메뉴 건너뛰기




Volumn 14, Issue 1, 2014, Pages

Identification, cloning and characterization of the tomato TCP transcription factor family

Author keywords

Tomato; Transcription factors; Yeast one hybrid; Yeast two hybrid

Indexed keywords

ARABIDOPSIS PROTEIN; PROTEIN BINDING; TRANSCRIPTION FACTOR; VEGETABLE PROTEIN;

EID: 84903171240     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-14-157     Document Type: Article
Times cited : (154)

References (57)
  • 1
    • 0033119581 scopus 로고    scopus 로고
    • The TCP domain: a motif found in proteins regulating plant growth and development
    • Cubas P, Lauter N, Doebley J, Coen E. The TCP domain: a motif found in proteins regulating plant growth and development. Plant J 1999, 18(2):215-222.
    • (1999) Plant J , vol.18 , Issue.2 , pp. 215-222
    • Cubas, P.1    Lauter, N.2    Doebley, J.3    Coen, E.4
  • 2
    • 73449098946 scopus 로고    scopus 로고
    • TCP genes: a family snapshot ten years later
    • Martin-Trillo M, Cubas P. TCP genes: a family snapshot ten years later. Trends Plant Sci 2010, 15(1):31-39.
    • (2010) Trends Plant Sci , vol.15 , Issue.1 , pp. 31-39
    • Martin-Trillo, M.1    Cubas, P.2
  • 4
    • 37349117377 scopus 로고    scopus 로고
    • Transcription factor AtTCP14 regulates embryonic growth potential during seed germination in Arabidopsis thaliana
    • Tatematsu K, Nakabayashi K, Kamiya Y, Nambara E. Transcription factor AtTCP14 regulates embryonic growth potential during seed germination in Arabidopsis thaliana. Plant J 2008, 53(1):42-52.
    • (2008) Plant J , vol.53 , Issue.1 , pp. 42-52
    • Tatematsu, K.1    Nakabayashi, K.2    Kamiya, Y.3    Nambara, E.4
  • 5
    • 80053564805 scopus 로고    scopus 로고
    • TCP14 and TCP15 affect internode length and leaf shape in Arabidopsis
    • Kieffer M, Master V, Waites R, Davies B. TCP14 and TCP15 affect internode length and leaf shape in Arabidopsis. Plant J 2011, 68(1):147-158.
    • (2011) Plant J , vol.68 , Issue.1 , pp. 147-158
    • Kieffer, M.1    Master, V.2    Waites, R.3    Davies, B.4
  • 6
    • 63549086879 scopus 로고    scopus 로고
    • In vivo interference with AtTCP20 function induces severe plant growth alterations and deregulates the expression of many genes important for development
    • Herve C, Dabos P, Bardet C, Jauneau A, Auriac MC, Ramboer A, Lacout F, Tremousaygue D. In vivo interference with AtTCP20 function induces severe plant growth alterations and deregulates the expression of many genes important for development. Plant Physiol 2009, 149(3):1462-1477.
    • (2009) Plant Physiol , vol.149 , Issue.3 , pp. 1462-1477
    • Herve, C.1    Dabos, P.2    Bardet, C.3    Jauneau, A.4    Auriac, M.C.5    Ramboer, A.6    Lacout, F.7    Tremousaygue, D.8
  • 8
    • 33745220592 scopus 로고    scopus 로고
    • RNA interference of the Arabidopsis putative transcription factor TCP16 gene results in abortion of early pollen development
    • Takeda T, Amano K, Ohto MA, Nakamura K, Sato S, Kato T, Tabata S, Ueguchi C. RNA interference of the Arabidopsis putative transcription factor TCP16 gene results in abortion of early pollen development. Plant Mol Biol 2006, 61(1-2):165-177.
    • (2006) Plant Mol Biol , vol.61 , Issue.1-2 , pp. 165-177
    • Takeda, T.1    Amano, K.2    Ohto, M.A.3    Nakamura, K.4    Sato, S.5    Kato, T.6    Tabata, S.7    Ueguchi, C.8
  • 9
    • 0029852572 scopus 로고    scopus 로고
    • Origin of floral asymmetry in Antirrhinum
    • Luo D, Carpenter R, Vincent C, Copsey L, Coen E. Origin of floral asymmetry in Antirrhinum. Nature 1996, 383(6603):794-799.
    • (1996) Nature , vol.383 , Issue.6603 , pp. 794-799
    • Luo, D.1    Carpenter, R.2    Vincent, C.3    Copsey, L.4    Coen, E.5
  • 10
    • 77953179269 scopus 로고    scopus 로고
    • TCP1 modulates brassinosteroid biosynthesis by regulating the expression of the key biosynthetic gene DWARF4 in arabidopsis thaliana
