-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol. 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
45549100129
-
Reconstructing evolution: Gene transfer from plastids to the nucleus
-
Bock R, Timmis JN. 2008. Reconstructing evolution: gene transfer from plastids to the nucleus. Bioessays 30: 556-566.
-
(2008)
Bioessays
, vol.30
, pp. 556-566
-
-
Bock, R.1
Timmis, J.N.2
-
3
-
-
0024966806
-
Nuclear transcriptional activity of the tobacco plastid psbA promoter
-
Cornelissen M, Vandewiele M. 1989. Nuclear transcriptional activity of the tobacco plastid psbA promoter. Nucleic Acids Res. 17: 19-29.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 19-29
-
-
Cornelissen, M.1
Vandewiele, M.2
-
6
-
-
0344089184
-
A role of the -35 element in the initiation of transcription at psbA promoter in tobacco plastids
-
Hayashi K, et al. 2003. A role of the -35 element in the initiation of transcription at psbA promoter in tobacco plastids. Plant Cell Physiol. 44: 334-341.
-
(2003)
Plant Cell Physiol
, vol.44
, pp. 334-341
-
-
Hayashi, K.1
-
7
-
-
33749406106
-
Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters
-
Hogan GJ, Lee CK, Lieb JD. 2006. Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters. PLoS Genet. 2:e158.
-
(2006)
PLoS Genet
, vol.2
-
-
Hogan, G.J.1
Lee, C.K.2
Lieb, J.D.3
-
8
-
-
0242669385
-
Direct measurement of the transfer rate of chloroplast DNA into the nucleus
-
Huang CY, Ayliffe MA, Timmis JN. 2003. Direct measurement of the transfer rate of chloroplast DNA into the nucleus. Nature 422: 72-76.
-
(2003)
Nature
, vol.422
, pp. 72-76
-
-
Huang, C.Y.1
Ayliffe, M.A.2
Timmis, J.N.3
-
9
-
-
34848909389
-
Nucleosome and transcription activator antagonism at human beta-globin locus control region DNase i hypersensitive sites
-
Kim A, Song SH, Brand M, Dean A. 2007. Nucleosome and transcription activator antagonism at human beta-globin locus control region DNase I hypersensitive sites. Nucleic Acids Res. 35: 5831-5838.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 5831-5838
-
-
Kim, A.1
Song, S.H.2
Brand, M.3
Dean, A.4
-
10
-
-
84883368195
-
Software for computing and annotating genomic ranges
-
Lawrence M, et al. 2013. Software for computing and annotating genomic ranges. PLoS Comput Biol. 9:e1003118.
-
(2013)
PLoS Comput Biol
, vol.9
-
-
Lawrence, M.1
-
11
-
-
79957831775
-
The origin and characterization of new nuclear genes originating from a cytoplasmic organellar genome
-
Lloyd AH, Timmis JN. 2011. The origin and characterization of new nuclear genes originating from a cytoplasmic organellar genome. Mol Biol Evol. 28: 2019-2028.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2019-2028
-
-
Lloyd, A.H.1
Timmis, J.N.2
-
12
-
-
36549008558
-
Nuclear insertions of organellar DNA can create novel patches of functional exon sequences
-
Noutsos C, Kleine T, Armbruster U, DalCorso G, Leister D. 2007. Nuclear insertions of organellar DNA can create novel patches of functional exon sequences. Trends Genet. 23: 597-601.
-
(2007)
Trends Genet
, vol.23
, pp. 597-601
-
-
Noutsos, C.1
Kleine, T.2
Armbruster, U.3
Dalcorso, G.4
Leister, D.5
-
13
-
-
78049460068
-
Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis
-
Pecinka A, et al. 2010. Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis. Plant Cell 22: 3118-3129.
-
(2010)
Plant Cell
, vol.22
, pp. 3118-3129
-
-
Pecinka, A.1
-
14
-
-
84863304598
-
-
R Development Core Team. Vienna (Austria): R Foundation for Statistical Computing
-
R Development Core Team. 2010. R: a language and environment for statistical computing. Vienna (Austria): R Foundation for Statistical Computing.
