메뉴 건너뛰기




Volumn 102, Issue 4, 2014, Pages 1008-1016

Prevalence of phylogenetic clustering at multiple scales in an African rain forest tree community

Author keywords

African rain forest; Clustering; Competition; Determinants of plant community diversity and structure; Overdispersion; Phylogenetic depth; Phylogenetic structure; Rain forest; Spatial scale; Trees

Indexed keywords

ASSEMBLY RULE; COEXISTENCE; COMMUNITY STRUCTURE; DISPERSION; INDIVIDUAL-BASED MODEL; INTERSPECIFIC COMPETITION; PHYLOGENETICS; PLANT COMMUNITY; RAINFOREST; SPATIAL ANALYSIS; SPECIES DIVERSITY; TURNOVER;

EID: 84903169512     PISSN: 00220477     EISSN: 13652745     Source Type: Journal    
DOI: 10.1111/1365-2745.12254     Document Type: Article
Times cited : (31)

References (57)
  • 1
  • 4
    • 79955092596 scopus 로고    scopus 로고
    • More closely related species are more ecologically similar in an experimental test
    • Burns, J.H. & Strauss, S.Y. (2011) More closely related species are more ecologically similar in an experimental test. Proceedings of the National Academy of Sciences, 108, 5302-5307.
    • (2011) Proceedings of the National Academy of Sciences , vol.108 , pp. 5302-5307
    • Burns, J.H.1    Strauss, S.Y.2
  • 5
    • 33749860704 scopus 로고    scopus 로고
    • Phylogenetic structure of floridian plant communities depends on taxonomic and spatial scale
    • Cavender-Bares, J., Keen, A. & Miles, B. (2006) Phylogenetic structure of floridian plant communities depends on taxonomic and spatial scale. Ecology, 87, S109-S122.
    • (2006) Ecology , vol.87
    • Cavender-Bares, J.1    Keen, A.2    Miles, B.3
  • 7
    • 0036802377 scopus 로고    scopus 로고
    • Litter breakdown and mineralization in a central African rain forest dominated by ectomycorrhizal trees
    • Chuyong, G.B., Newbery, D.M. & Songwe, N.C. (2002) Litter breakdown and mineralization in a central African rain forest dominated by ectomycorrhizal trees. Biogeochemistry, 61, 73-94.
    • (2002) Biogeochemistry , vol.61 , pp. 73-94
    • Chuyong, G.B.1    Newbery, D.M.2    Songwe, N.C.3
  • 8
    • 1542378972 scopus 로고    scopus 로고
    • Rainfall input, throughfall and stemflow of nutrients in a central African rain forest dominated by ectomycorrhizal trees
    • Chuyong, G.B., Newbery, D.M. & Songwe, N.C. (2004b) Rainfall input, throughfall and stemflow of nutrients in a central African rain forest dominated by ectomycorrhizal trees. Biogeochemistry, 67, 73-91.
    • (2004) Biogeochemistry , vol.67 , pp. 73-91
    • Chuyong, G.B.1    Newbery, D.M.2    Songwe, N.C.3
  • 10
    • 79960292971 scopus 로고    scopus 로고
    • Habitat specificity and diversity of tree species in an African wet tropical forest
    • Chuyong, G.B., Kenfack, D., Harms, K., Thomas, D., Condit, R. & Comita, L. (2011) Habitat specificity and diversity of tree species in an African wet tropical forest. Plant Ecology, 212, 1363-1374.
    • (2011) Plant Ecology , vol.212 , pp. 1363-1374
    • Chuyong, G.B.1    Kenfack, D.2    Harms, K.3    Thomas, D.4    Condit, R.5    Comita, L.6
  • 11
    • 0003128284 scopus 로고
    • On the roles of natural enemies in preventing competitive exclusion in some marine animals and in rain forest trees
    • eds P.J. den Boer & G.R. Gradwell). Center for Agricultural Publishing and Documentation, Wageningen, The Netherlands.