    • Guo Z, Fujioka S, Blancaflor EB, Miao S, Gou X, Li J. TCP1 modulates brassinosteroid biosynthesis by regulating the expression of the key biosynthetic gene DWARF4 in arabidopsis thaliana. Plant Cell 2010, 22(4):1161-1173.
    • (2010) Plant Cell , vol.22 , Issue.4 , pp. 1161-1173
    • Guo, Z.1    Fujioka, S.2    Blancaflor, E.B.3    Miao, S.4    Gou, X.5    Li, J.6
  • 11
    • 0030893329 scopus 로고    scopus 로고
    • The evolution of apical dominance in maize
    • Doebley J, Stec A, Hubbard L. The evolution of apical dominance in maize. Nature 1997, 386(6624):485-488.
    • (1997) Nature , vol.386 , Issue.6624 , pp. 485-488
    • Doebley, J.1    Stec, A.2    Hubbard, L.3
  • 12
    • 34250621278 scopus 로고    scopus 로고
    • Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds
    • Aguilar-Martínez JA, Poza-Carrión C, Cubas P. Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds. Plant Cell 2007, 19(2):458-472.
    • (2007) Plant Cell , vol.19 , Issue.2 , pp. 458-472
    • Aguilar-Martínez, J.A.1    Poza-Carrión, C.2    Cubas, P.3
  • 14
    • 2442699294 scopus 로고    scopus 로고
    • CINCINNATA controls both cell differentiation and growth in petal lobes and leaves of antirrhinum
    • Crawford BCW, Nath U, Carpenter R, Coen ES. CINCINNATA controls both cell differentiation and growth in petal lobes and leaves of antirrhinum. Plant Physiol 2004, 135(1):244-253.
    • (2004) Plant Physiol , vol.135 , Issue.1 , pp. 244-253
    • Crawford, B.C.W.1    Nath, U.2    Carpenter, R.3    Coen, E.S.4
  • 17
    • 0037470360 scopus 로고    scopus 로고
    • Genetic control of surface curvature
    • Nath U, Crawford BC, Carpenter R, Coen E. Genetic control of surface curvature. Science 2003, 299(5611):1404-1407.
    • (2003) Science , vol.299 , Issue.5611 , pp. 1404-1407
    • Nath, U.1    Crawford, B.C.2    Carpenter, R.3    Coen, E.4
  • 19
    • 76049118057 scopus 로고    scopus 로고
    • MiR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis
    • Nag A, King S, Jack T. miR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis. Proc Natl Acad Sci U S A 2009, 106(52):22534-22539.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , Issue.52 , pp. 22534-22539
    • Nag, A.1    King, S.2    Jack, T.3
  • 21
    • 70350128142 scopus 로고    scopus 로고
    • A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock (vol 325, pg 1481, 2009)
    • Pruneda-Paz JL. A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock (vol 325, pg 1481, 2009). Science 2009, 326(5951):366-366.
    • (2009) Science , vol.326 , Issue.5951 , pp. 366-366
    • Pruneda-Paz, J.L.1
  • 22
    • 34250675995 scopus 로고    scopus 로고
    • TCP transcription factors control the morphology of shoot lateral organs via negative regulation of the expression of boundary-specific genes in Arabidopsis
    • Koyama T, Furutani M, Tasaka M, Ohme-Takagi M. TCP transcription factors control the morphology of shoot lateral organs via negative regulation of the expression of boundary-specific genes in Arabidopsis. Plant Cell 2007, 19(2):473-484.
    • (2007) Plant Cell , vol.19 , Issue.2 , pp. 473-484
    • Koyama, T.1    Furutani, M.2    Tasaka, M.3    Ohme-Takagi, M.4
  • 23
    • 0031225050 scopus 로고    scopus 로고
    • PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene
    • Kosugi S, Ohashi Y. PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene. Plant Cell 1997, 9(9):1607-1619.
    • (1997) Plant Cell , vol.9 , Issue.9 , pp. 1607-1619
    • Kosugi, S.1    Ohashi, Y.2
  • 24
    • 77953199469 scopus 로고    scopus 로고
    • Identification of specific DNA binding residues in the TCP family of transcription factors in Arabidopsis
    • Aggarwal P, Das Gupta M, Joseph AP, Chatterjee N, Srinivasan N, Nath U. Identification of specific DNA binding residues in the TCP family of transcription factors in Arabidopsis. Plant Cell 2010, 22(4):1174-1189.
