Explaining the decrease in the genetic diversity of wheat in France over the 20th century

Agriculture, Ecosystems and Environment

Volumn 195, Issue , 2014, Pages 183-192

  Bonnin, Isabelle ^a   Bonneuil, Christophe ^b   Goffaux, Robin ^c   Montalent, Pierre ^a   Goldringer, Isabelle ^a  

^a INRA Institut National de la Recherche Agronomique   (France)

^b MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

^c Domain du Petit Arbois   (France)

Author keywords

Biodiversity monitoring; Genetic diversity evolution; Landscape genetics

Indexed keywords

AGRICULTURAL LAND; CLIMATE CONDITIONS; CROP PRODUCTION; CULTIVAR; GENETIC VARIATION; PLANT BREEDING; POPULATION GENETICS; SPECIES DIVERSITY; TWENTIETH CENTURY; VULNERABILITY; WHEAT;

FRANCE;

EID: 84903157624     PISSN: 01678809     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.agee.2014.06.003     Document Type: Article

References (67)

1. Bailey J.K., Schweitzer J.A., Ubeda F., Koricheva J., LeRoy C.J., Madritch M.D., Rehill B.J., Bangert R.K., Fischer D.G., Allan G.J., Whitham T.G. From genes to ecosystems: a synthesis of the effects of plant genetic factors across levels of organization. Phil. Trans. R. Soc. 2009, 364:1607-1616.
2. Bonneuil C., Thomas F. Gènes, Pouvoirs et Profits 2009, ed Quae-FPH, Paris.
3. Bonneuil C., Thomas F. Purifying landscapes: the vichy regime and the genetic modernization of France. Hist. Stud. Nat. Sci. 2010, 40:532-568.
4. Bonneuil C., Goffaux R., Bonnin I., Montalent P., Hamon C., Balfourier F., Goldringer I. A new integrative indicator to assess crop genetic diversity. Ecol. Indic. 2012, 23:280-289.
5. Borner A., Khlestkina E.K., Chebotar S., Nagel M., Rehman-Arif M.A., Neumann K., Kobiljski B., Lohwasser U., Röder M.S. Molecular markers in management of ex situ PGR - a case study. J. Biosci. 2012, 37:871-877.
6. Brétignière L. Essai sur la Répartition des Variétés de Blés Cultivés en France 1912, ed Renouard, Paris.
7. Brisson N., Gate P., Gouache D., Charmet G., Oury F., Huard F. Why are wheat yields stagnating in Europe ? A comprehensive data analysis for France. Field Crop Res. 2010, 119:201-212.
8. "Catalogue des Espèces et Variétés cultivées en France à la date du 15 septembre 1933", Journal Officiel du 9 Nov. 1933.
9. CDB SBSTTA 10 Indicators for assessing progress towards the 2010 target: trends in genetic diversity of domesticated animals, cultivated plants, and fish species of major socio-economic importance. Note by the Executive Secretary. Tenth Meeting 2005, 10.
10. Chao S., Zhang W., Dubcovsky J., Sorrells M. Evaluation of genetic diversity and genome-wide linkage disequilibrium among U.S. wheat (Triticumaestivum L.) germplasm representing different market classes. Crop Sci. 2007, 47:1018-1030.
11. Chateil C., Goldringer I., Tarallo L., Kerbiriou C., Le Viol I., Ponge J.F., Salmon S., Gachet S., Porcher E. Crop genetic diversity benefits farmland biodiversity in cultivated fields. Agric. Ecosyst. Environ. 2013, 171:25-32.
12. Cheatham M.R., Rouse M.N., Esker P.D., Ignacio S., Pradel W., Raymundo R., Sparks A.H., Forbes G.A., Gordon T.R., Garrett K.A. Beyond yield: plant disease in the context of ecosystem services. Phytopathology 2009, 99:1228-1236.
13. Christiansen M.J., Anderson S.B., Ortiz R. Diversity changes in an intensively bred wheat germplasm during the 20th century. Mol Breed 2002, 9:1-11.
