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Volumn 20, Issue 7, 2014, Pages 989-993

RAID: A comprehensive resource for human RNA-associated (RNA-RNA/RNA-protein) interaction

Author keywords

Database; Interaction; RNA protein; RNA RNA

Indexed keywords

RNA;

EID: 84902682043     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.044776.114     Document Type: Article
Times cited : (54)

References (39)
  • 3
    • 64349094767 scopus 로고    scopus 로고
    • Tissue specificity and the human protein interaction network
    • Bossi A, Lehner B. 2009. Tissue specificity and the human protein interaction network. Mol Syst Biol 5: 260.
    • (2009) Mol Syst Biol , vol.5 , pp. 260
    • Bossi, A.1    Lehner, B.2
  • 7
    • 81355142141 scopus 로고    scopus 로고
    • Non-coding RNAs in human disease
    • Esteller M. 2011. Non-coding RNAs in human disease. Nat Rev Genet 12: 861-874.
    • (2011) Nat Rev Genet , vol.12 , pp. 861-874
    • Esteller, M.1
  • 9
    • 84865844316 scopus 로고    scopus 로고
    • Decoding the human genome
    • Frazer KA. 2012. Decoding the human genome. Genome Res 22: 1599-1601.
    • (2012) Genome Res , vol.22 , pp. 1599-1601
    • Frazer, K.A.1
  • 12
    • 77249162660 scopus 로고    scopus 로고
    • Inhibition of metastasis-associated lung adenocarcinoma transcript 1 in CaSki human cervical cancer cells suppresses cell proliferation and invasion
    • Guo F, Li Y, Liu Y, Wang J, Li G. 2010. Inhibition of metastasis-associated lung adenocarcinoma transcript 1 in CaSki human cervical cancer cells suppresses cell proliferation and invasion. Acta Biochim Biophys Sin 42: 224-229.
    • (2010) Acta Biochim Biophys Sin , vol.42 , pp. 224-229
    • Guo, F.1    Li, Y.2    Liu, Y.3    Wang, J.4    Li, G.5
  • 13
    • 84857066786 scopus 로고    scopus 로고
    • Modular regulatory principles of large noncoding RNAs
    • Guttman M, Rinn JL. 2012. Modular regulatory principles of large noncoding RNAs. Nature 482: 339-346.
    • (2012) Nature , vol.482 , pp. 339-346
    • Guttman, M.1    Rinn, J.L.2
  • 17
    • 84855916545 scopus 로고    scopus 로고
    • Protein-RNA interactions: New genomic technologies and perspectives
    • Konig J, Zarnack K, Luscombe NM, Ule J. 2011. Protein-RNA interactions: new genomic technologies and perspectives. Nat Rev Genet 13: 77-83.
    • (2011) Nat Rev Genet , vol.13 , pp. 77-83
    • Konig, J.1    Zarnack, K.2    Luscombe, N.M.3    Ule, J.4
  • 18
    • 40549105098 scopus 로고    scopus 로고
    • Prediction of RNA binding sites in a protein using SVM and PSSM profile
    • Kumar M, Gromiha MM, Raghava GP. 2008. Prediction of RNA binding sites in a protein using SVM and PSSM profile. Proteins 71: 189-194.
    • (2008) Proteins , vol.71 , pp. 189-194
    • Kumar, M.1    Gromiha, M.M.2    Raghava, G.P.3
  • 19
    • 69149090874 scopus 로고    scopus 로고
    • Role of human noncoding RNAs in the control of tumorigenesis
    • Li L, Feng T, Lian Y, Zhang G, Garen A, Song X. 2009. Role of human noncoding RNAs in the control of tumorigenesis. Proc Natl Acad Sci 106: 12956-12961.
    • (2009) Proc Natl Acad Sci , vol.106 , pp. 12956-12961
    • Li, L.1    Feng, T.2    Lian, Y.3    Zhang, G.4    Garen, A.5    Song, X.6
  • 20
    • 84877344929 scopus 로고    scopus 로고
    • Connect the dots: A systems level approach for analyzing the miRNA-mediated cell death network
    • Li Y, Zhuang L,Wang Y, Hu Y, Wu Y, Wang D, Xu J. 2013. Connect the dots: a systems level approach for analyzing the miRNA-mediated cell death network. Autophagy 9: 436-439.
    • (2013) Autophagy , vol.9 , pp. 436-439
    • Li, Y.1    Zhuang, L.2    Wang, Y.3    Hu, Y.4    Wu, Y.5    Wang, D.6    Xu, J.7
  • 21
    • 84891818924 scopus 로고    scopus 로고
    • starBase v2.0: Decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks fromlarge-scale CLIP-Seq data
    • Li JH, Liu S, Zhou H, Qu LH, Yang JH. 2014. starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks fromlarge-scale CLIP-Seq data. Nucleic Acids Res 42: D92-D97.