    • (2010) Plant Cell , vol.22 , Issue.4 , pp. 1174-1189
    • Aggarwal, P.1    Das Gupta, M.2    Joseph, A.P.3    Chatterjee, N.4    Srinivasan, N.5    Nath, U.6
  • 25
    • 0036106417 scopus 로고    scopus 로고
    • DNA binding and dimerization specificity and potential targets for the TCP protein family
    • Kosugi S, Ohashi Y. DNA binding and dimerization specificity and potential targets for the TCP protein family. Plant J 2002, 30(3):337-348.
    • (2002) Plant J , vol.30 , Issue.3 , pp. 337-348
    • Kosugi, S.1    Ohashi, Y.2
  • 26
    • 0037356816 scopus 로고    scopus 로고
    • Internal telomeric repeats and 'TCP domain' protein-binding sites co-operate to regulate gene expression in Arabidopsis thaliana cycling cells
    • Tremousaygue D, Garnier L, Bardet C, Dabos P, Herve C, Lescure B. Internal telomeric repeats and 'TCP domain' protein-binding sites co-operate to regulate gene expression in Arabidopsis thaliana cycling cells. Plant J 2003, 33(6):957-966.
    • (2003) Plant J , vol.33 , Issue.6 , pp. 957-966
    • Tremousaygue, D.1    Garnier, L.2    Bardet, C.3    Dabos, P.4    Herve, C.5    Lescure, B.6
  • 29
    • 33746513103 scopus 로고    scopus 로고
    • A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening
    • Manning K, Tor M, Poole M, Hong Y, Thompson AJ, King GJ, Giovannoni JJ, Seymour GB. A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening. Nat Genet 2006, 38(8):948-952.
    • (2006) Nat Genet , vol.38 , Issue.8 , pp. 948-952
    • Manning, K.1    Tor, M.2    Poole, M.3    Hong, Y.4    Thompson, A.J.5    King, G.J.6    Giovannoni, J.J.7    Seymour, G.B.8
  • 30
    • 78650079526 scopus 로고    scopus 로고
    • A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening
    • Chung MY, Vrebalov J, Alba R, Lee J, McQuinn R, Chung JD, Klein P, Giovannoni J. A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening. Plant J 2010, 64(6):936-947.
    • (2010) Plant J , vol.64 , Issue.6 , pp. 936-947
    • Chung, M.Y.1    Vrebalov, J.2    Alba, R.3    Lee, J.4    McQuinn, R.5    Chung, J.D.6    Klein, P.7    Giovannoni, J.8
  • 31
    • 0346095400 scopus 로고    scopus 로고
    • Evolution of the TCP gene family in Asteridae: cladistic and network approaches to understanding regulatory gene family diversification and its impact on morphological evolution
    • Reeves PA, Olmstead RG. Evolution of the TCP gene family in Asteridae: cladistic and network approaches to understanding regulatory gene family diversification and its impact on morphological evolution. Mol Biol Evol 2003, 20(12):1997-2009.
    • (2003) Mol Biol Evol , vol.20 , Issue.12 , pp. 1997-2009
    • Reeves, P.A.1    Olmstead, R.G.2
  • 32
    • 84876531652 scopus 로고    scopus 로고
    • PGDD: a database of gene and genome duplication in plants
    • Lee TH, Tang H, Wang X, Paterson AH. PGDD: a database of gene and genome duplication in plants. Nucleic Acids Res 2012, 41(D1):D1152-D1158.
    • (2012) Nucleic Acids Res , vol.41 , Issue.D1
    • Lee, T.H.1    Tang, H.2    Wang, X.3    Paterson, A.H.4
  • 33
    • 34347208355 scopus 로고    scopus 로고
    • Genome-wide comparative analysis and expression pattern of TCP gene families in Arabidopsis thaliana and Oryza sativa
    • Yao X, Ma H, Wang J, Zhang DB. Genome-wide comparative analysis and expression pattern of TCP gene families in Arabidopsis thaliana and Oryza sativa. J Integr Plant Biol 2007, 49(6):885-897.
    • (2007) J Integr Plant Biol , vol.49 , Issue.6 , pp. 885-897
    • Yao, X.1    Ma, H.2    Wang, J.3    Zhang, D.B.4
  • 36
    • 26244443432 scopus 로고    scopus 로고
    • Hormonal regulation of tomato fruit development: A molecular perspective
    • Srivastava A, Handa AK. Hormonal regulation of tomato fruit development: A molecular perspective. J Plant Growth Regul 2005, 24(2):67-82.
    • (2005) J Plant Growth Regul , vol.24 , Issue.2 , pp. 67-82