14. Courtois B., Frouin J., Greco R., Bruschi G., Droc G., Hamelin C., Ruiz M., Clément G., Evrard J.C., van Coppenole S., Katsantonis D., Oliveira M., Negrão S., Matos C., Cavigiolo S., Lupotto E., Piffanelli P., Ahmadi N. Genetic diversity and population structure in a European collection of rice. Crop Sci. 2012, 52:1663-1675.
15. Dengler J. A flexible multi-scale approach for standardised recording of plant species richness patterns. Ecol. Indic. 2009, 9:1169-1178.
16. De Vallavieille-Pope C. Management of disease resistance diversity of cultivars of a species in single fields: controlling epidemics. C. R. Biol. 2004, 327:611-620.
17. Díaz S., Cabido M. Vive la différence: plant functional diversity matters to cosystem processes. Trend Ecol. Evol. 2001, 11:646-655.
18. Diederichsen A., Raney J.P. Pure-lining of flax (Linumusitatissimum L.) genebank accessions for efficiently exploiting and assessing seed character diversity. Euphytica 2008, 164:255-273.
19. Donini P., Law J.R., Koebner R.M.D., Reeves J.C., et Cooke R.J. Temporal trends in the diversity of UK wheat. Theor. Appl. Genet. 2000, 100:912-917.
20. Duffy K.J. Identifying sighting clusters of endangered taxa with historical records. Conserv. Biol. 2011, 2:392-399.
21. Dumbrell A.J., Clarke E.J., Frost G.A., Randell T.E., Pitchford J.W., Hill J.K. Estimated changes in species diversity following habitat disturbance are dependent on spatial scale: theoretical and empirical evidence. J. Appl. Ecol. 2008, 45:1469-1477.
22. Filippi M., Frey O., Torre A. The modalities of territorial embeddedness of French cooperative groups. Territorial Governance, Local Development, Rural Areas, and Agrofood Systems 2011, 278. Springer Verlag, New York, Heidelberg. A. Torre, J.B. Traversac (Eds.).
23. Fu Y.-B., Peterson G.W., Richards K.W., Somers D., DePauw R.M., et Clarke J.C. Allelic reduction and genetic shift in the Canadian hard red spring wheat germplasm released from 1845 to 2004. Theor. Appl. Genet. 2005, 110:1505-1516.
24. Fu Y.-B., Peterson G.W., Yu J.-K., Gao L., Jia J., et Richards K.W. Impact of plant breeding on genetic diversity of the Canadian hard red spring wheat germplasm as revealed by EST-derived SSR markers. Theor. Appl. Genet. 2006, 112:1239-1247.
25. Fu Y.-B., Somers D.J. Genome-wide reduction of genetic diversity in wheat breeding. Crop Sci. 2009, vol. 49:161-168.
26. Garola C.V. Céréales: Blé, Seigle, Avoine, Orge, Sarrasin, Maïs, Millet, 2d 1909, ed J.-B. Baillière et fils, Paris.
27. Goffaux R., Goldringer I., Bonneuil C., Montalent P., Bonnin I. Quels Indicateurs Pour Suivre la Diversité des Plantes Cultivées ? Le cas du Blé Tendre en France Depuis un Siècle 2011, Ed. Fondation de Recherche pour la Biodiversité, Paris.
28. Hailu F., Johansson E., Merker A. Patterns of phenotypic diversity for phenologic and qualitative traits in Ethiopian tetraploid wheat germplasm. Genet. Resour. Crop Evol. 2010, 57:781-790.
29. Hajjar R., Jarvis D.I., Gemmill-Herren B. The utility of crop genetic diversity in maintaining ecosystem services. Agric. Ecosyst. Environ. 2008, 123:261-270.
30. Hao C., Wang L., Zhang X., You G., Dong Y., Jia J., Liu X., Shang X., Liu S., et Cao Y. Genetic diversity in Chinese modern wheat varieties revealed by microsatellite markers. Sci. China Ser. C: Life Sci. 2006, 49(3):218-226.
31. Huang C., Sun Z., Wang H., Luo Y., Ma Z. Effects of wheat cultivar mixtures on stripe rust: a meta-analysis on field trials. Crop Prot. 2012, 33:52-58.
