Lacrotte R., Van De Sype H., Chrestin H. Influence of ethylene on the uptake and use of exogenous sucrose, by the latex cells from Hevea brasiliensis: proposal for an action mechanism. Physiol Veg 1985, 23:187-198.
19. Lertpanyasampatha M., Gao L., Kongsawadworakul P., Viboonjun U., Chrestin H., Liu R., et al. Genome-wide analysis of microRNAs in rubber tree (Hevea Brasiliensis L.) using high-throughput sequencing. Planta 2012, 236:437-445.
20. Li D., Deng Z., Chen C., Xia Z., Wu M., He P., et al. Identification and characterization of genes associated with tapping panel dryness from Hevea brasiliensis latex using suppression subtractive hybridization. BMC Plant Biol 2010, 10:140.
21. Llave C., Franco-Zorrilla J.M., Solano R., Barajas D. MiRNAs in development: methods and protocols. Methods Mol Biol 2011, 732:187-208.
22. Mendes N.D., Freitas A.T., Sagot M.F. Current tools for the identification of miRNA genes and their targets. Nucleic Acids Res 2009, 37:2419-2433.
23. Mwange K.N.K., Hou H.W., Cui K.M. Relationship between endogenous indole-3-acetic acid and abscisic acid changes and bark recovery in Eucommia ulmoides Oliv. J Exp Bot 2003, 54:899-1907.
24. Nandris D., Moreau R., Pellegrin F., Chrestin H., Abina J., Angui P. Rubber tree (Hevea brasiliensis) bark necrosis syndrome. 2. First comprehensive report on causal stresses. Plant Dis 2004, 88:1047.
25. Navarro L., Dunoyer P., Jay F., Arnold B., Dharmasiri N., Estelle M., et al. A plant miRNA contributes to antibacterial resistance by repressing auxin signaling. Science 2006, 312:436-439.
26. Ohashi-Ito K., Fukuda H. HD-Zip III homeobox genes that include a novel member, ZeHB-13 (Zinnia)/ATHB-15 (Arabidopsis) are involved in procambium and xylem cell differentiation. Plant Cell Physiol 2003, 44:1350-1358.
27. Pang Y., Zhang J., Cao J., Yin S.Y., He X.Q., Cui K.M. Phloem transdifferentiation from immature xylem cells during bark regeneration after girdling in Eucommia ulmoides Oliv. J Exp Bot 2008, 59:1341-1351.
28. Parry G., Calderon-Villalobos L.I., Priffe M., Peret B., Dharmasiri S., Itoh H., et al. Complex regulation of TIR1/AFB family of auxin receptors. Proc Natl Acad Sci USA 2009, 106:22540-22545.
29. Pattanasiriwisawa W., Sirinupong N., Suwanmanee P., Daengkanit C., Siritapetawee J. An attempt to analyze the bark disease in Hevea brasiliensis using X-ray absorption near-edge spectroscopy. J Synchrotron Radiat 2009, 16:622-627.
30. Pellegrin F., Nandris D., Chrestin H. Rubber tree (Hevea brasiliensis) bark necrosis syndrome. 1. Still no evidence of a biotic causal agent. Plant Dis 2004, 88:1046.
31. Prigge M.J., Otsuga J.M., Alonso J.R., Ecker G.N., Drews G.N., Clark S.E. Class III homeodomain-leucine zipper gene family members have overlapping, antagonistic, and distinct roles in Arabidopsis development. Plant Cell 2005, 17:61-76.
32. Sunkar R., Li Y.F., Jagadeeswaran G. Functions of microRNAs in plant stress responses. Trends Plant Sci 2012, 17:196-203.
33. Sunkar R., Zhu J.K. Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 2004, 16:2001-2019.
34. Varkonyi-Gasic E., Wu R., Wood M., Walton E.F., Hellens R.P. Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs. Plant Methods 2007, 10.1186/1746-4811-3-12.
35. Venkatachalam P., Thulaseedharan A., Raghothama K. Molecular identification and characterization of a gene associated with the onset of tapping panel dryness (TPD) syndrome in rubber tree (Hevea brasiliensis Muell.) by mRNA differential display. Mol Biotechnol 2009, 41:42-52.
36. Zhang J., Gao G., Chen J.-J., Taylor G., Cui K.-M., He X. Molecular features of secondary vascular tissue regeneration after bark girdling in Populus. New Phytol 2011, 192:869-884.
37. Zhao B., Liang R., Ge L., Li W., Xioa H., Lin H., et al. Identification of drought-induced microRNAs in rice. Biochem Biophys Res Commun 2007, 54:585-590.