    • Connell, J.H. (1971) On the roles of natural enemies in preventing competitive exclusion in some marine animals and in rain forest trees. Dynamics of populations (eds P.J. den Boer & G.R. Gradwell ), pp. 298-312. Center for Agricultural Publishing and Documentation, Wageningen, The Netherlands.
    • (1971) Dynamics of populations , pp. 298-312
    • Connell, J.H.1
  • 13
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond, A.J. & Rambaut, A. (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214.
    • (2007) BMC Evolutionary Biology , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 14
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32, 1792-1797.
    • (2004) Nucleic Acids Research , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 16
    • 72249101990 scopus 로고    scopus 로고
    • Shifts in species and phylogenetic diversity between sapling and tree communities indicate negative density dependence in a lowland rain forest
    • Gonzalez, M.A., Roger, A., Courtois, E.A., Jabot, F., Norden, N., Paine, C.E.T., Baraloto, C., Thebaud, C. & Chave, J. (2010) Shifts in species and phylogenetic diversity between sapling and tree communities indicate negative density dependence in a lowland rain forest. Journal of Ecology, 98, 137-146.
    • (2010) Journal of Ecology , vol.98 , pp. 137-146
    • Gonzalez, M.A.1    Roger, A.2    Courtois, E.A.3    Jabot, F.4    Norden, N.5    Paine, C.E.T.6    Baraloto, C.7    Thebaud, C.8    Chave, J.9
  • 17
    • 55649096185 scopus 로고    scopus 로고
    • Phylogenetic beta diversity: linking ecological and evolutionary processes across space in time
    • Graham, C.H. & Fine, P.V.A. (2008) Phylogenetic beta diversity: linking ecological and evolutionary processes across space in time. Ecology Letters, 11, 1265-1277.
    • (2008) Ecology Letters , vol.11 , pp. 1265-1277
    • Graham, C.H.1    Fine, P.V.A.2
  • 18
    • 49649122320 scopus 로고    scopus 로고
    • Testing the spatial phylogenetic structure of local communities: statistical performances of different null models and test statistics on a locally neutral community
    • Hardy, O.J. (2008) Testing the spatial phylogenetic structure of local communities: statistical performances of different null models and test statistics on a locally neutral community. Journal of Ecology, 96, 914-926.
    • (2008) Journal of Ecology , vol.96 , pp. 914-926
    • Hardy, O.J.1
  • 19
    • 84903126641 scopus 로고    scopus 로고
    • SPACoDi 0.10: A Program for Spatial & Phylogenetic Analysis of Community Diversity
    • Hardy, O.J. (2010) SPACoDi 0.10: A Program for Spatial & Phylogenetic Analysis of Community Diversity. http://ebe.ulb.ac.be/ebe/SPACoDi.html
    • (2010)
    • Hardy, O.J.1
  • 20
    • 34247226174 scopus 로고    scopus 로고
    • Characterizing the phylogenetic structure of communities by an additive partitioning of phylogenetic diversity
    • Hardy, O.J. & Senterre, B. (2007) Characterizing the phylogenetic structure of communities by an additive partitioning of phylogenetic diversity. Journal of Ecology, 95, 493-506.
    • (2007) Journal of Ecology , vol.95 , pp. 493-506
    • Hardy, O.J.1    Senterre, B.2
  • 21
    • 84859712943 scopus 로고    scopus 로고
    • Phylogenetic turnover in tropical tree communities: impact of environmental filtering, biogeography and mesoclimate niche conservatism
    • Hardy, O.J., Couteron, P., Munoz, F., Ramesh, B.R. & Pélissier, R. (2012) Phylogenetic turnover in tropical tree communities: impact of environmental filtering, biogeography and mesoclimate niche conservatism. Global Ecology and Biogeography, 21, 1007-1016.
    • (2012) Global Ecology and Biogeography , vol.21 , pp. 1007-1016
    • Hardy, O.J.1    Couteron, P.2    Munoz, F.3    Ramesh, B.R.4    Pélissier, R.5
  • 23
    • 0000344538 scopus 로고
    • Herbivores and number of tree species in tropical forests
    • Janzen, D.H. (1970) Herbivores and number of tree species in tropical forests. American Naturalist, 104, 501-528.