32. Jensen H.R., Dreiseitl A., Sadiki M., Schoen D.J. The red queen and the seed bank: pathogen resistance of ex situ and in situ conserved barley. Evol. Appl. 2012, 5:353-367.
33. Jombart T. Adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics 2008, 24:1403-1405.
34. Jombart T., Devillard S., Balloux F. Discrimant analysis of principal components: a new method for the analysis of genetically structured populations. BMC Genet. 2010, 11:94.
35. Jost L. Entropy and diversity. Oikos 2006, 113:363-375.
36. Kallimanis A.S., Halley J.M., Vokou D., Sgardelis S.P. The scale of analysis determines the spatial pattern of woody species diversity in the Mediterranean environment. Plant Ecol. 2008, 196:143-151.
37. Kiaer L.P., Skovgaard I.M., Ostergard H. Grain yield increase in cereal variety mixtures: a meta-analysis of field trials. Field Crop Res. 2009, 114:361-373.
38. Le Clerc V., Cadot V., Canadas M., Boulineau F., Lallemand J., Guerin D. Indicators to assess temporal genetic diversity in the French catalogue: no losses for maize and peas. Theor. Appl. Genet. 2006, 110:294-302.
39. Lee C., Abdool A., Huang C.H. PCA based population structure inference with generic clustering algorithms. BMC Bioinfo. 2009, 10:S1-S73.
40. Liu N., Zhao H. A non-parametric approach to population structure inference using multilocus genotypes. Hum. Genomics 2006, 2:353-364.
41. Marchi C., Andersen L.W., Damgaard C., Olsen K., Jensen T.S., Loeschcke V. Gene flow and population structure of a common agricultural wild species (Microtus agrestis) under different land management regimes. Heredity 2013, 111:486-494.
42. Martynov S.P., Dobrotvorskaya T.V., Pukhalskiy V.A. Dynamics of genetic diversity in winter common wheat Triticum aestivum L. cultivars revealed in Russia from 1929 to 2005. Rus. J. Genet. 2006, 10:1137-1147.
43. Mulumba J.W., Nankya R., Adokorach J., Kiwuka C., Fadda C., De Santis P., Jarvis D.I. A risk-minimizing argument for traditional crop varietal diversity use to reduce pest and disease damage in agricultural ecosystems of Uganda. Agric. Ecosyst. Environ. 2012, 157:70-86.
44. Nazareno A.G., Alzate-Marin A.L., Pereira R.A.S. Dioecy, more than monoecy, affects plant spatial genetic structure: the case study of Ficus. Ecol. Evol. 2013, 3:3495-3508.
45. Nei M. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. U.S.A. 1973, 70:3321-3323.
46. Ninkovic V., Al Abassi S., Ahmed E., Glinwood R., Pettersson J. Effect of within-species plant genotype mixing on habitat preference of a polyphagous insect predator. Oecologia 2011, 166:391-400.
47. OECD Environmental Indicators: Towards Sustainable Development 2001, OECD Publications, Paris.
48. Olden J.D., Le Roy Poff N., Douglas M.R., Douglas M.E., Fausch K.D. Ecological and evolutionary consequences of biotic homogenization. Trends Ecol. Evol. 2004, 19:18-24.
49. Ostergard H., Finckh M.R., Fontaine L., Goldringer I., Hoad S.P., Kristensen K., van Bueren E.T.L., Mascher F., Munk L., Wolfe M.S. Time for a shift in crop production: embracing complexity through diversity at all levels. J. Sci. Food Agric. 2009, 89:1439-1445.
50. Ram S., Jain N., Dawar V., Singh R.P., et Shoran J. Analyses of acid-PAGE gliadin pattern of Indian wheats (Triticum aestivum L.) representing different environments and periods. Crop Breed. Genet. Cytol. Crop Sci. 2005, 45:1256-1263.
