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Volumn 37, Issue SUPPL. 1, 2009, Pages

RsiteDB: A database of protein binding pockets that interact with RNA nucleotide bases

Author keywords

[No Author keywords available]

Indexed keywords

SINGLE STRANDED RNA;

EID: 58149196200     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn759     Document Type: Article
Times cited : (26)

References (22)
  • 1
    • 18444383371 scopus 로고    scopus 로고
    • Protein families and RNA recognition
    • Chen,Y. and Varani,G. (2005) Protein families and RNA recognition. FEBS J., 272, 2088-2097.
    • (2005) FEBS J , vol.272 , pp. 2088-2097
    • Chen, Y.1    Varani, G.2
  • 2
    • 34249316905 scopus 로고    scopus 로고
    • RNA-binding proteins: Modular design for efficient function
    • Lunde,B.M., Moore,C. and Varani,G. (2007) RNA-binding proteins: Modular design for efficient function. Nat. Rev. Mol. Cell Biol., 8, 479-490.
    • (2007) Nat. Rev. Mol. Cell Biol , vol.8 , pp. 479-490
    • Lunde, B.M.1    Moore, C.2    Varani, G.3
  • 3
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin,A., Brenner,S., Hubbard,T. and Chothia,C. (1995) SCOP: A structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247, 536-540.
    • (1995) J. Mol. Biol , vol.247 , pp. 536-540
    • Murzin, A.1    Brenner, S.2    Hubbard, T.3    Chothia, C.4
  • 6
    • 0345864010 scopus 로고    scopus 로고
    • Tamura,M, Hendrix,D.K, Klosterman,P.S, Schimmelman,N.R, Brenner,S.E. and Holbrook,S.R, 2004 SCOR: Structural Classification of RNA, Version 2.0. Nucleic Acids Res, 32, D182-D184
    • Tamura,M., Hendrix,D.K., Klosterman,P.S., Schimmelman,N.R., Brenner,S.E. and Holbrook,S.R. (2004) SCOR: Structural Classification of RNA, Version 2.0. Nucleic Acids Res., 32, D182-D184.
  • 7
    • 18544377013 scopus 로고    scopus 로고
    • The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression
    • Maris,C., Dominguez,C. and Allain,F.H.-T. (2005) The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression. FEBS J., 272, 2118-2131.
    • (2005) FEBS J , vol.272 , pp. 2118-2131
    • Maris, C.1    Dominguez, C.2    Allain, F.H.-T.3
  • 8
    • 0033951279 scopus 로고    scopus 로고
    • Single-stranded-RNA binding proteins
    • Antson,A.A. (2000) Single-stranded-RNA binding proteins. Curr. Opin. Struct. Biol., 10, 87-94.
    • (2000) Curr. Opin. Struct. Biol , vol.10 , pp. 87-94
    • Antson, A.A.1
  • 9
    • 18244362861 scopus 로고    scopus 로고
    • A neural network method for identification of RNA-interacting residues in protein
    • Jeong,E., Chung,I.F. and Miyano,S. (2004) A neural network method for identification of RNA-interacting residues in protein. Genome Inform. 15, 105-116.
    • (2004) Genome Inform , vol.15 , pp. 105-116
    • Jeong, E.1    Chung, I.F.2    Miyano, S.3
  • 11
    • 33845865515 scopus 로고    scopus 로고
    • Amino acid residue doublet propensity in the protein-RNA interface and its application to RNA interface prediction
    • Kim,O.T.P., Yura,K. and Go,N. (2006) Amino acid residue doublet propensity in the protein-RNA interface and its application to RNA interface prediction. Nucleic Acids Res., 34, 6450-6460.
    • (2006) Nucleic Acids Res , vol.34 , pp. 6450-6460
    • Kim, O.T.P.1    Yura, K.2    Go, N.3
  • 12
    • 33747828217 scopus 로고    scopus 로고
    • BindN: A web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences
    • Wang,L. and Brown,S.J. (2006) BindN: A web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences. Nucleic Acids Res., 34, W243-W248.
    • (2006) Nucleic Acids Res , vol.34
    • Wang, L.1    Brown, S.J.2
  • 13
    • 41149087805 scopus 로고    scopus 로고
    • Predicting RNA-binding sites from the protein structure based on electrostatics, evolution and geometry
    • Chen,Y.C. and Lim,C. (2008) Predicting RNA-binding sites from the protein structure based on electrostatics, evolution and geometry. Nucleic Acids Res., 36, e29.
    • (2008) Nucleic Acids Res , vol.36
    • Chen, Y.C.1    Lim, C.2
  • 14
    • 0032727991 scopus 로고    scopus 로고
    • Themes in RNA-protein recognition
    • Draper, D.E. (1999) Themes in RNA-protein recognition. J. Mol. Biol. 293, 255-270.
    • (1999) J. Mol. Biol , vol.293 , pp. 255-270
    • Draper, D.E.1
  • 15
    • 2342487400 scopus 로고    scopus 로고
    • Three-dimensional motifs from the SCOR, structural classification of RNA database: Extruded strands, base triples, tetraloops and U-turns
    • Klosterman,P.S., Hendrix,D.K., Tamura,M., Holbrook,S.R. and Brenner,S.E. (2004) Three-dimensional motifs from the SCOR, structural classification of RNA database: Extruded strands, base triples, tetraloops and U-turns. Nucleic Acids Res., 32, 2342-2352.
    • (2004) Nucleic Acids Res , vol.32 , pp. 2342-2352
    • Klosterman, P.S.1    Hendrix, D.K.2    Tamura, M.3    Holbrook, S.R.4    Brenner, S.E.5
  • 16
    • 39749121395 scopus 로고    scopus 로고
    • Evaluating conformational changes in protein structures binding RNA
    • Ellis,J.J. and Jones,S. (2007) Evaluating conformational changes in protein structures binding RNA. Proteins, 4, 1518-1526.
    • (2007) Proteins , vol.4 , pp. 1518-1526
    • Ellis, J.J.1    Jones, S.2
  • 17
    • 43049091848 scopus 로고    scopus 로고
    • Prediction of interacting single-stranded RNA bases by protein binding patterns
    • Shulman-Peleg,A., Shatsky,M., Nussinov,R. and Wolfson,H. (2008) Prediction of interacting single-stranded RNA bases by protein binding patterns. J. Mol. Biol., 379, 299-316.
    • (2008) J. Mol. Biol , vol.379 , pp. 299-316
    • Shulman-Peleg, A.1    Shatsky, M.2    Nussinov, R.3    Wolfson, H.4
  • 19
    • 0000538815 scopus 로고
    • Analytical molecular surface calculation
    • Connolly,M. (1983) Analytical molecular surface calculation. J. Appl. Cryst., 16, 548-558.
    • (1983) J. Appl. Cryst , vol.16 , pp. 548-558
    • Connolly, M.1
  • 20
    • 0036406643 scopus 로고    scopus 로고
    • A new method to detect related function among proteins independent of sequence or fold homology
    • Schmitt,S., Kuhn,D. and Klebe,G. (2002) A new method to detect related function among proteins independent of sequence or fold homology. J. Mol. Biol., 323, 387-406.
    • (2002) J. Mol. Biol , vol.323 , pp. 387-406
    • Schmitt, S.1    Kuhn, D.2    Klebe, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.