    • (1970) American Naturalist , vol.104 , pp. 501-528
    • Janzen, D.H.1
  • 24
    • 33749839201 scopus 로고    scopus 로고
    • The phylogenetic structure of a neotropical forest tree community
    • Kembel, S.W. & Hubbell, S.P. (2006) The phylogenetic structure of a neotropical forest tree community. Ecology, 87, S86-S99.
    • (2006) Ecology , vol.87
    • Kembel, S.W.1    Hubbell, S.P.2
  • 26
    • 54949111699 scopus 로고    scopus 로고
    • Functional traits and niche-based tree community assembly in an amazonian forest
    • Kraft, N.J.B., Valencia, R. & Ackerly, D.D. (2008) Functional traits and niche-based tree community assembly in an amazonian forest. Science, 322, 580-582.
    • (2008) Science , vol.322 , pp. 580-582
    • Kraft, N.J.B.1    Valencia, R.2    Ackerly, D.D.3
  • 28
    • 84904106173 scopus 로고    scopus 로고
    • Does relatedness matter? Phylogenetic density dependent survival of seedlings in a tropical forest
    • Lebrija-Trejos, E., Wright, S.J., Hernández, A. & Reich, P.B. (2013) Does relatedness matter? Phylogenetic density dependent survival of seedlings in a tropical forest. Ecology, http://dx.doi.org/10.1890/13-0623.1.
    • (2013) Ecology
    • Lebrija-Trejos, E.1    Wright, S.J.2    Hernández, A.3    Reich, P.B.4
  • 29
    • 84855425506 scopus 로고    scopus 로고
    • Experimental evidence for a phylogenetic Janzen-Connell effect in a subtropical forest
    • Liu, X., Liang, M., Etienne, R.S., Wang, Y., Staehelin, C. & Yu, S. (2012) Experimental evidence for a phylogenetic Janzen-Connell effect in a subtropical forest. Ecology letters, 15, 111-118.
    • (2012) Ecology letters , vol.15 , pp. 111-118
    • Liu, X.1    Liang, M.2    Etienne, R.S.3    Wang, Y.4    Staehelin, C.5    Yu, S.6
  • 31
    • 0002641288 scopus 로고    scopus 로고
    • Phenology and dynamics of an african rainforest at korup, cameroon
    • (eds D.M. Newbery, H.H.T. Prins & N.D. Brown). Blackwell Science, London.
    • Newbery, D.M., Songwe, N.C. & Chuyong, G.B. (1998) Phenology and dynamics of an african rainforest at korup, cameroon. Dynamics of Tropical Communities (eds D.M. Newbery, H.H.T. Prins & N.D. Brown ), pp. 267-308. Blackwell Science, London.
    • (1998) Dynamics of Tropical Communities , pp. 267-308
    • Newbery, D.M.1    Songwe, N.C.2    Chuyong, G.B.3
  • 32
    • 82455162421 scopus 로고    scopus 로고
    • Phylogenetic density dependence and environmental filtering predict seedling mortality in a tropical forest
    • Paine, C.E.T., Norden, N., Chave, J., Forget, P.-M., Fortunel, C., Dexter, K.G. & Baraloto, C. (2012) Phylogenetic density dependence and environmental filtering predict seedling mortality in a tropical forest. Ecology Letters, 15, 34-41.
    • (2012) Ecology Letters , vol.15 , pp. 34-41
    • Paine, C.E.T.1    Norden, N.2    Chave, J.3    Forget, P.-M.4    Fortunel, C.5    Dexter, K.G.6    Baraloto, C.7
  • 33
    • 70349092758 scopus 로고    scopus 로고
    • The impact of ecological differentiation and dispersal limitation on species turnover and phylogenetic structure of inselberg's plant communities
    • Parmentier, I. & Hardy, O.J. (2009) The impact of ecological differentiation and dispersal limitation on species turnover and phylogenetic structure of inselberg's plant communities. Ecography, 32, 613-622.