51. Reif J.C., Zhang P., Dreisigacker S., Warburton M.L., van Ginkel M., Hoisington D., Bohn M., Melchinger A.E. Wheat genetic diversity trends during domestication and breeding. Theor. Appl. Genet. 2005, 110:859-864.
52. Roussel V., Koenig J., Beckert M., Balfourier F. Molecular diversity in French bread wheat accessions related to temporal trends and breeding programmes. Theor. Appl. Genet. 2004, 108:920-930.
53. Roussel V., Leisova L., Exbrayat F., Stehno Z., Balfourier F. SSR allelic diversity changes in 480 European bread wheat varieties released from 1840 to 2000. Theor. Appl. Genet. 2005, 111:162-170.
54. SEBI (Streamlining European Biodiversity Indicators), Assessing Biodiversity in Europe - the 2010 Report. EEA Report No. 5/2010 2010, European Environment Agency, Copenhagen.
55. Serpolay E., Dawson J.C., Chable V., Lammerts Van Bueren E.T., Osman A., Pino S., Silveri D., Goldringer I. Diversity of different farmer and modern wheat varieties cultivated in contrasting organic farming conditions in western Europe and implications for European seed and variety legislation. Org. Agric. 2011, 1:127-145.
56. Smart S.M., Thompson K., Marrs R.H., Le Duc M.G., Maskell L.C., Firbank L.G. Biotic homogenization and changes in species diversity across human-modified ecosystems. Proc. R. Soc. 2006, 273:2659-2665.
57. Soengas P., Cartea E., Leme M., Velasco P. Effect of regeneration procedures on the genetic integrity of Brassica oleraceaaccessions. Mol. Breed. 2009, 23:389-395.
58. Spataro G., Tiranti B., Arcaleni P., Bellucci E., Attene G., Papa R., Spagnoletti Zeuli P., Negri V. Genetic diversity and structure of a worldwide collection of Phaseoluscoccineus L. Theor. Appl. Genet. 2011, 122:1281-1291.
59. Srinivasan C.S., Thirtle C., et Palladino P. Winter wheat in England and Wales, 1923-1995: what do indices of genetic diversity reveal?. Plant Genet. Resour. 2003, 1:43-57.
60. Tian Q.Z., Zhou R.H., Jia J.Z. Genetic diversity trend of common wheat (Triticumaestivum L.) in China revealed with AFLP markers. Genet. Res. Crop. Evol. 2005, 52:325-331.
61. Tooker J.F., Frank S.D. Genotypically diverse cultivar mixtures for insect pest management and increased crop yields. J. Appl. Ecol. 2012, 49:974-985.
62. White J., Law J.R., MacKay I., Chalmers K.J., Smith J.S.C., Kilian A., et Powell W. The genetic diversity of UK, US and Australian cultivars of Triticum aestivum measured by DArT markers and considered by genome. Theor. Appl. Genet. 2008, 116:439-453.
63. Whitham T.G., Bailey J.K., Schweitzer J.A., Shuster S.M., Bangert R.K., LeRoy C.J., Lonsdorf E.V., Allan G.J., DiFazio S.P., Potts B.M., Fischer D.G., Gehring C.A., Lindroth R.L., Marks J.C., Hart S.C., Wimp G.M., Wooley S.C. A framework for community and ecosystem genetics: from genes to ecosystems. Nature 2006, 7:510-523.
64. Whittaker R. Evolution and measurement of species diversity. Taxon 1972, 21:213-251.
65. Wimp G.M., Young W.P., Woolbright S.A., Martinsen G.D., Keim P., Whitham T.G. Conserving plant genetic diversity for dependant animal communities. Ecol. Lett. 2004, 7:776-780.
66. Ye Q., Tang F., Wei N., Yao X. Molecular and quantitative trait variation within and among small fragmented populations of the endangered plant species Psilopeganum sinense. Ann. Bot. 2014, 113:79-86.
67. Zhu Y.Y., Chen H., Fan J., Wang Y., Li Y., Chen J., Fan J. Genetic diversity and disease control in rice. Nature 2000, 406:718-722.