    • (2014) Nucleic Acids Res , vol.42
    • Li, J.H.1    Liu, S.2    Zhou, H.3    Qu, L.H.4    Yang, J.H.5
  • 23
    • 84875229872 scopus 로고    scopus 로고
    • How cells get the message: Dynamic assembly and function of mRNA-protein complexes
    • Muller-McNicoll M, Neugebauer KM. 2013. How cells get the message: dynamic assembly and function of mRNA-protein complexes. Nat Rev Genet 14: 275-287.
    • (2013) Nat Rev Genet , vol.14 , pp. 275-287
    • Muller-McNicoll, M.1    Neugebauer, K.M.2
  • 26
    • 79961170994 scopus 로고    scopus 로고
    • A ceRNA hypothesis: The Rosetta Stone of a hidden RNA language?
    • Salmena L, Poliseno L, Tay Y, Kats L, Pandolfi PP. 2011. A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language? Cell 146: 353-358.
    • (2011) Cell , vol.146 , pp. 353-358
    • Salmena, L.1    Poliseno, L.2    Tay, Y.3    Kats, L.4    Pandolfi, P.P.5
  • 27
    • 58149196200 scopus 로고    scopus 로고
    • RsiteDB: A database of protein binding pockets that interact with RNA nucleotide bases
    • Shulman-Peleg A, Nussinov R, Wolfson HJ. 2009. RsiteDB: a database of protein binding pockets that interact with RNA nucleotide bases. Nucleic Acids Res 37: D369-D373.
    • (2009) Nucleic Acids Res , vol.37
    • Shulman-Peleg, A.1    Nussinov, R.2    Wolfson, H.J.3
  • 31
    • 79952674000 scopus 로고    scopus 로고
    • Interactome networks and human disease
    • Vidal M, Cusick ME, Barabasi AL. 2011. Interactome networks and human disease. Cell 144: 986-998.
    • (2011) Cell , vol.144 , pp. 986-998
    • Vidal, M.1    Cusick, M.E.2    Barabasi, A.L.3
  • 32
    • 33747828217 scopus 로고    scopus 로고
    • BindN: A web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences
    • Wang L, Brown SJ. 2006. BindN: a web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences. Nucleic Acids Res 34: W243-W248.
    • (2006) Nucleic Acids Res , vol.34
    • Wang, L.1    Brown, S.J.2
  • 33
    • 77953886400 scopus 로고    scopus 로고
    • BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features
    • Wang L, Huang C, Yang MQ, Yang JY. 2010. BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features. BMC Syst Biol 4 Suppl 1: S3.
    • (2010) BMC Syst Biol , vol.4 , Issue.SUPPL. 1
    • Wang, L.1    Huang, C.2    Yang, M.Q.3    Yang, J.Y.4
  • 35
    • 84867300120 scopus 로고    scopus 로고
    • RIsearch: Fast RNA-RNA interaction search using a simplified nearest-neighbor energy model
    • Wenzel A, Akbasli E, Gorodkin J. 2012. RIsearch: fast RNA-RNA interaction search using a simplified nearest-neighbor energy model. Bioinformatics 28: 2738-2746.
    • (2012) Bioinformatics , vol.28 , pp. 2738-2746
    • Wenzel, A.1    Akbasli, E.2    Gorodkin, J.3
  • 37
    • 84865157665 scopus 로고    scopus 로고
    • miRDeathDB: A database bridging microRNAs and the programmed cell death
    • Xu J, Li YH. 2012. miRDeathDB: a database bridging microRNAs and the programmed cell death. Cell Death Differ 19: 1571.
    • (2012) Cell Death Differ , vol.19 , pp. 1571
    • Xu, J.1    Li, Y.H.2
  • 38
    • 84864872512 scopus 로고    scopus 로고
    • MicroRNAs in autophagy and their emerging roles in crosstalk with apoptosis
    • Xu J, Wang Y, Tan X, Jing H. 2012. MicroRNAs in autophagy and their emerging roles in crosstalk with apoptosis. Autophagy 8: 873-882.
    • (2012) Autophagy , vol.8 , pp. 873-882
    • Xu, J.1    Wang, Y.2    Tan, X.3    Jing, H.4
  • 39
    • 78651307694 scopus 로고    scopus 로고
    • starBase: A database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data
    • Yang JH, Li JH, Shao P, Zhou H, Chen YQ, Qu LH. 2011. starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data. Nucleic Acids Res 39: D202-D209.
    • (2011) Nucleic Acids Res , vol.39
    • Yang, J.H.1    Li, J.H.2    Shao, P.3    Zhou, H.4    Chen, Y.Q.5    Qu, L.H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.