    • (2009) Ecography , vol.32 , pp. 613-622
    • Parmentier, I.1    Hardy, O.J.2
  • 35
    • 79959291352 scopus 로고    scopus 로고
    • Exploring tree-habitat associations in a Chinese subtropical forest plot using a molecular phylogeny generated from DNA barcode loci
    • Pei, N., Lian, J.-Y., Erickson, D.L., Swenson, N.G., Kress, W.J., Ye, W.-H. & Ge, X.-J. (2011) Exploring tree-habitat associations in a Chinese subtropical forest plot using a molecular phylogeny generated from DNA barcode loci. PLoS ONE, 6, e21273.
    • (2011) PLoS ONE , vol.6
    • Pei, N.1    Lian, J.-Y.2    Erickson, D.L.3    Swenson, N.G.4    Kress, W.J.5    Ye, W.-H.6    Ge, X.-J.7
  • 36
    • 84863304598 scopus 로고    scopus 로고
    • R Core Development Team. R Foundation for Statistical Computing, Vienna, Austria.
    • R Core Development Team (2013) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. URLhttp://www.R-project.org/.
    • (2013) R: A Language and Environment for Statistical Computing
  • 37
    • 34248149943 scopus 로고    scopus 로고
    • BOLD: the barcode of life data system
    • Ratnasingham, S. & Hebert, P.D. (2007) BOLD: the barcode of life data system (http://www.barcodinglife.org). Molecular Ecology Notes, 7, 355-364.
    • (2007) Molecular Ecology Notes , vol.7 , pp. 355-364
    • Ratnasingham, S.1    Hebert, P.D.2
  • 38
    • 79955423707 scopus 로고    scopus 로고
    • Properties of similarity indices under niche-based and dispersal-based processes in communities
    • Réjou-Méchain, M. & Hardy, O.J. (2011) Properties of similarity indices under niche-based and dispersal-based processes in communities. The American Naturalist, 177, 589-604.
    • (2011) The American Naturalist , vol.177 , pp. 589-604
    • Réjou-Méchain, M.1    Hardy, O.J.2
  • 39
    • 0742267687 scopus 로고    scopus 로고
    • A comprehensive framework for global patterns in biodiversity
    • Ricklefs, R.E. (2004) A comprehensive framework for global patterns in biodiversity. Ecology Letters, 7, 1-15.
    • (2004) Ecology Letters , vol.7 , pp. 1-15
    • Ricklefs, R.E.1
  • 40
    • 0037314098 scopus 로고    scopus 로고
    • r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
    • Sanderson, M.J. (2003) r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics, 19, 301-302.
    • (2003) Bioinformatics , vol.19 , pp. 301-302
    • Sanderson, M.J.1
  • 41
    • 84889639081 scopus 로고    scopus 로고
    • Quantifying spatial phylogenetic structures of fully stem-mapped plant communities
    • Shen, G., Wiegand, T., Mi, X. & He, F. (2013) Quantifying spatial phylogenetic structures of fully stem-mapped plant communities. Methods in Ecology and Evolution, 4, 1132-1141.
    • (2013) Methods in Ecology and Evolution , vol.4 , pp. 1132-1141
    • Shen, G.1    Wiegand, T.2    Mi, X.3    He, F.4
  • 42
    • 0000322998 scopus 로고
    • Pattern and biological microsite effects in two shrub communities, southern California
    • Shmida, A. & Whittaker, R.H. (1981) Pattern and biological microsite effects in two shrub communities, southern California. Ecology, 62, 234-251.
    • (1981) Ecology , vol.62 , pp. 234-251
    • Shmida, A.1    Whittaker, R.H.2
  • 43
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the RAxML Web servers
    • Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML Web servers. Systematic biology, 57, 758-771.
    • (2008) Systematic biology , vol.57 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 44
    • 84875364030 scopus 로고    scopus 로고
    • The assembly of tropical tree communities-the advances and shortcomings of phylogenetic and functional trait analyses
    • Swenson, N.G. (2013) The assembly of tropical tree communities-the advances and shortcomings of phylogenetic and functional trait analyses. Ecography, 36, 264-276.