    • Srivastava, A.1    Handa, A.K.2
  • 38
    • 0002443854 scopus 로고
    • Ripening inhibitor: a gene with multiple effect on ripening
    • Robinson RW, Tomes ML. Ripening inhibitor: a gene with multiple effect on ripening. Tomato Genet Coop 1968, 18:36-37.
    • (1968) Tomato Genet Coop , vol.18 , pp. 36-37
    • Robinson, R.W.1    Tomes, M.L.2
  • 41
    • 79959595405 scopus 로고    scopus 로고
    • Speeding cis-trans regulation discovery by phylogenomic analyses coupled with screenings of an arrayed library of Arabidopsis transcription factors
    • Castrillo G, Turck F, Leveugle M, Lecharny A, Carbonero P, Coupland G, Paz-Ares J, Onate-Sanchez L. Speeding cis-trans regulation discovery by phylogenomic analyses coupled with screenings of an arrayed library of Arabidopsis transcription factors. PLoS One 2011, 6(6):e21524.
    • (2011) PLoS One , vol.6 , Issue.6
    • Castrillo, G.1    Turck, F.2    Leveugle, M.3    Lecharny, A.4    Carbonero, P.5    Coupland, G.6    Paz-Ares, J.7    Onate-Sanchez, L.8
  • 44
    • 0032005923 scopus 로고    scopus 로고
    • Isolation and characterization of two knotted-like homeobox genes from tomato
    • Janssen BJ, Williams A, Chen JJ, Mathern J, Hake S, Sinha N. Isolation and characterization of two knotted-like homeobox genes from tomato. Plant Mol Biol 1998, 36(3):417-425.
    • (1998) Plant Mol Biol , vol.36 , Issue.3 , pp. 417-425
    • Janssen, B.J.1    Williams, A.2    Chen, J.J.3    Mathern, J.4    Hake, S.5    Sinha, N.6
  • 46
    • 33847213131 scopus 로고    scopus 로고
    • Role of SVP in the control of flowering time by ambient temperature in Arabidopsis
    • Lee JH, Yoo SJ, Park SH, Hwang I, Lee JS, Ahn JH. Role of SVP in the control of flowering time by ambient temperature in Arabidopsis. Genes Dev 2007, 21(4):397-402.
    • (2007) Genes Dev , vol.21 , Issue.4 , pp. 397-402
    • Lee, J.H.1    Yoo, S.J.2    Park, S.H.3    Hwang, I.4    Lee, J.S.5    Ahn, J.H.6
  • 47
  • 48
    • 51249166384 scopus 로고
    • Microprep protocol for extraction of DNA from tomato and other herbaceous plants
    • Fulton TM, Chunwongse J, Tanksley SD. Microprep protocol for extraction of DNA from tomato and other herbaceous plants. Plant Mol Biol Rep 1995, 13(3):207-209.
    • (1995) Plant Mol Biol Rep , vol.13 , Issue.3 , pp. 207-209
    • Fulton, T.M.1    Chunwongse, J.2    Tanksley, S.D.3
  • 49
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32(5):1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 50
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011, 28(10):2731-2739.
    • (2011) Mol Biol Evol , vol.28 , Issue.10 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 51
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987, 4(4):406-425.
    • (1987) Mol Biol Evol , vol.4 , Issue.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 52
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2-ddCT method
    • Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2-ddCT method. Methods 2001, 25(4):402-408.
    • (2001) Methods , vol.25 , Issue.4 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 53
    • 0037435395 scopus 로고    scopus 로고
    • Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data
    • Ramakers C, Ruijter JM, Deprez RH, Moorman AF. Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci Lett 2003, 339(1):62-66.
    • (2003) Neurosci Lett , vol.339 , Issue.1 , pp. 62-66
    • Ramakers, C.1    Ruijter, J.M.2    Deprez, R.H.3    Moorman, A.F.4
  • 54
    • 0030455820 scopus 로고    scopus 로고
    • Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast
    • James P, Halladay J, Craig EA. Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast. Genetics 1996, 144(4):1425-1436.
    • (1996) Genetics , vol.144 , Issue.4 , pp. 1425-1436
    • James, P.1    Halladay, J.2    Craig, E.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.