-
(2010)
R: A Language and Environment for Statistical Computing
-
-
-
15
-
-
0033523903
-
Mitochondrial DNA repairs double-strand breaks in yeast chromosomes
-
Ricchetti M, Fairhead C, Dujon B. 1999. Mitochondrial DNA repairs double-strand breaks in yeast chromosomes. Nature 402: 96-100.
-
(1999)
Nature
, vol.402
, pp. 96-100
-
-
Ricchetti, M.1
Fairhead, C.2
Dujon, B.3
-
16
-
-
77949263596
-
Stable internal reference genes for normalization of real-time RT-PCR in tobacco (Nicotiana tabacum) during development and abiotic stress
-
Schmidt GW, Delaney SK. 2010. Stable internal reference genes for normalization of real-time RT-PCR in tobacco (Nicotiana tabacum) during development and abiotic stress. Mol Genet Genomics. 283: 233-241.
-
(2010)
Mol Genet Genomics
, vol.283
, pp. 233-241
-
-
Schmidt, G.W.1
Delaney, S.K.2
-
17
-
-
0037246944
-
PlantProm: A database of plant promoter sequences
-
Shahmuradov IA, Gammerman AJ, Hancock JM, Bramley PM, Solovyev VV. 2003. PlantProm: a database of plant promoter sequences. Nucleic Acids Res. 31: 114-117.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 114-117
-
-
Shahmuradov, I.A.1
Gammerman, A.J.2
Hancock, J.M.3
Bramley, P.M.4
Solovyev, V.V.5
-
18
-
-
55549094836
-
Transfer of plastid DNA to the nucleus is elevated during male gametogenesis in tobacco
-
Sheppard AE, et al. 2008. Transfer of plastid DNA to the nucleus is elevated during male gametogenesis in tobacco. Plant Physiol. 148: 328-336.
-
(2008)
Plant Physiol
, vol.148
, pp. 328-336
-
-
Sheppard, A.E.1
-
19
-
-
84880967475
-
Measuring Arabidopsis chromatin accessibility using DNase I-polymerase chain reaction and DNase I-chip assays
-
Shu H, Gruissem W, Hennig L. 2013. Measuring Arabidopsis chromatin accessibility using DNase I-polymerase chain reaction and DNase I-chip assays. Plant Physiol. 162: 1794-1801.
-
(2013)
Plant Physiol
, vol.162
, pp. 1794-1801
-
-
Shu, H.1
Gruissem, W.2
Hennig, L.3
-
20
-
-
80053539409
-
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
-
Song L, et al. 2011. Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity. Genome Res. 21: 1757-1767.
-
(2011)
Genome Res
, vol.21
, pp. 1757-1767
-
-
Song, L.1
-
21
-
-
0032134218
-
Transcription from heterologous rRNA operon promoters in chloroplasts reveals requirement for specific activating factors
-
Sriraman P, Silhavy D, Maliga P. 1998. Transcription from heterologous rRNA operon promoters in chloroplasts reveals requirement for specific activating factors. Plant Physiol. 117: 1495-1499.
-
(1998)
Plant Physiol
, vol.117
, pp. 1495-1499
-
-
Sriraman, P.1
Silhavy, D.2
Maliga, P.3
-
22
-
-
33845302595
-
Experimental reconstruction of functional gene transfer from the tobacco plastid genome to the nucleus
-
Stegemann S, Bock R. 2006. Experimental reconstruction of functional gene transfer from the tobacco plastid genome to the nucleus. Plant Cell 18: 2869-2878.
-
(2006)
Plant Cell
, vol.18
, pp. 2869-2878
-
-
Stegemann, S.1
Bock, R.2
-
23
-
-
0042760348
-
High-frequency gene transfer from the chloroplast genome to the nucleus
-
Stegemann S, Hartmann S, Ruf S, Bock R. 2003. High-frequency gene transfer from the chloroplast genome to the nucleus. Proc Natl Acad Sci U S A. 100: 8828-8833.