    • (2013) Ecography , vol.36 , pp. 264-276
    • Swenson, N.G.1
  • 45
    • 68149136776 scopus 로고    scopus 로고
    • Opposing assembly mechanisms in a Neotropical dry forest: implications for phylogenetic and functional community ecology
    • Swenson, N.G. & Enquist, B.J. (2009) Opposing assembly mechanisms in a Neotropical dry forest: implications for phylogenetic and functional community ecology. Ecology, 90, 2161-2170.
    • (2009) Ecology , vol.90 , pp. 2161-2170
    • Swenson, N.G.1    Enquist, B.J.2
  • 46
    • 33845353628 scopus 로고    scopus 로고
    • The problem and promise of scale dependency in community phylogenetics
    • Swenson, N.G., Enquist, B.J., Pither, J., Thompson, J. & Zimmerman, J.K. (2006) The problem and promise of scale dependency in community phylogenetics. Ecology, 87, 2418-2424.
    • (2006) Ecology , vol.87 , pp. 2418-2424
    • Swenson, N.G.1    Enquist, B.J.2    Pither, J.3    Thompson, J.4    Zimmerman, J.K.5
  • 47
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular biology and evolution, 28, 2731-2739.
    • (2011) Molecular biology and evolution , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 49
    • 1842534535 scopus 로고    scopus 로고
    • A spatially explicit model of sapling growth in a tropical forest: does the identity of neighbours matter?
    • Uriarte, M., Condit, R., Canham, C.D. & Hubbell, S.P. (2004) A spatially explicit model of sapling growth in a tropical forest: does the identity of neighbours matter? Journal of Ecology, 92, 348-360.
    • (2004) Journal of Ecology , vol.92 , pp. 348-360
    • Uriarte, M.1    Condit, R.2    Canham, C.D.3    Hubbell, S.P.4
  • 51
    • 58849095783 scopus 로고    scopus 로고
    • Emerging patterns in the comparative analysis of phylogenetic community structure
    • Vamosi, S.M., Heard, S.B., Vamosi, J.C. & Webb, C.O. (2009) Emerging patterns in the comparative analysis of phylogenetic community structure. Molecular Ecology, 18, 572-592.
    • (2009) Molecular Ecology , vol.18 , pp. 572-592
    • Vamosi, S.M.1    Heard, S.B.2    Vamosi, J.C.3    Webb, C.O.4
  • 52
    • 51749095104 scopus 로고    scopus 로고
    • Phylocom: software for the analysis of phylogenetic community structure and trait evolution
    • Webb, C.O., Ackerly, D.D. & Kembel, S.W. (2008) Phylocom: software for the analysis of phylogenetic community structure and trait evolution. Bioinformatics, 24, 2098-2100.
    • (2008) Bioinformatics , vol.24 , pp. 2098-2100
    • Webb, C.O.1    Ackerly, D.D.2    Kembel, S.W.3
  • 53
    • 14844350168 scopus 로고    scopus 로고
    • Phylomatic: tree assembly for applied phylogenetics
    • Webb, C.O. & Donoghue, M.J. (2005) Phylomatic: tree assembly for applied phylogenetics. Molecular Ecology Notes, 5, 181-183.
    • (2005) Molecular Ecology Notes , vol.5 , pp. 181-183
    • Webb, C.O.1    Donoghue, M.J.2
  • 54
    • 33749817688 scopus 로고    scopus 로고
    • Phylodiversity-dependent seedling mortality, size structure, and disease in a Bornean rain forest
    • Webb, C.O., Gilbert, G.S. & Donoghue, M.J. (2006) Phylodiversity-dependent seedling mortality, size structure, and disease in a Bornean rain forest. Ecology, 87, S123-S131.
    • (2006) Ecology , vol.87
    • Webb, C.O.1    Gilbert, G.S.2    Donoghue, M.J.3
  • 57
    • 0036941527 scopus 로고    scopus 로고
    • Plant diversity in tropical forests: a review of mechanisms of species coexistence
    • Wright, S.J. (2002) Plant diversity in tropical forests: a review of mechanisms of species coexistence. Oecologia, 130, 1-14.
    • (2002) Oecologia , vol.130 , pp. 1-14
    • Wright, S.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.