-
(2003)
Proc Natl Acad Sci U S A.
, vol.100
, pp. 8828-8833
-
-
Stegemann, S.1
Hartmann, S.2
Ruf, S.3
Bock, R.4
-
24
-
-
0025325148
-
Escape of DNA from mitochondria to the nucleus in Saccharomyces cerevisiae
-
Thorsness PE, Fox TD. 1990. Escape of DNA from mitochondria to the nucleus in Saccharomyces cerevisiae. Nature 346: 376-379.
-
(1990)
Nature
, vol.346
, pp. 376-379
-
-
Thorsness, P.E.1
Fox, T.D.2
-
25
-
-
0742323538
-
Endosymbiotic gene transfer: Organelle genomes forge eukaryotic chromosomes
-
Timmis JN, Ayliffe MA, Huang CY, Martin W. 2004. Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes. Nat Rev Genet. 5: 123-135.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 123-135
-
-
Timmis, J.N.1
Ayliffe, M.A.2
Huang, C.Y.3
Martin, W.4
-
26
-
-
78449259560
-
Stress-induced activation of heterochromatic transcription
-
Tittel-Elmer M, et al. 2010. Stress-induced activation of heterochromatic transcription. PLoS Genet. 6:e1001175.
-
(2010)
PLoS Genet
, vol.6
-
-
Tittel-Elmer, M.1
-
28
-
-
84863131370
-
Environmental stress increases the entry of cytoplasmic organellar DNA into the nucleus in plants
-
Wang D, Lloyd AH, Timmis JN. 2012. Environmental stress increases the entry of cytoplasmic organellar DNA into the nucleus in plants. Proc Natl Acad Sci U S A. 109: 2444-2448.
-
(2012)
Proc Natl Acad Sci U S A.
, vol.109
, pp. 2444-2448
-
-
Wang, D.1
Lloyd, A.H.2
Timmis, J.N.3
-
29
-
-
84863586271
-
Plastid sequences contribute to some plant mitochondrial genes
-
Wang D, Rousseau-Gueutin M, Timmis JN. 2012. Plastid sequences contribute to some plant mitochondrial genes. Mol Biol Evol. 29: 1707-1711.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 1707-1711
-
-
Wang, D.1
Rousseau-Gueutin, M.2
Timmis, J.N.3
-
30
-
-
84891600269
-
Cytoplasmic organelle DNA preferentially inserts into open chromatin
-
Wang D, Timmis JN. 2013. Cytoplasmic organelle DNA preferentially inserts into open chromatin. Genome Biol Evol. 5: 1060-1064.
-
(2013)
Genome Biol Evol
, vol.5
, pp. 1060-1064
-
-
Wang, D.1
Timmis, J.N.2
-
32
-
-
77951820899
-
Fast and SNP-tolerant detection of complex variants and splicing in short reads
-
Wu TD, Nacu S. 2010. Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics 26: 873-881.
-
(2010)
Bioinformatics
, vol.26
, pp. 873-881
-
-
Wu, T.D.1
Nacu, S.2
-
33
-
-
15244356999
-
Estimating the copy number of transgenes in transformed rice by real-time quantitative PCR
-
Yang L, et al. 2005. Estimating the copy number of transgenes in transformed rice by real-time quantitative PCR. Plant Cell Rep. 23: 759-763.
-
(2005)
Plant Cell Rep
, vol.23
, pp. 759-763
-
-
Yang, L.1
-
34
-
-
84855309434
-
High-resolution mapping of open chromatin in the rice genome
-
Zhang W, et al. 2012. High-resolution mapping of open chromatin in the rice genome. Genome Res. 22: 151-162.
-
(2012)
Genome Res
, vol.22
, pp. 151-162
-
-
Zhang, W.1
|